From owner-acedb@net.bio.net Wed Sep 01 00:46:00 1999 Path: biosci!USA.COM!merchantnow From: merchantnow@USA.COM Newsgroups: bionet.software.acedb Subject: (none) Date: 31 Aug 1999 18:46:39 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 106 Sender: daemon@net.bio.net Distribution: world Message-ID: <989.283923.426261.merchantnow@usa.com> NNTP-Posting-Host: net.bio.net *This is a one time mailing. You will not be contacted again. If you still feel the need to be removed, please respond with the subject "remove" or call 1-909-222-3710* NOW YOU CAN SELL YOUR PRODUCT OR SERVICE TO EVERYONE! GET YOUR OWN MERCHANT ACCOUNT WITH NO HASSLES! SERIOUS INQUIRIES ONLY BY FAX OR MAIL. PLEASE FAX YOUR APPLICATION FOR FASTEST RESPONSE! Most merchant accounts approved within 5 business days regardless of past credit history! If you need to establish a merchant presence in the US, we can help! 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From owner-acedb@net.bio.net Wed Sep 01 06:11:00 1999 Path: biosci!newshost.lanl.gov!awabi.library.ucla.edu!128.230.129.106!news.maxwell.syr.edu!tank.news.pipex.net!pipex!server1.netnews.ja.net!hgmp.mrc.ac.uk!biosci From: ogataro@tm.nagasaki-u.ac.jp ("ogataro@tm.nagasaki-u.ac.jp") Newsgroups: bionet.software.acedb Subject: Error when read .ace files Date: 1 Sep 1999 08:04:51 +0100 Organization: Institiute of Tropical Medicine Lines: 58 Message-ID: <37CCD0C3.ADA2FCD6@tm.nagasaki-u.ac.jp> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=iso-2022-jp Content-Transfer-Encoding: 7bit X-Trace: niobium.hgmp.mrc.ac.uk 936169491 24201 193.62.192.80 (1 Sep 1999 07:04:51 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk NNTP-Posting-Date: 1 Sep 1999 07:04:51 GMT X-Received: from amazon.tm.nagasaki-u.ac.jp (amazon.tm.nagasaki-u.ac.jp [133.45.224.212]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id IAA23258 for ; Wed, 1 Sep 1999 08:04:40 +0100 (BST) X-Received: from tm.nagasaki-u.ac.jp ([133.45.224.93]) by amazon.tm.nagasaki-u.ac.jp (Netscape Messaging Server 3.6) with ESMTP id AAA2C9E for ; Wed, 1 Sep 1999 16:02:25 +0900 X-Mailer: Mozilla 4.08 [Vine-ja] (X11; I; Linux 2.0.36 i686) X-To: acedb@hgmp.mrc.ac.uk Dear Sirs I have a question. I couldn't read the Schistosoma data files into ACEDB. Here is the my situation. : I start to use "ACEDB", finish to download, install & reinitial the database. Next, I try to read the Schistosoma data files,dump1,2,3. ace, into ACEDB. But I couldn't make it. What I did for Schistosoma data is download the dump1,2,3.ace, options.wrm, models.wrm, subclasses.wrm, displays.wrm. Of course, I over wrote four files of .wrm on the originals . I attach the ERROR MESSAGE what I got through reading the ace files into database below. dump1.ace ---------------------------------------------------------------------- FATAL ERROR reported by program xace, in file lexsubs4.c, at line 1929: Attempt to create a key with emtpy name in classAuthor // Sorry for the crash, please report it, if it is reproducible ---------------------------------------------------------------------- dump2.ace ---------------------------- ERROR: parse error near line 159074 in No obj : No object name ---------------------------- dump3.ace ---------------------------- ERROR: parse error near line 209 in jap0009 : Unknown tag "japonicum" ---------------------------- The version of ACEDB what I use is 4.7l (bin.linux_libc6.4_7l.tar.Z) from Sanger and four .ace files of Schistoma data are from www.ebi.ac.uk. I don't know how I should do, so I'd like to have some advice. Thank you for your kindness. -- ---------------------------------- Ken Ogata ogataro@tm.nagasaki-u.ac.jp Institute of Tropical Medicine Information and Reference Center ---------------------------------- --- From owner-acedb@net.bio.net Wed Sep 01 07:32:00 1999 Path: biosci!news.stanford.edu!newsfeed.stanford.edu!remarQ73!supernews.com!remarQ.com!howland.erols.net!news-out-b.news.pipex.net.MISMATCH!tank.news.pipex.net!pipex!server1.netnews.ja.net!hgmp.mrc.ac.uk!biosci From: ogataro@tm.nagasaki-u.ac.jp (Ken Ogata) Newsgroups: bionet.software.acedb Subject: Error when read .ace file Date: 1 Sep 1999 09:25:56 +0100 Organization: Institiute of Tropical Medicine, Nagasaki University Lines: 58 Message-ID: <37CCE3C4.4E42655B@tm.nagasaki-u.ac.jp> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=iso-2022-jp Content-Transfer-Encoding: 7bit X-Trace: niobium.hgmp.mrc.ac.uk 936174356 25233 193.62.192.80 (1 Sep 1999 08:25:56 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk NNTP-Posting-Date: 1 Sep 1999 08:25:56 GMT X-Received: from amazon.tm.nagasaki-u.ac.jp (amazon.tm.nagasaki-u.ac.jp [133.45.224.212]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id JAA27155 for ; Wed, 1 Sep 1999 09:25:44 +0100 (BST) X-Received: from tm.nagasaki-u.ac.jp ([133.45.224.93]) by amazon.tm.nagasaki-u.ac.jp (Netscape Messaging Server 3.6) with ESMTP id AAA2D7A for ; Wed, 1 Sep 1999 17:23:30 +0900 X-Mailer: Mozilla 4.08 [Vine-ja] (X11; I; Linux 2.0.36 i686) X-To: acedb@hgmp.mrc.ac.uk Dear Sirs I have a question. I couldn't read the Schistosoma data files into ACEDB. Here is the my situation. : I start to use "ACEDB", finish to download, install & reinitial the database. Next, I try to read the Schistosoma data files,dump1,2,3. ace, into ACEDB. But I couldn't make it. What I did for Schistosoma data is download the dump1,2,3.ace, options.wrm, models.wrm, subclasses.wrm, displays.wrm. Of course, I over wrote four files of .wrm on the originals . I attach the ERROR MESSAGE what I got through reading the ace files into database below. dump1.ace ---------------------------------------------------------------------- FATAL ERROR reported by program xace, in file lexsubs4.c, at line 1929: Attempt to create a key with emtpy name in classAuthor // Sorry for the crash, please report it, if it is reproducible ---------------------------------------------------------------------- dump2.ace ---------------------------- ERROR: parse error near line 159074 in No obj : No object name ---------------------------- dump3.ace ---------------------------- ERROR: parse error near line 209 in jap0009 : Unknown tag "japonicum" ---------------------------- The version of ACEDB what I use is 4.7l (bin.linux_libc6.4_7l.tar.Z) from Sanger and four .ace files of Schistoma data are from www.ebi.ac.uk. I don't know how I should do, so I'd like to have some advice. Thank you for your kindness. -- ---------------------------------- Ken Ogata ogataro@tm.nagasaki-u.ac.jp Information and Reference Center Institute of Tropical Medicine ---------------------------------- --- From owner-acedb@net.bio.net Wed Sep 01 08:00:00 1999 Path: biosci!internet!biosci!not-for-mail From: biohelp (BIOSCI Administrator) Newsgroups: bionet.software.acedb Subject: BIOSCI/bionet miniFAQ & Fundraiser Date: 1 Sep 1999 02:00:09 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 239 Sender: daemon@net.bio.net Distribution: world Message-ID: <199909010900.CAA23693@net.bio.net> NNTP-Posting-Host: net.bio.net (LAST REVISION: 14-AUG-99) This BIOSCI "miniFAQ" is designed to answer the questions that come up the *most frequently*. The main BIOSCI FAQ (Frequently Asked Questions) is accessible on the World Wide Web at URL http://www.bio.net/. If you can not find an answer to your question in this or other documentation, the BIOSCI technical support staff answers e-mail queries sent to biosci-help@net.bio.net We can only answer questions about the use of the newsgroups and mailing lists. We unfortunately do not have the staff to do Internet information searches or answer scientific questions. Please post those to the appropriate BIOSCI/bionet newsgroups. Contents: -------- 0) BIOSCI NEEDS YOUR SUPPORT!! 1) Using the WWW to access the BIOSCI/bionet newsgroups. 2) What to do about "spams," i.e., junk mail, ads, etc. 3) Examples of subscribing and unsubscribing to the mailing lists. 4) The BIOSCI user address and research interest directory. 0) BIOSCI NEEDS YOUR SUPPORT!! ------------------------------ BIOSCI's government funding has been expended, and we are now operating solely from advertising revenue that we have raised from our Web site at http://www.bio.net/. We need just a few minutes of your time to help us serve you. You can do two important things which will take very little time for you individually and will immensely help us continue to help you. First, please use our WWW system at http://www.bio.net/ to access the archives. You can post or reply to messages via your Web browser as described in item #1 below. Your usage helps attract sponsors. If you contact any of our sponsors, please be sure to thank them for supporting BIOSCI. It is critical for them to get this feedback if they are to continue their sponsorship for the long term. Second, if you work for a company or organization that provides products or services of interest to the biology community, please pass this message on to your marketing or marketing communications department or other appropriate group. Please ask them to help support BIOSCI by sponsoring our Web site and explain the uses and benefits of the system to the biology community. If they are interested, they can then contact us for further information at our tech support address, biosci-help@net.bio.net. 1) Using the WWW to access the BIOSCI/bionet newsgroups. -------------------------------------------------------- All BIOSCI/bionet full newsgroups are accessible through the World Wide Web (WWW) at URL http://www.bio.net. One can read and reply publicly or privately to both recent postings and archived messages through one's Web browser if it is configured properly to send e-mail. Each newsgroup is equipped with its own WAIS index. The main BIOSCI home page also has access to the BIO-JOURNALS Table of Contents database WAIS index and the BIOSCI user address database described in another item further below. 2) What to do about "spams," i.e., junk mail, ads, etc. ------------------------------------------------------- BIOSCI is a set of parallel USENET newsgroups (the "bionet" groups), mailing lists, and a hypermail archive at URL http://www.bio.net/. The same postings are distributed on all media (except for a small number of mailing-list-only groups at net.bio.net). Unfortunately it is becoming a despicable practice on the Internet (by a few people out to make a fast buck) to do automated mass postings to thousands of newsgroups and mailing lists. These attempts to grab free advertising are refered to as "spams" in the usual, somewhat boneheaded, net terminology. USENET is more susceptible to this practice, and many spams originate on the USENET groups and then are passed on to the mailing lists. However, spammers also get lists of mailing addresses and hit these too, so neither medium is immune. What should you do personally if you get junk mail? --------------------------------------------------- Just delete it and move on without reading it further. Filing a protest is becoming increasingly useless because spammers are often disguising the addresses where the messages are sent from. Unless you really understand Internet mail systems, your attempt at protest by sending replies to the message will often end up being sent to the address of an innocent person that the spammer is victimizing. What can BIOSCI/bionet do to protect its newsgroups? ---------------------------------------------------- The only solution currently available is to moderate the newsgroup. If this newsgroup is already moderated, then you are in good shape. Moderation protects the USENET distribution from about 95% of the spams that are being sent to date and protects the mailing lists completely. Moderation means, however, that someone has to take the time to review each message before it goes out. We have set up software here that simply allows the moderator to forward to an address at net.bio.net messages that (s)he wishes to have distributed. This takes no more time than that needed to read the message and pass it on, say about 1 min. per message. Most newsgroups currently have a discussion leader who is responsible for their newsgroup. The discussions leaders and their e-mail addresses are listed in the BIOSCI Information Sheet which is available on the Web at http://www.bio.net/. If a newsgroup is being hit with too many junk postings, please contact the discussion leader for that group and see if there is interest in moderating the group. Please do not assume that by simply posting a complaint to the newsgroup itself, anyone on the BIOSCI staff will act on your complaint. With close to 100 newsgroups to run, the BIOSCI staff has to rely on the discussion leaders of each newsgroup to report problems directly to us at biosci-help@net.bio.net. We will moderate any of our newsgroups if the discussion leader tells us that the readership of the group wishes to do so and if a moderator is willing to do the work. For most BIOSCI/bionet groups, this entails only a few minutes of work each day. Moderating a newsgroup will resolve probably 95% of the junk postings on the USENET distribution. Unfortunately there are easy ways for determined spammers to override the moderation mechanism on USENET, but we can protect our e-mail subscribers from unwanted postings if the newsgroup is moderated. You can also access our newsgroups over the WWW at URL http://www.bio.net. While this Web interface will not stop spammers from trying to post to the groups, this will give you yet another way, besides using USENET news, to keep the junk out of your personal mail files. For those of you with local USENET news systems, the Web interface will also give you faster access to new newsgroups and recent postings. 3) Examples of subscribing and unsubscribing to the mailing lists. ------------------------------------------------------------------ PLEASE NOTE: The BIOSCI management does NOT act on subscription/unsubscription requests that are posted improperly to the newsgroups and mailing lists. People who do this only bother everyone on the lists to no avail. Please be sure to follow the proper procedures below. Gory details are in the BIOSCI Information sheets on the Web at http://www.bio.net. Below we give an example utilizing the METHODS-AND-REAGENTS list at both of our two BIOSCI sites: Users in the Americas and Pacific Rim countries who use the BIOSCI ------------------------------------------------------------------ node at computer net.bio.net: ---------------------------- A) Determine the "listname" which is the <=8 character mail address ^^^^^^^^^^^^^ for the group. These can be found in the BIOSCI Info. Sheet. For the METHODS-AND-REAGENTS group the mailing address is methods@net.bio.net. The listname is the portion of the address to the left of the @ sign, i.e., "methods". The listname is used with the "subscribe" and "unsubscribe" commands illustrated below. B) Mail all commands in the body of a mail message addressed to biosci-server@net.bio.net. Do NOT send commands to the newsgroup posting addresses! Leave the Subject: line blank, any text on it will be ignored. C) In the body of your message put one or more of the following commands with an "end" command on the last line, e.g., subscribe methods unsubscribe methods end Do NOT put your e-mail address or other text on these lines. The server only allows you to cancel your subscription if the address on your mail header matches the address on our mailing list. Please ask for help at biosci-help@net.bio.net if your address has changed, e.g., if you know you are on the list but the server tells you that you are not a member. Users in Europe, Africa, and Central Asia who use the BIOSCI node at -------------------------------------------------------------------- the UK-HGMP-Resource Centre (known as hgmp.mrc.ac.uk): ----------------------------------------------------- A) Determine the "listname" which is the <=8 character mail address ^^^^^^^^^^^^^ for the group. These can be found in the BIOSCI Info. Sheet. For the METHODS-AND-REAGENTS group the mailing address is methods@hgmp.mrc.ac.uk. The listname is the portion of the address to the left of the @ sign, i.e., "methods". The listname is used with the "subscribe" and "unsubscribe" commands illustrated below. B) Mail all commands in the body of a mail message addressed to majordomo@hgmp.mrc.ac.uk. Do NOT send commands to the newsgroup posting addresses! Leave the Subject: line blank, any text on it will be ignored. C) In the body of your message put one or more of the following commands with an "end" command on the last line, e.g., subscribe methods unsubscribe methods end Please ask for help at biosci@hgmp.mrc.ac.uk if your address has changed, e.g., if you know you are on the list but the server tells you that you are not a member. 4) The BIOSCI user address and research interest directory. ----------------------------------------------------------- Please take this opportunity to add your name, address, and research interest information to the BIOSCI User Address Database if you have not already done so. You can fill out the address form directly through our Web page at URL http://www.bio.net/adrform.html. The address database is reindexed nightly for WWW access (the URL is http://www.bio.net/). If you are not directly on the Internet but can reach it by e-mail, please use our waismail server to access the user directory. waismail use is described above. You can also request a user address form by e-mail from biosci-help@net.bio.net. Please check your database entry from time-to-time to see if your address information is still up-to-date. Because of our limited personnel resources, we ask that you resubmit a *complete* form to revise your entry; we only replace complete entries and do not have resources to edit old forms. From owner-acedb@net.bio.net Sun Sep 05 09:35:00 1999 Path: biosci!MAILCITY.COM!macbob From: macbob@MAILCITY.COM (T & B Associates) Newsgroups: bionet.software.acedb Subject: 9,000,000 "*BYTEBLE" email addresses PLUS! Date: 5 Sep 1999 03:35:18 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 50 Sender: daemon@net.bio.net Distribution: world Message-ID: <419.436408.14493264macbob@mailcity.com> NNTP-Posting-Host: net.bio.net LIMITED TIME OFFER!! 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DISCLAIMER: The seller of this powerful software resource will not be held responsible for how the purchaser chooses to use its resources. ----------------------------------------------------------------------------------------------------------------- To UNSUBSCRIBE and be removed from this mailing, please leave us your complete email address on our toll-free voicemail server: 1-800-595-2001 HP400 From owner-acedb@net.bio.net Tue Sep 07 04:34:00 1999 Path: biosci!SEATTLEOFFICE.COM!newage1 From: newage1@SEATTLEOFFICE.COM ("MS NISHA MATHUR") Newsgroups: bionet.software.acedb Subject: BECOME ZERO TO HERO ON INTERNET THRU OUR TRAINING Date: 6 Sep 1999 22:34:43 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 12 Sender: daemon@net.bio.net Distribution: world Message-ID: <199909071458.KAA30335@nde.vsnl.net.in> Reply-To: newage1@seattleoffice.com NNTP-Posting-Host: net.bio.net INTERNET TRAINING AVAILABLE IN DELHI RS.700/- GET BEST WEBSITES IN THE WORLD-- IN JUST 3 HOURS BECOME ZERO TO HERO ON INTERNET MS NISHA MATHUR From owner-acedb@net.bio.net Tue Sep 07 05:42:00 1999 Path: biosci!news.stanford.edu!newsfeed.stanford.edu!newsfeed.berkeley.edu!dispose.news.demon.net!demon!europa.netcrusader.net!204.59.152.222!news-peer.gip.net!news.gsl.net!gip.net!spring.edu.tw!netnews.hinet.net!news From: Brandon Leung Newsgroups: bionet.software,alt.radio.networks.cbc,bionet.software.acedb,at.network.eunet,alt.tv.twin-peaks Subject: hello again Date: Tue, 07 Sep 1999 14:36:48 +0800 Organization: DCI HiNet Message-ID: <37D4B27F.68510250@hongkong.com> Reply-To: oopsbrandon@hongkong.com NNTP-Posting-Host: h73.s4.ts30.hinet.net Mime-Version: 1.0 Content-Type: text/plain; charset=big5; x-mac-type="54455854"; x-mac-creator="4D4F5353" Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 4.51 (Macintosh; I; PPC) X-Accept-Language: en Lines: 2 Xref: biosci bionet.software:24114 bionet.software.acedb:2596 q From owner-acedb@net.bio.net Tue Sep 07 21:19:00 1999 Path: biosci!rutgers!gatech!csulb.edu!news.sgi.com!news.maxwell.syr.edu!newsfeed.corridex.com!nntp2.savvis.net!nntp1.savvis.net!news1.tor.metronet.ca!maggie.ionsys.com!ultimateresponse.com From: TrueDate@ultimateresponse.com Newsgroups: bionet.software.acedb Subject: Are you my heart's desire? 15761 Date: Tuesday, 07 Sep 1999 17:46:15 -0600 Organization: Selected Fotomodels Lines: 70 Message-ID: <07099917.4615@ultimateresponse.com> Reply-To: TrueDate@ultimateresponse.com NNTP-Posting-Host: itchy4-31-181.ionsys.com Fetish: High Class Ftotomodels . 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Includes instant ONLINE UPDATES for 24 months. 9']m From owner-acedb@net.bio.net Tue Sep 07 22:39:00 1999 Path: biosci!bloom-beacon.mit.edu!panix!howland.erols.net!vixen.cso.uiuc.edu!newsfeed.acns.nwu.edu!news.cc.uic.edu!not-for-mail From: Mohyeddin Kassar Newsgroups: bionet.software.acedb Subject: Jobs: Statistics/Bio Date: Tue, 07 Sep 1999 17:45:36 -0500 Organization: Energy Resources Center Lines: 35 Message-ID: <37D5958F.4A50C327@uic.edu> NNTP-Posting-Host: mcgrath.erc.uic.edu Mime-Version: 1.0 Content-Type: multipart/mixed; boundary="------------889223AFB025AE69BBACE9BA" X-Mailer: Mozilla 4.5 [en] (Win95; I) X-Accept-Language: en This is a multi-part message in MIME format. --------------889223AFB025AE69BBACE9BA Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit Several positions for PH.D. Statistics or Biostatistics available, If Interested send resume to: jobs@penet-careers.com http://www.penet-careers.com/ --------------889223AFB025AE69BBACE9BA Content-Type: text/x-vcard; charset=us-ascii; name="mkassar.vcf" Content-Transfer-Encoding: 7bit Content-Description: Card for Mohyeddin Kassar Content-Disposition: attachment; filename="mkassar.vcf" begin:vcard n:Kassar;Mohyeddin tel;fax:312-996-5620 tel;home:312-829-1485 tel;work:312-413-3615 x-mozilla-html:FALSE org:University Of Illinois at Chicago;Energy Resources Center version:2.1 email;internet:mkassar@uic.edu title:Research Economist adr;quoted-printable:;;(MC156)=0D=0A851 S. Morgan Street, 12th Floor SEO;Chicago;IL;60607-7054;USA fn:Mohyeddin Kassar end:vcard --------------889223AFB025AE69BBACE9BA-- From owner-acedb@net.bio.net Tue Sep 07 22:45:00 1999 Path: biosci!SUBDIMENSION.COM!successfulu From: successfulu@SUBDIMENSION.COM (Become Truly Cash Rich!) Newsgroups: bionet.software.acedb Subject: Earn $2,000 - $10,000/ MONTH Date: 7 Sep 1999 16:44:35 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 22 Sender: daemon@net.bio.net Distribution: world Message-ID: <419.436410.81916412successfulu@subdimension.com> NNTP-Posting-Host: net.bio.net NO MONEY NECESSARY TO START YOUR OWN BUSINESS IF you could use $2,000 to $3,000 per month IF you have 10 to 20 hours per week IF you have a computer or IF you could use $10,000 per month IF you have 30 hours per week IF you have a computer THEN you can become truly cash rich. For details, simply write to success4u@mailman.zzn.com with YES in the subject line. ________________________________________________ To be removed from this list, simply write to success4u@mailman.zzn.com with REMOVE in the subject. From owner-acedb@net.bio.net Wed Sep 08 13:07:00 1999 Path: biosci!newsfeed.stanford.edu!newsfeed.berkeley.edu!usenet.INS.CWRU.Edu!news.ccf.org!news From: Richard Gronostajski Newsgroups: bionet.software.acedb Subject: xacembly won't compile on linuxppc Date: Wed, 08 Sep 1999 09:56:20 -0500 Organization: Lerner Research Institute Lines: 51 Message-ID: <37D67912.394E864A@ccf.org> Reply-To: gronosr@ccf.org NNTP-Posting-Host: lri227-89.lerner.ccf.org Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii; x-mac-type="54455854"; x-mac-creator="4D4F5353" Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 4.6 (Macintosh; U; PPC) X-Accept-Language: en Hi, I managed to compile xace for my Mac G3/233 running linuxppc-1999, since the linux binaries wouldn't execute after downloading and installing. However, I couldn't get xacembly to compile, instead it gave me the error message shown below about defcpt.c. Any suggestions on how to fix defcpt.c so that it will compile. I'm compiling version 4_7l. I've tried a few of the linux compile options and so far LINUX_4_OPT has worked the best. Also, is it sufficient to copy all the docs from wdoc to a directory called whelp to get all the help that is available? Thanks for any suggestions. [gronos@gronos ~/newacedb]$ make making libfree.a for LINUX_4_OPT making libgraph.a for LINUX_4_OPT making libgif.a for LINUX_4_OPT making libacecl.a for LINUX_4_OPT making libace.a for LINUX_4_OPT making libstaden.a for LINUX_4_OPT making xace for LINUX_4_OPT ./libfree.a(filsubs.o): In function `filGetFullPath': filsubs.o(.text+0x414): the `getwd' function is dangerous and should not be used. making tace for LINUX_4_OPT making giface for LINUX_4_OPT making aceserver for LINUX_4_OPT making gifaceserver for LINUX_4_OPT making aceclient for LINUX_4_OPT making xaceclient for LINUX_4_OPT making acediff for LINUX_4_OPT making makeSCF for LINUX_4_OPT making xacembly for LINUX_4_OPT defcpt.c:84: initializer element is not constant make[1]: *** [defcpt.o] Error 1 make: *** [xacembly] Error 2 Richard M. Gronostajski Assoc. Staff Lerner Research Institute, Cleveland Clinic Foundation Dept. of Cancer Biology, NB40, 9500 Euclid Ave. Cleveland, OH. 44195 Assoc. Prof., Case Western Reserve Univ., Dept. of Biochemistry Phone:216-445-6629 Fax:216-445-6269 CCF homepage http://www.lerner.ccf.org/pi/gronosta.html CWRU homepage http://www.cwru.edu/med/biochemistry/faculty/gronostajski.html C. elegans Webpage http://elegans.swmed.edu/Worm_labs/Gronostajski/ From owner-acedb@net.bio.net Wed Sep 08 13:40:00 1999 Path: biosci!newshost.lanl.gov!logbridge.uoregon.edu!newspeer1.nac.net!newspeer.monmouth.com!nf1.mgmt.sympatico.ca!news1.bellglobal.com!qcarh002.nortelnetworks.com!bcarh189.ca.nortel.com!bmerhc5e.ca.nortel.com!bcarh8ab.ca.nortel.com!not-for-mail From: "Young, George [CAR:9F12:EXCH]" Newsgroups: a.bsu.programming,alt.music.fleetwood-mac,alt.radio.networks.npr,alt.tv.twin-peaks,bionet.software,bionet.software.acedb,bionet.software.gcg Subject: Re: =?iso-8859-1?Q?=B3o=A6=5E=B1z=A5i=ADn=AC=DD=B2M=B7=A1?= Date: Wed, 08 Sep 1999 10:22:25 -0400 Organization: Nortel Networks Lines: 16 Message-ID: <37D67121.9EEA3898@americasm01.nt.com> References: <7q5apt$mu5@netnews.hinet.net> Reply-To: georgey@bnr.ca NNTP-Posting-Host: wcars0w1.ca.nortel.com Mime-Version: 1.0 Content-Type: text/plain; charset=iso-8859-1 Content-Transfer-Encoding: quoted-printable X-Mailer: Mozilla 4.6 [en] (X11; I; SunOS 5.6 sun4u) X-Accept-Language: en Xref: biosci bionet.software:24133 bionet.software.acedb:2601 bionet.software.gcg:3709 Peter wrote: > =A7=DA=A6=B3=A4@=C0=C9=B0=AA=B0=AA=B0=AA=B0=AA=AC=EC=A7=DE=AA=D1=ADn=BD= =E6,=A8=C6=C3=F6=BE=F7=B1K,=A4=A3=AF=E0=A6b=B9q=B8=A3=A4W=BB=A1=A5X,=BD=D0= =A8=A3=BD=CC.=A4=A3=B9L=A5=A6=A8C=A6~=C1=C8=BF=FA, > =B8=EA=B5=A6=B7|=A4@=BC=CB=B8=C9=A7U=A5=A6.=B3o=A5=AB=ACO=A8=BA=A4@=AEa= =A4=BD=A5q?=A6]=AC=B0=B6q=A4=D6,=A8C=A4H=B3=CC=A6h=A4Q=B1i.=B7Q=A4F=B8=D1= =BD=D0=B9q > :0939872586 (O.)89215405 (H.)32334286 =AE}=BF=B3=BD=E5 Seems Peter is from Taepei and writes Chineese Unicode set. Unfortunately= his Outlook client doesn't tell us this. Just ignore unless you are really interested= =2E From owner-acedb@net.bio.net Wed Sep 08 14:51:00 1999 Path: biosci!pravda.ucr.edu!ihnp4.ucsd.edu!gondor!newshub.sdsu.edu!newsfeed.berkeley.edu!newsfeed.direct.ca!logbridge.uoregon.edu!newsgate.cuhk.edu.hk!netnews.hinet.net!spring.edu.tw!feeder.seed.net.tw!news.seed.net.tw!not-for-mail From: "christian" Newsgroups: at.network.ping,bionet.software,bionet.software.acedb,microsoft.public.tw.ie30,microsoft.public.tw.ie40,microsoft.public.tw.inetexplorer.ie5beta,microsoft.public.win95.networking,microsoft.public.win98.networking,tw.announce Subject: Ãø±oªº¾÷·|~~§A¤£®e¿ù¹L³á~~!! Date: 8 Sep 1999 15:44:01 GMT Organization: SEEDNet News Service Lines: 28 Message-ID: <7r6081$9vj$3@news.seed.net.tw> NNTP-Posting-Host: cl89-137.dialup.seed.net.tw X-Priority: 3 X-MSMail-Priority: Normal X-Newsreader: Microsoft Outlook Express 5.00.2014.211 X-Mimeole: Produced By Microsoft MimeOLE V5.00.2014.211 Xref: biosci bionet.software:24136 bionet.software.acedb:2603 ¥H¤U§¹¥þ§K¶O¡A¤S¦³¿úÁÈ cf168¹q¤l³ø,¤@¥÷ÄÝ©ó±zªº±M·~ºô¸ô¹q¤l³ø cf168¹q¤l³ø¨C¤ë´£¼·¼s§i§Q¼íª¾80%»P­q¤á¦@¨É,Åý±z ¦b®a¬Ý§K¶O¹q¤l³ø,¨C¤ëÁÙ¦³Á~¤ô¥i®³ §Y¤é°_¥u­n±z¤Wºô­q¾\cf168±M·~ºô¸ô¹q¤l³ø,(¤£¦ý §¹¥þ§K¶O,µL¥ô¦ó±ø¥ó),¨C¤ëÁÙ¦³©T©wÁ~¤ô¥i®³(¬ù¥x¹ô 5¸U¥H¤W),¤£¥Î©â¼ú,¤H¤H³q³q¦³¼ú ~~~~~~~~~~ ºô§}: http://www.cf168.com.tw ~~~~~~~~~~~~~~~~~~~~~~~~~~ ¦]cf168¹q¤l³ø¤§§Q¼í¥u­­·|­û¦@¨É,¥B¬°«O»Ù·|­ûÅv¯q ,±Ä·|­û±ÀÂ˨î,±ý¤J·|ªÌ»Ý¥Ñ·|­û±ÀÂˤè¥i¤J·| ¦b¦¹´£¨Ñ¤U¦C¸ê®Æ,¨Ñ¦³¿³½ìªÌ­q¾\¥Î ±ÀÂˤH¡G±i¯qÄÁ ±ÀÂ˽s¸¹¡G934879047 ps:½s¸¹»Ý¥HÁä½L¿é¤J¤£¥i¥H¥Î½Æ»sªº ¦]¦¹¯¸ªñ¨Ó·¥¬°¼öªù,­Y¤@®É¶¡µLªkµn¿ý,½Ð¦h¸Õ´X¦¸ From owner-acedb@net.bio.net Thu Sep 09 00:56:00 1999 Path: biosci!USA.COM!invrep From: invrep@USA.COM Newsgroups: bionet.software.acedb Subject: ADV: Date: 8 Sep 1999 18:56:23 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 57 Sender: daemon@net.bio.net Distribution: world Message-ID: <989.283923.250619.invrep@usa.com> NNTP-Posting-Host: net.bio.net ''''''''''''''''''''''''''''''''''''''''''' ' To be removed, simply reply with the ' ' subject "remove". 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For info, just email: oppro39@bigfoot.com with subject 'ecard' To be removed, email: oppro39@bigfoot.com with subject 'remove' ~ The sure way to miss success - is to miss the opportunity. ~ 1510a6j456s41h-4 From owner-acedb@net.bio.net Fri Sep 10 10:59:00 1999 Path: biosci!newsfeed.stanford.edu!newsfeed.uchicago.edu!newsswitch.lcs.mit.edu!netnews.com!newspeer1.nac.net!easynet-tele!easynet.net!news.vas-net.net!server2.netnews.ja.net!pegasus.csx.cam.ac.uk!not-for-mail From: Tim Cutts Newsgroups: bionet.software.acedb Subject: querying timestamps Date: 10 Sep 1999 12:50:58 +0100 (BST) Organization: Linux Unlimited Lines: 7 Message-ID: NNTP-Posting-Host: rrw1000.sel.cam.ac.uk X-Newsreader: trn 4.0-test70 (17 January 1999) Originator: timc@news.chiark.greenend.org.uk ([127.0.0.1]) Is there any way in tace to get it to return only objects objects whose timestamps are after a particular date/time? Thanks in advance... Tim. From owner-acedb@net.bio.net Sat Sep 11 10:34:00 1999 Path: biosci!ANDROMEDA.TECTEL.COM.MX!sii96 From: sii96@ANDROMEDA.TECTEL.COM.MX (koplosw) Newsgroups: bionet.software.acedb Subject: eLectronic mktg & software....an Internet Goldmine! Date: 11 Sep 1999 04:33:56 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 37 Sender: daemon@net.bio.net Distribution: world Message-ID: <199909114471ZAA16373@werseryn.spir.fr> NNTP-Posting-Host: net.bio.net ELECTRONIC MARKETING Cyberpreneurs are increasing tremendously with the boom of the digital/electronic frontier. Electronic marketing is a proven method with a global market. It is more advantageous than conventional methods and the risk is minimal. The prospects are millions. SUCCESSFUL ITEMS FOUND IN CYBERSPACE The existence of the Information Superhighway narrows down to one important factor; information. It's been proven repeatedly that the ideal cyberspace products are are books, software, computer related materials, information, and services. PRODUCTION COSTS Regardless of the product/service, most experts agree you must be able to produce the product to keep your product acquisition costs DOWN. Because of the digital era and the medium created by the internet, many products can now be produced in-house, such as software, information, electronic books, internet services, etc... AN UNMATCHED SOLUTION & OPPORTUNITY : Now, you can access the CSM 2000 Package; software, information, internet services, and books. This is designed for entrepreneurs, existing businesses, and those starting a business of their own. The digital era has begun....it's not too late....but don't wait ! Fax your: name, email address, and phone# to 781-240-7796 A representative will contact you a.s.a.p The digital era has begun....it's not too late....but don't wait ! @Wdromed From owner-acedb@net.bio.net Sat Sep 11 13:47:00 1999 Path: biosci!newsfeed.stanford.edu!skynet.be!fu-berlin.de!news.uni-stuttgart.de!news.belwue.de!News.Uni-Marburg.DE!not-for-mail From: "Mandarin" Newsgroups: bionet.software.acedb Subject: free software Date: 11 Sep 1999 14:39:14 GMT Organization: HRZ Uni Marburg Lines: 5 Message-ID: <7rdpii$7pk$1@surz18.HRZ.Uni-Marburg.DE> NNTP-Posting-Host: pool134.mabi.de X-Priority: 3 X-MSMail-Priority: Normal X-Newsreader: Microsoft Outlook Express 5.00.2314.1300 X-MimeOLE: Produced By Microsoft MimeOLE V5.00.2314.1300 free software www.creasoftcorp.de From owner-acedb@net.bio.net Mon Sep 13 13:38:00 1999 Path: biosci!candseek.com!915602 From: 915602@candseek.com Newsgroups: bionet.software.acedb Subject: JOBOP Application Support Manager Date: 13 Sep 1999 07:37:52 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 78 Sender: daemon@net.bio.net Distribution: world Message-ID: <199909131437.HAA15218@net.bio.net> NNTP-Posting-Host: net.bio.net Since your email address was listed on a related web site page or database, I thought you might help. I am seeking an individual within the following conditions: I represent an industry leading provider of solutions for international trade logistics with installations throughout North America, South America, Europe, and Asia-Pacific. Currently, they are looking for an Application Support Manager for their Application Engineering group. In this role, an individual will be responsible for managing a multi- platform development/test environment. In addition, this individual will manage the Unix Administration and the Oracle/SQL Server Database tuning functions. The ideal candidate will have at least 5 years of management experience dealing specifically with Unix Administration functions (Solaris, HP, and AIX). In addition, this individual should have experience with Oracle and SQL Server database tuning and administration, as well as strong hardware sizing experience with Unix OS. Strong Unix OS tuning and LAN/WAN troubleshooting are also required for this position. For the right person, the salary can go as high as $110,000 with a generous benefits package. Geographic Location of Position: Northern Va If you know anyone that might be interested, please forward this to them or contact: Megan McCullough Diedre Moire Corporation Fax: 609-584-9575 Voice: 609-584-9000 ext 275 Email: 915602@candseek.com To permanently discontinue receiving employment opportunity notices from any and all help wanted advertisers using the Candidate Seeker system, click your "Reply" button and type the word "re- move" without spaces between the letters into the SUBJECT field then click the "Send" button. Your email address will be permanently filtered from ALL future job opportunity notifications sent via the Candidate Seeker system. To temporarily filter employment opportunity notices sent via the Candidate Seeker system, type the acronym "JOBOP" into your subject filter. All employment opportunity notices sent via the Candidate Seeker system contain the acronym "JOBOP" in the subject so they may be easily filtered or blocked if so desired. Other email addresses may be permanently deleted from future contact by emailing a single blank message from the desired address to nomail@candseek.com. Enter additional addresses into the body of the message and they will also be added to the "nomail" list Please feel free to contact the candidateseeker.com feedback line at 609-584-5499. Do not use this number for job related questions. All job related questions should be directed to the employer by replying to contact addresses or phone numbers indicated at the end of the job description message. Mailed By: candseek.com 510 Horizon Center Robbinsville, NJ 08691 From owner-acedb@net.bio.net Mon Sep 13 17:55:00 1999 Path: biosci!rutgers!nntp.upenn.edu!newsserver.jvnc.net!198.138.0.5!newshub.northeast.verio.net!newspeer.monmouth.com!dispose.news.demon.net!demon!colt.net!Pollux.Teleglobe.net!server-b.cs.interbusiness.it!news.tin.it!not-for-mail From: madQ Newsgroups: bionet.software.acedb Subject: Download Ia.n.i.!!! It's free! Date: 13 Sep 1999 17:45:45 GMT Organization: madQ Message-ID: <7rjd89$aks$482@nslave1.tin.it> NNTP-Posting-Host: a-sr3-30.tin.it X-Newsreader: madQ Lines: 4 Download Ia.n.i. RemoteControlSystem 1.2 beta. It's free!!! http://members.xoom.com/IaniSystem/ From owner-acedb@net.bio.net Tue Sep 14 11:46:00 1999 Path: biosci!newsfeed.stanford.edu!cyclone.bc.net!news.maxwell.syr.edu!nntp2.deja.com!nnrp1.deja.com!not-for-mail From: simonkelley@my-deja.com Newsgroups: bionet.software.acedb Subject: New acediff - checks return codes Date: Tue, 14 Sep 1999 12:31:19 GMT Organization: Deja.com - Share what you know. Learn what you don't. Lines: 19 Message-ID: <7rlf6n$elk$1@nnrp1.deja.com> NNTP-Posting-Host: 193.60.84.241 X-Article-Creation-Date: Tue Sep 14 12:21:09 1999 GMT X-Http-User-Agent: Mozilla/4.6 [en] (X11; I; Linux 2.0.36 i686) X-Http-Proxy: 1.0 soa.sanger.ac.uk:80 (Squid/2.1.PATCH2), 1.0 x33.deja.com:80 (Squid/1.1.22) for client 172.25.16.59, 193.60.84.241 In the past people have reported problems with acediff silently failing when disks fill up or other problems occur. I've updated the source so that it fails noisily and returns a non-zero exit code in such circumstances. The source and some useful binaries are in /pub/acedb/acediff.checked on ftp.sanger.ac.uk and will be in the next source release of acedb. The observant amongst you will notice that the source is now under the GNU GPL, so to fore-stall further questions, yes, the next (4_8) release of acedb will be GPL'd. Sent via Deja.com http://www.deja.com/ Share what you know. Learn what you don't. From owner-acedb@net.bio.net Tue Sep 14 15:07:00 1999 Path: biosci!newsfeed.stanford.edu!cyclone.bc.net!newsfeed.direct.ca!newspeer.monmouth.com!nntp2.deja.com!nnrp1.deja.com!not-for-mail From: gudmunt@my-deja.com Newsgroups: bionet.software.acedb Subject: Re: New acediff - checks return codes Date: Tue, 14 Sep 1999 15:51:50 GMT Organization: Deja.com - Share what you know. Learn what you don't. Lines: 37 Message-ID: <7rlqui$nhs$1@nnrp1.deja.com> References: <7rlf6n$elk$1@nnrp1.deja.com> NNTP-Posting-Host: 193.4.196.222 X-Article-Creation-Date: Tue Sep 14 14:56:20 1999 GMT X-Http-User-Agent: Mozilla/4.51 [en] (X11; I; Linux 2.2.5-15 i686) X-Http-Proxy: 1.0 proxy.decode.is:8080 (Squid/2.1.PATCH2), 1.0 x42.deja.com:80 (Squid/1.1.22) for client 172.18.2.4, 193.4.196.222 When can we expect version 4.8 to arrive? Will it support more advanced widget sets as you guys mention in your development plans? Gudmundur In article <7rlf6n$elk$1@nnrp1.deja.com>, simonkelley@my-deja.com wrote: > In the past people have reported problems with > acediff silently failing when disks fill up or > other problems occur. I've updated the source so > that it fails noisily and returns a non-zero exit > code in such circumstances. > > The source and some useful binaries are in > /pub/acedb/acediff.checked on ftp.sanger.ac.uk and > will be in the next source release of acedb. > > The observant amongst you will notice that the > source is now under the GNU GPL, so to fore-stall > further questions, yes, the next (4_8) release of > acedb will be GPL'd. > > Sent via Deja.com http://www.deja.com/ > Share what you know. Learn what you don't. > Sent via Deja.com http://www.deja.com/ Share what you know. Learn what you don't. From owner-acedb@net.bio.net Tue Sep 14 15:16:00 1999 Path: biosci!newsfeed.stanford.edu!logbridge.uoregon.edu!newsfeed.direct.ca!newspeer.monmouth.com!nntp2.deja.com!nnrp1.deja.com!not-for-mail From: mummi@bigfoot.com Newsgroups: bionet.software.acedb Subject: Re: New acediff - checks return codes Date: Tue, 14 Sep 1999 15:55:26 GMT Organization: Deja.com - Share what you know. Learn what you don't. Lines: 33 Message-ID: <7rlr5a$nk8$1@nnrp1.deja.com> References: <7rlf6n$elk$1@nnrp1.deja.com> NNTP-Posting-Host: 193.4.196.222 X-Article-Creation-Date: Tue Sep 14 15:55:26 1999 GMT X-Http-User-Agent: Mozilla/4.51 [en] (X11; I; Linux 2.2.5-15 i686) X-Http-Proxy: 1.0 proxy.decode.is:8080 (Squid/2.1.PATCH2), 1.0 x41.deja.com:80 (Squid/1.1.22) for client 172.18.2.4, 193.4.196.222 X-MyDeja-Info: XMYDJUIDgudmunt When can we expect version 4.8? Will you guys be implementing a more advanced GUI widget set...GTK+ as I believe you mentioned in your development plans? Gudmundur In article <7rlf6n$elk$1@nnrp1.deja.com>, simonkelley@my-deja.com wrote: > In the past people have reported problems with > acediff silently failing when disks fill up or > other problems occur. I've updated the source so > that it fails noisily and returns a non-zero exit > code in such circumstances. > > The source and some useful binaries are in > /pub/acedb/acediff.checked on ftp.sanger.ac.uk and > will be in the next source release of acedb. > > The observant amongst you will notice that the > source is now under the GNU GPL, so to fore-stall > further questions, yes, the next (4_8) release of > acedb will be GPL'd. > > Sent via Deja.com http://www.deja.com/ > Share what you know. Learn what you don't. > Sent via Deja.com http://www.deja.com/ Share what you know. Learn what you don't. From owner-acedb@net.bio.net Tue Sep 14 23:42:00 1999 Path: biosci!U.WASHINGTON.EDU!janety From: janety@U.WASHINGTON.EDU (Janet Young) Newsgroups: bionet.software.acedb Subject: magic tags Date: 14 Sep 1999 17:42:02 -0700 Organization: Department of Molecular Biotechnology Lines: 23 Sender: daemon@net.bio.net Distribution: world Message-ID: <37DEF7DC.DE9B8564@u.washington.edu> Reply-To: janety@u.washington.edu NNTP-Posting-Host: net.bio.net Hi everyone I'm an inexperienced AceDBer trying to set up a new database. I've been looking at various models thinking about how best to get my data organised. My question is are magic tags in any way definable? I'm wondering about splitting ?Clone into ?BAC and ?cDNA but I want to still be able to use the pMap magic tags which clone uses. Do I have to stick with clone to achieve this or is there some easy way to tell acedb that the pMap tags in my BAC class should be Magic. Probably my best solution is to keep it as ?Clone and just expand the definition to cover everything I would have had in the two separate classes. Any advice? Thanks Janet Young ------------------------------------------------------------------- Dr. Janet Young Dept. Molecular Biotechnology University of Washington tel: (206) 685 9254 Health Sciences Building fax: (206) 685 7301 PO BOX 357730 email: janety@u.washington.edu Seattle, WA 98195, USA From owner-acedb@net.bio.net Wed Sep 15 03:10:00 1999 Path: biosci!MINDSPRING.COM!mhco From: mhco@MINDSPRING.COM Newsgroups: bionet.software.acedb Subject: Homeworkers Needed! Date: 14 Sep 1999 21:09:45 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 142 Sender: daemon@net.bio.net Distribution: world Message-ID: <170.852180.296751@ns.bigbear.net> NNTP-Posting-Host: net.bio.net Dear Future Associate, You Can Work At Home & Set Your Own Hours. Start earning Big Money in a short time NO Newspaper Advertising! 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From owner-acedb@net.bio.net Wed Sep 15 03:17:00 1999 Path: biosci!CART123.COM!l3w From: l3w@CART123.COM Newsgroups: bionet.software.acedb Subject: Time & Financial Freedom Can Be Yours IF You Work For It Date: 14 Sep 1999 21:17:29 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 48 Sender: daemon@net.bio.net Distribution: world Message-ID: <000028aa33e6$00000526$00001421@155.39.88.277> NNTP-Posting-Host: net.bio.net Hi, Do you want Financial and Time Freedom within 2-3 years? Do you have a work ethic above the norm? Do you have a white hot burning desire to be successful and wealthy? Do you know where you are headed in life? If you can honestly answer yes, keep reading! I don't want to waste your time or mine. This is NOT a program for everybody. Only the tough and determined will make it. If you are looking for a "get rich on $30 program" then delete this message. You won't find that here. 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From owner-acedb@net.bio.net Wed Sep 15 07:44:00 1999 Path: biosci!newsfeed.stanford.edu!logbridge.uoregon.edu!newspeer1.nac.net!news.new-york.net!uunet!ffx.uu.net!news1-gui.server.ntli.net!news5-gui.server.ntli.net!ntli.net!server4.netnews.ja.net!server2.netnews.ja.net!hgmp.mrc.ac.uk!not-for-mail From: Ed Griffiths Newsgroups: bionet.software.acedb Subject: Re: New acediff - checks return codes Date: Wed, 15 Sep 1999 09:37:37 +0100 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 39 Message-ID: <37DF5AD1.8CBCCECA@sanger.ac.uk> References: <7rlf6n$elk$1@nnrp1.deja.com> <7rlr5a$nk8$1@nnrp1.deja.com> NNTP-Posting-Host: griffin.sanger.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Trace: niobium.hgmp.mrc.ac.uk 937384657 26624 193.60.84.177 (15 Sep 1999 08:37:37 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk NNTP-Posting-Date: 15 Sep 1999 08:37:37 GMT X-Mailer: Mozilla 4.08 [en] (X11; I; OSF1 V4.0 alpha) mummi@bigfoot.com wrote: > > When can we expect version 4.8? Will you guys be implementing a more > advanced GUI widget set...GTK+ as I believe you mentioned in your > development plans? > > Gudmundur Version 4.8 of acedb will use GTK+ as its widget set. We hope this will mean that users will find that while the interface remains broadly the same it has been enhanced in many ways (proper menu bars, better menus, scrollbars, multi-line edit windows etc.). Currently acedb looks much the same but with GTK substituted for Xaw widgets, as time goes by more facilities will be added which will make acedb easier to use, particularly for new users who are used to the existing CDE/Windows type styles of user interfaces. Version of 4.8 is currently under test by users at the Sanger Centre and I guess our target is to release it to the wider community sometime before Christmas. Ed. -- ------------------------------------------------------------------------------ | Ed Griffiths, Informatics Group, | | The Sanger Centre, Wellcome Trust Genome Campus, | | Hinxton, Cambridge CB10 1SA, UK | | | | email: edgrif@sanger.ac.uk URL: http://www.sanger.ac.uk/Users/edgrif | | Tel: +44-1223-494780 (switch +44 1223 834244) Fax: +44 1223 494919 | ------------------------------------------------------------------------------ From owner-acedb@net.bio.net Wed Sep 15 14:02:00 1999 Path: biosci!pharma-transfer.com!beth From: beth@pharma-transfer.com ("Beth Cheung") Newsgroups: bionet.software.acedb Subject: funding opportunity Date: 15 Sep 1999 08:02:30 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 111 Sender: daemon@net.bio.net Distribution: world Message-ID: <000101beff84$32bf0ce0$67654180@FREE7771439> Reply-To: NNTP-Posting-Host: net.bio.net Dear Sir/Madam, Unfortunately I have been unable to contact you by phone to discuss our recently launched database service called Pharma-transfer. We asked researchers to submit to us a summary (~250 words) on their current research (one abstract per project if you have several). We then publish this in a journal and a web site and we highlight this to world wide pharmaceutical and biotechnology industries who specifically subscribe to us, in order to find projects to fund. If interested the industry would contact you directly and offer funding. If you or any of your colleagues wish to publish their abstract on our database in order to recieve funding, they can fax or e-mail them to me. If you require any help in drafting your abstract just sent us your best attempt and we will edit accordingly. There is no charge for this service at any time and we are happy to work at any stage of progression, and covering any research that may be of interest to our subscribing industries. I look forward to hearing from you and I apologize again for not being able to discuss this with you personally. Kind Regards Beth Cheung PHARMA-TRANSFER Dialogue In Drug Discovery What can we do for you? We specialise in medical publishing and can facilitate funding opportunities for researchers such as yourself. We will highlight your work in our journal and on our web-site, to pharmaceutical and biotechnology companies worldwide. They specifically subscribe to us in order to find projects to fund. Therefore, if they are interested in your research they would then contact you directly; clearly a powerful mechanism for potential funds. What do you have to do? Simply e-mail (in a word document - PC format) or fax us a short summary (250-300 words), for each project you are seeking funding for, including the amount of funding required, and that's it! After acknowledging receipt, we will publish your work on the web-site within 48 hrs and in the monthly update of our next issue. What sort of research are we looking for? We publish a diverse range including areas such as cardiovascular, gastroenterology, gene therapy, growth, development, immunology, infectious diseases, neuroscience, oncology, phytotherapeutics, reproduction, respiratory disease, transplantation and drug delivery, to name a few. It is important to realise the medium to long-term importance of regular basic research in biomedicine. At what stage of my research should I submit an abstract? We publish abstracts at various stages, from early research through to more developed projects where patents may have been filed or even granted. You may feel you have not progressed far enough in your research to publish anything, but even a broad-based summary of your aims will attract industries to your work for funding opportunities. So how much does this cost? Nothing!!! The service we provide is FREE of charge. How much time will this take? We do appreciate that you are busy but we estimate this will take no more than 25 minutes of your time, which could provide funding for your whole project. Could someone try to exploit the information I provide? If your research is in the early stages or at a later stage but you do not wish to provide too much information, then we suggest your abstract highlights the general aspects of your research, giving an overview as opposed to specific details. This will therefore not jeopardize any future patent application and will also serve to protect any delicate information from being exploited by others. What if I am already receiving funding? Most of the major grant awarding bodies have no objection to recipients receiving supplemental funding from industry. We advise you to contact your awarding body if you are unsure of any restrictions connected to your grant. What format should my abstract be in? We are happy to format your abstract for you with your appended contact details. How do I get further information? Visit our web-site!! http://www.pharma-transfer.com - If you would like to discuss this further or submit abstracts please do not hesitate to contact me: Contact Person: Beth Cheung Address: Ballantyne Ross Ltd Tel: +44 (0)171 724 5444 Fax: +44 (0)171 724 2632 E-mail: beth@pharma-transfer.com From owner-acedb@net.bio.net Wed Sep 15 15:17:00 1999 Path: biosci!UCSD.EDU!dsmith From: dsmith@UCSD.EDU (Doug Smith) Newsgroups: bionet.software.acedb Subject: Re: magic tags Date: 15 Sep 1999 09:17:33 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 60 Sender: daemon@net.bio.net Distribution: world Message-ID: <199909151610.JAA28320@biomail.ucsd.edu> NNTP-Posting-Host: net.bio.net What I have done, Janet, to solve this kind of problem is to set up the following in the subclasses.wrm file in the wspec subdirectory: Class cDNA_Clone Is_a_subclass_of Clone Filter cDNA Class YAC_Clone Is_a_subclass_of Clone Filter YAC Class Other_Clone Is_a_subclass_of Clone Filter "NOT cDNA, NOT YAC" Then ?Clone entries that have a 'cDNA' tag appear in the Main Window under subclass 'cDNA_Clone', those with a 'YAC' tag appear under subclass 'YAC_Clone', and those with neither 'cDNA' nor 'YAC' tags appear under subclass 'Other_Clone' It looks like you could do similarly, substituting 'BAC' for 'YAC' This may not be the only way to do this, but it works for me. Hope this helps ... -Doug >Hi everyone > >I'm an inexperienced AceDBer trying to set up a new database. I've been >looking at various models thinking about how best to get my data >organised. My question is are magic tags in any way definable? I'm >wondering about splitting ?Clone into ?BAC and ?cDNA but I want to still >be able to use the pMap magic tags which clone uses. Do I have to stick >with clone to achieve this or is there some easy way to tell acedb that >the pMap tags in my BAC class should be Magic. Probably my best solution >is to keep it as ?Clone and just expand the definition to cover >everything I would have had in the two separate classes. Any advice? > >Thanks > >Janet Young > >------------------------------------------------------------------- > Dr. Janet Young >Dept. Molecular Biotechnology >University of Washington tel: (206) 685 9254 >Health Sciences Building fax: (206) 685 7301 >PO BOX 357730 email: janety@u.washington.edu >Seattle, WA 98195, USA Doug Smith, Professor of Biology .... dsmith@ucsd.edu Department of Biology, 0116; UCSD; La Jolla CA 92093 phone: 858-534-2620 FAX: 858-534-7108 NOTE the area code: 619 changed to 858 in June, 1999! http://www-biology.ucsd.edu/others/dsmith/dnasys.html From owner-acedb@net.bio.net Wed Sep 15 15:19:00 1999 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.berkeley.edu!nntp.primenet.com!nntp.gctr.net!tank.news.pipex.net!pipex!server1.netnews.ja.net!pegasus.csx.cam.ac.uk!hgmp.mrc.ac.uk!biosci From: max@any.com.tw ("amy") Newsgroups: bionet.software.acedb Subject: ªwÄѤý°ê Date: 15 Sep 1999 17:08:25 +0100 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 15 Message-ID: <199909151626.AAA02333@www.alic042.com.tw> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: 8bit X-Trace: niobium.hgmp.mrc.ac.uk 937411705 4372 193.62.192.80 (15 Sep 1999 16:08:25 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk NNTP-Posting-Date: 15 Sep 1999 16:08:25 GMT X-Received: from mserv1.dl.ac.uk (root@mserv1.dl.ac.uk [148.79.160.65]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id RAA21665 for ; Wed, 15 Sep 1999 17:08:19 +0100 (BST) X-Received: from www.alic042.com.tw ([210.64.191.1]) by mserv1.dl.ac.uk with ESMTP id RAA05497 (8.8.8/5.4[ref postmaster@dl.ac.uk] for dl.ac.uk from max@any.com.tw); Wed, 15 Sep 1999 17:08:26 +0100 (BST) X-Precedence: first-class X-Received: from chin (h150.s15.ts30.hinet.net [163.30.15.150]) by www.alic042.com.tw (8.8.8/8.8.8) with ESMTP id AAA02333; Thu, 16 Sep 1999 00:26:27 +0800 (CST) X-Reply-To: support@ms15.hinet.net X-To: User@All.The.World X-Mailer: DiffondiCool V3.0 (W95/NT) Delfino Solutions (Build: Jun 14 1998) X-MIME-Autoconverted: from quoted-printable to 8bit by hgmp.mrc.ac.uk id RAA21666 ¤p©f¦³¦n®ø®§­n§i¶D¤j®a³á ªwÄѤý°ê¤S¦³¥X·s¤ù¤l¤F ¨Ò¦pWindows 2000 Beta3 (¥xÆW·L³n8¤ë10¤é¦b¥x¥_³Í®®¶º©±µoªíªº³á) Autodesk 3D MAX R3.0 ¥¿¦¡ª© Corel Draw 9.0 ¥¿¦¡ª© MAYA 2.0 §¹¾ã¥¿¦¡ª© µ¥µ¥~~·íµMÁÙ¦³¦n¦h·s¤ù¤l~~©Ò¥HÁÙ¬O½Ð¦U¦ì¤j­ô¤j©j¶i¥hÁ@Á@§a http://www.geocities.com/TimesSquare/Metro/3944/ --- From owner-acedb@net.bio.net Wed Sep 15 18:13:00 1999 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeeds.nerdc.ufl.edu!headwall.stanford.edu!newsfeed.stanford.edu!uchinews2!newsswitch.lcs.mit.edu!remarQ-easT!supernews.com!remarQ.com!tank.news.pipex.net!pipex!server1.netnews.ja.net!pegasus.csx.cam.ac.uk!hgmp.mrc.ac.uk!biosci From: max@any.com.tw ("¤pÄR") Newsgroups: bionet.software.acedb Subject: ªwÄѤý°ê Date: 15 Sep 1999 19:58:50 +0100 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 11 Message-ID: <199909151957.DAA23728@mail.lctc.edu.tw> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: 8bit X-Trace: niobium.hgmp.mrc.ac.uk 937421931 6403 193.62.192.80 (15 Sep 1999 18:58:51 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk NNTP-Posting-Date: 15 Sep 1999 18:58:51 GMT X-Received: from mserv1.dl.ac.uk (root@mserv1.dl.ac.uk [148.79.160.65]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id TAA29502 for ; Wed, 15 Sep 1999 19:58:43 +0100 (BST) X-Received: from mail.lctc.edu.tw (mail.lctc.edu.tw [203.64.173.4]) by mserv1.dl.ac.uk with ESMTP id TAA12565 (8.8.8/5.4[ref postmaster@dl.ac.uk] for dl.ac.uk from max@any.com.tw); Wed, 15 Sep 1999 19:58:41 +0100 (BST) X-Precedence: first-class X-Received: from chin (h244.s15.ts30.hinet.net [163.30.15.244]) by mail.lctc.edu.tw (8.8.7/8.8.7) with ESMTP id DAA23728; Thu, 16 Sep 1999 03:57:54 +0800 (CST) X-Reply-To: support@ms15.hinet.net X-To: DiffondiUser@All.The.World X-Mailer: DiffondiCool V3.0 (W95/NT) Delfino Solutions (Build: Jun 14 1998) X-MIME-Autoconverted: from quoted-printable to 8bit by hgmp.mrc.ac.uk id TAA29503 ¤p©f¤S¦³·s®ø®§­n§i¶D¦U¦ì¤j­ô¤j©j­Ì ªwÄѤý°ê¤S¶i·s¤ù¤l¤F ½Ð§Ö¶i¥h§ä±z©Ò­nªº§a http://www.geocities.com/TimesSquare/Metro/3944/ --- From owner-acedb@net.bio.net Wed Sep 15 20:28:00 1999 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!news.maxwell.syr.edu!newsfeed.tli.de!newsfeed01.btx.dtag.de!fu-berlin.de!server1.netnews.ja.net!pegasus.csx.cam.ac.uk!hgmp.mrc.ac.uk!biosci From: rd@sanger.ac.uk (Richard Durbin) Newsgroups: bionet.software.acedb Subject: Re: magic tags Date: 15 Sep 1999 22:05:30 +0100 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 16 Message-ID: <199909152105.WAA06919@griffin.sanger.ac.uk> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk X-Trace: niobium.hgmp.mrc.ac.uk 937429531 16026 193.62.192.80 (15 Sep 1999 21:05:31 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk NNTP-Posting-Date: 15 Sep 1999 21:05:31 GMT X-Received: from jess.sanger.ac.uk (jess.sanger.ac.uk [193.60.84.61]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id WAA20174 for ; Wed, 15 Sep 1999 22:05:29 +0100 (BST) X-Received: from griffin.sanger.ac.uk (rd@griffin [193.60.84.177]) by jess.sanger.ac.uk (8.8.8/8.8.7) with ESMTP id WAA04938 for ; Wed, 15 Sep 1999 22:05:28 +0100 (BST) X-Received: (from rd@localhost) by griffin.sanger.ac.uk (8.8.7/8.8.7) id WAA06919 for acedb@hgmp.mrc.ac.uk; Wed, 15 Sep 1999 22:05:27 +0100 (BST) X-To: acedb@hgmp.mrc.ac.uk For most magic tags and displays we have tried to make the tags work flexibly in arbitrary classes, as Janet wants. In particular the GMAP (standard vertical map) and GRID displays work that way, as do aspects of the FMAP (DNA sequence display). We are currently changing the models used for sequences to extend that flexibility and remove almost all the special position of the Sequence class (backward compatible, so that existing databases are not hurt). However, the PMAP display, which is the old horizontal physical map, is some of the oldest display code left in acedb, and is unfortunately quite rigid. You have to use the Clone class, and if you want to separate out different clone types you must use subclasses as Doug Smith describes. If you want more flexibility, use the vertical GMAP display - it is more powerful. Richard --- From owner-acedb@net.bio.net Thu Sep 16 13:56:00 1999 Path: biosci!newsfeed.stanford.edu!cyclone.bc.net!news.maxwell.syr.edu!nntp2.deja.com!nnrp1.deja.com!not-for-mail From: mummi@decode.is Newsgroups: bionet.software.acedb Subject: Query problems: subtags and constructed subtypes Date: Thu, 16 Sep 1999 14:36:56 GMT Organization: Deja.com - Share what you know. Learn what you don't. Lines: 28 Message-ID: <7rqva7$ddj$1@nnrp1.deja.com> NNTP-Posting-Host: 193.4.196.222 X-Article-Creation-Date: Thu Sep 16 14:36:56 1999 GMT X-Http-User-Agent: Mozilla/4.61 [en] (WinNT; I) X-Http-Proxy: 1.0 proxy.decode.is:8080 (Squid/2.1.PATCH2), 1.0 x33.deja.com:80 (Squid/1.1.22) for client 172.18.253.134, 193.4.196.222 X-MyDeja-Info: XMYDJUIDzgudmunt I have been having problems with querying subtags within constructed subtypes. I am trying to extract all the contigs from a certain region on Chromosome 6 (the Sanger FTP-data), querying the Map tag and continuing to the Map_position. This works just fine with, say, the STS objects which only have one Position value "find STS Map = Chr_6 & NEXT & NEXT > 70000 AND HERE <100000" but the contigs are maps with two location valus, Left and Right. I imagined that doing "find Map Map = Chr_6 & NEXT # Ends # Left >70000" would work or something similar, but none of the stuff I've tried worked. I wound up just picking the relevant contigs out by hand and into a keyset, but this query-problem keeps nagging me still. is it perhaps not possible to query such subtags (Ends split into Left and Right) inside a constructed subtype like Map_position? Thanks in advance, greetings from Iceland to everybody on the list ;) Gudmundur Sent via Deja.com http://www.deja.com/ Share what you know. Learn what you don't. From owner-acedb@net.bio.net Thu Sep 16 17:24:00 1999 Path: biosci!MYPAD.COM!goodfax From: goodfax@MYPAD.COM ("MS ASHA") Newsgroups: bionet.software.acedb Subject: SEND FAX TO 231 COUNTRIES THRU US Date: 16 Sep 1999 11:24:23 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 15 Sender: daemon@net.bio.net Distribution: world Message-ID: <199909170446.XAA04992@del2.vsnl.net.in> Reply-To: goodfax@mypad.com NNTP-Posting-Host: net.bio.net CHUCK OUT YOUR FAX MACHINE----- SEND FAX THRU US--TO ALL 231 COUNTRIES OF WORLD FOR JUST RS.25/- WE NOT ONLY SEND BUT ALL FILES --MS WORD,EXCEL,TIFF,GIFF,JPG,PCX--IN FACT WE SUPPORT 300 TYPES OF ATTACHMENT. LET US KNOW YOUR REQUIREMENTS MS ASHA ONE TIME POSTING--NO NEED FOR DELETE From owner-acedb@net.bio.net Fri Sep 17 09:43:00 1999 Path: biosci!fcrdcnews.NCIFCRF.GOV!washdc3-snf1!washdc3-snh1.gtei.net!crtntx1-snh1.gtei.net!su-news-hub1.bbnplanet.com!news.gtei.net!newsfeed.direct.ca!newshub.northeast.verio.net!news.new-york.net!uunet!ffx.uu.net!news3-gui.server.ntli.net!ntli.net!server4.netnews.ja.net!server2.netnews.ja.net!hgmp.mrc.ac.uk!biosci From: fw@sanger.ac.uk (Fred Wobus) Newsgroups: bionet.software.acedb Subject: Re: Query problems: subtags and constructed subtypes Date: 17 Sep 1999 11:20:41 +0100 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 84 Message-ID: References: <7rqva7$ddj$1@nnrp1.deja.com> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk Mime-Version: 1.0 Content-Type: TEXT/PLAIN; charset=US-ASCII X-Trace: niobium.hgmp.mrc.ac.uk 937563642 21522 193.62.192.80 (17 Sep 1999 10:20:42 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk NNTP-Posting-Date: 17 Sep 1999 10:20:42 GMT X-Received: from jess.sanger.ac.uk (jess.sanger.ac.uk [193.60.84.61]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id LAA20779 for ; Fri, 17 Sep 1999 11:20:38 +0100 (BST) X-Received: from adnah.sanger.ac.uk (fw@adnah [193.60.84.22]) by jess.sanger.ac.uk (8.8.8/8.8.7) with ESMTP id LAA13273; Fri, 17 Sep 1999 11:20:35 +0100 (BST) X-Received: from localhost (fw@localhost) by adnah.sanger.ac.uk (8.8.7/8.8.7) with ESMTP id LAA16933; Fri, 17 Sep 1999 11:20:35 +0100 (BST) X-Authentication-Warning: adnah.sanger.ac.uk: fw owned process doing -bs X-Sender: fw@adnah X-To: mummi@decode.is X-cc: acedb@hgmp.mrc.ac.uk X-In-Reply-To: <7rqva7$ddj$1@nnrp1.deja.com> I've found some suitable AQL queries for the problem that is described here. I tested them on the Sanger Chr6 data using acedb4.7l AQL has seen a lot of development since version 4.7, so you may encounter some problems if you start playing with advanced queries. We're currently testing our development version where most initial AQL problems have been fixed. Note that tace doesn't understand multiline queries (you can add a \ at the end of each line to wrap around). The textual formatting across multiple lines just looks nice and shows how the query is structured. Both queries make use of the compound notation to access a local tag. We dereference the object from the class by following the map tag (the arrow is the notation for following a tag). But once we've positioned mn (MapName) at that position we want to stay there in the object and go to the local tags position or left/right within the same object. Therefore the [] notation. On Thu, 16 Sep 1999 mummi@decode.is wrote: > I have been having problems with querying subtags within constructed > subtypes. I am trying to extract all the contigs from a certain region > on Chromosome 6 (the Sanger FTP-data), querying the Map tag and > continuing to the Map_position. This works just fine with, say, the STS > objects which only have one Position value > > "find STS Map = Chr_6 & NEXT & NEXT > 70000 AND HERE <100000" > select s, pos from s in class STS, mn in s->Map where mn = "Chr_6", pos in mn[Position] where pos > 70000 and pos < 100000 I get 200 lines in the result. > but the contigs are maps with two location valus, Left and Right. I > imagined that doing > > "find Map Map = Chr_6 & NEXT # Ends # Left >70000" > select m, l, r from m in class map, mn in m->Map where mn = "Chr_6", l in mn[left] where l > 70000, r in mn[right] The result table has 250 lines. > would work or something similar, but none of the stuff I've tried > worked. > I wound up just picking the relevant contigs out by hand and into a > keyset, but this query-problem keeps nagging me still. is it perhaps > not possible to query such subtags (Ends split into Left and Right) > inside a constructed subtype like Map_position? > > Thanks in advance, greetings from Iceland to everybody on the list ;) > > > Gudmundur > > > Sent via Deja.com http://www.deja.com/ > Share what you know. Learn what you don't. > ------------------------------------------------------------------------ Fred Wobus Phone: +44-(0)7971-085893 Web: http://www.sanger.ac.uk/~fw --- From owner-acedb@net.bio.net Sun Sep 19 05:56:00 1999 Path: biosci!MAILBR.COM.BR!wethankyou From: wethankyou@MAILBR.COM.BR Newsgroups: bionet.software.acedb Subject: Have Your Ever Considered ? ...........Adv. Date: 18 Sep 1999 23:55:54 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 79 Sender: daemon@net.bio.net Distribution: world Message-ID: <814.513720.697250@server> NNTP-Posting-Host: net.bio.net Have You Ever Considered Starting Your Own Business? If you have; This information may be valuable to you. 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From owner-acedb@net.bio.net Mon Sep 20 01:03:00 1999 Path: biosci!sprint.ca!suehan From: suehan@sprint.ca ("Hong Qian") Newsgroups: bionet.software.acedb Subject: Protein expression and purification Date: 19 Sep 1999 19:03:13 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 92 Sender: daemon@net.bio.net Distribution: world Message-ID: <001301bd7fbd$fb63a540$039294d1@hqian> NNTP-Posting-Host: net.bio.net This is a multi-part message in MIME format. ------=_NextPart_000_0010_01BD7F83.4B72CCE0 Content-Type: text/plain; charset="gb2312" Content-Transfer-Encoding: quoted-printable Do you have too many projects and limited time? If high level protein = expression is one of your goals, C&P Biotech is ready to help you with = sub-cloning and protein purification in E. coli. 1.. Sub-cloning, site-directed mutagenesis, large deletion and = insertion mutation. PRICE: US$ 500.00 per sample. 2.. 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------=_NextPart_000_0010_01BD7F83.4B72CCE0-- From owner-acedb@net.bio.net Mon Sep 20 07:48:00 1999 Path: biosci!AOL.COM!9j3473 From: 9j3473@AOL.COM Newsgroups: bionet.software.acedb Subject: Take Control of Your Life Date: 20 Sep 1999 01:47:50 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 31 Sender: daemon@net.bio.net Distribution: world Message-ID: <199909200847.BAA25427@net.bio.net> NNTP-Posting-Host: net.bio.net I am looking for a special person with a good work Ethic and an extraordinary desire who wants to earn $3000-$5000 per week in 30-45 days "THIS IS NOT MULTI-LEVEL MARKETING" We will give you the training and personal support you will need to ensure your success. WORK FROM THE PRIVACY OF YOUR OWN HOME If you are skeptical or you have tried things in the past that failed to live up to their promises, I guarantee this is different from anything else you have seen. 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NOT MLM. *FREE INFO 24 HOUR MESSAGE CALL 1-416-410-7530 rem - mike_watters998.yahoo.com From owner-acedb@net.bio.net Mon Sep 20 17:40:00 1999 Path: biosci!newshost.lanl.gov!logbridge.uoregon.edu!dispose.news.demon.net!demon!newspeer.clara.net!news.clara.net!remarQ-uK!remarQ.com!supernews.com!tank.news.pipex.net!pipex!server1.netnews.ja.net!pegasus.csx.cam.ac.uk!hgmp.mrc.ac.uk!biosci From: mieg@beta.crbm.cnrs-mop.fr (Danielle et jean Thierry-Mieg) Newsgroups: bionet.software.acedb Subject: subtags Date: 20 Sep 1999 19:33:28 +0100 Organization: MRC Human Genome Mapping Project Resource Centre Message-ID: <199909201833.UAA03568@beta.crbm.cnrs-mop.fr> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk X-Trace: niobium.hgmp.mrc.ac.uk 937852408 23269 193.62.192.80 (20 Sep 1999 18:33:28 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk NNTP-Posting-Date: 20 Sep 1999 18:33:28 GMT X-Received: from mserv1.dl.ac.uk (root@mserv1.dl.ac.uk [148.79.160.65]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id TAA06640 for ; Mon, 20 Sep 1999 19:33:21 +0100 (BST) X-Received: from xerxes.crbm.cnrs-mop.fr (root@xerxes.crbm.cnrs-mop.fr [193.49.189.10]) by mserv1.dl.ac.uk with ESMTP id TAA05420 (8.8.8/5.4[ref postmaster@dl.ac.uk] for dl.ac.uk from mieg@beta.crbm.cnrs-mop.fr); Mon, 20 Sep 1999 19:33:22 +0100 (BST) X-Precedence: first-class X-Received: from eta.crbm.cnrs-mop.fr (IDENT:root@eta [193.49.189.67]) by xerxes.crbm.cnrs-mop.fr (8.9.1a/jtpda-5.3.1) with ESMTP id UAA20939 ; Mon, 20 Sep 1999 20:33:17 +0200 X-Received: from beta.crbm.cnrs-mop.fr (beta.crbm.cnrs-mop.fr [193.49.189.62]) by eta.crbm.cnrs-mop.fr (8.9.1a/jtpda-5.3.1) with ESMTP id UAA04662 ; Mon, 20 Sep 1999 20:33:17 +0200 X-Received: from (mieg@localhost) by beta.crbm.cnrs-mop.fr (8.9.3/jtpda-5.3.1) id UAA03568 ; Mon, 20 Sep 1999 20:33:17 +0200 (MET DST) X-To: acedb@dl.ac.uk, mummi@decode.is Lines: 35 the query would be much more clear using table maker but it also works in direct query thanks to the fact theat the position is UNIQUE to get it right remember that a query works with an implict pointer inside the object "find STS Map = Chr_6 either returns false, on some STS or TRUE and points on the value Chr_6 what you want is find STS ( Map = Chr_6 # Left >70000) & ( Map = Chr_6 # Right < 100000) in this way you go back to Map = Chr_6 twice before looking for left or right example on the worm database acedb@beta.crbm.cnrs-mop.fr> query find rearrangement ( map = V # left = -0.316634 ) & ( map = V # Right = -0.22476) // Reponse: 48 bytes. // Found 1 objects // 1 Active Objects acedb@beta.crbm.cnrs-mop.fr> show map // Reponse: 144 bytes. Rearrangement adDf1059 Map V Ends Left -0.316634 Right -0.22476 // 1 object dumped // 1 Active Objects --- From owner-acedb@net.bio.net Mon Sep 20 17:45:00 1999 Path: biosci!newshost.lanl.gov!logbridge.uoregon.edu!dispose.news.demon.net!demon!nntp.news.xara.net!xara.net!gxn.net!easynet-tele!easynet.net!tank.news.pipex.net!pipex!server1.netnews.ja.net!hgmp.mrc.ac.uk!biosci From: mieg@beta.crbm.cnrs-mop.fr (Danielle et jean Thierry-Mieg) Newsgroups: bionet.software.acedb Subject: query map/pos Date: 20 Sep 1999 19:38:58 +0100 Organization: MRC Human Genome Mapping Project Resource Centre Message-ID: <199909201838.UAA03572@beta.crbm.cnrs-mop.fr> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk X-Trace: niobium.hgmp.mrc.ac.uk 937852738 23277 193.62.192.80 (20 Sep 1999 18:38:58 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk NNTP-Posting-Date: 20 Sep 1999 18:38:58 GMT X-Received: from mserv1.dl.ac.uk (root@mserv1.dl.ac.uk [148.79.160.65]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id TAA06830 for ; Mon, 20 Sep 1999 19:38:56 +0100 (BST) X-Received: from xerxes.crbm.cnrs-mop.fr (root@xerxes.crbm.cnrs-mop.fr [193.49.189.10]) by mserv1.dl.ac.uk with ESMTP id TAA05606 (8.8.8/5.4[ref postmaster@dl.ac.uk] for dl.ac.uk from mieg@beta.crbm.cnrs-mop.fr); Mon, 20 Sep 1999 19:39:01 +0100 (BST) X-Precedence: first-class X-Received: from eta.crbm.cnrs-mop.fr (IDENT:root@eta [193.49.189.67]) by xerxes.crbm.cnrs-mop.fr (8.9.1a/jtpda-5.3.1) with ESMTP id UAA20957 for ; Mon, 20 Sep 1999 20:38:54 +0200 X-Received: from beta.crbm.cnrs-mop.fr (beta.crbm.cnrs-mop.fr [193.49.189.62]) by eta.crbm.cnrs-mop.fr (8.9.1a/jtpda-5.3.1) with ESMTP id UAA04673 for ; Mon, 20 Sep 1999 20:38:54 +0200 X-Received: from (mieg@localhost) by beta.crbm.cnrs-mop.fr (8.9.3/jtpda-5.3.1) id UAA03572 for acedb@dl.ac.uk; Mon, 20 Sep 1999 20:38:54 +0200 (MET DST) X-To: acedb@dl.ac.uk Lines: 14 and of course the similar aql query is very clear select m, l, r from m in class map, mn in m->Map where mn = "Chr_6", l in mn[left] where l > 70000, r in mn[right] where r < 10000 but as mentioned by fred, the version of aql in the distributed acedb.4_7 is not yet complete so you may not yet been able to use it --- From owner-acedb@net.bio.net Mon Sep 20 17:50:00 1999 Path: biosci!newshost.lanl.gov!logbridge.uoregon.edu!newsfeed.direct.ca!newsfeed.wirehub.nl!tank.news.pipex.net!pipex!server1.netnews.ja.net!hgmp.mrc.ac.uk!biosci From: mieg@beta.crbm.cnrs-mop.fr (Danielle et jean Thierry-Mieg) Newsgroups: bionet.software.acedb Subject: query/position Date: 20 Sep 1999 19:43:16 +0100 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 19 Message-ID: <199909201843.UAA03574@beta.crbm.cnrs-mop.fr> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk X-Trace: niobium.hgmp.mrc.ac.uk 937852996 23403 193.62.192.80 (20 Sep 1999 18:43:16 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk NNTP-Posting-Date: 20 Sep 1999 18:43:16 GMT X-Received: from mserv1.dl.ac.uk (root@mserv1.dl.ac.uk [148.79.160.65]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id TAA07051 for ; Mon, 20 Sep 1999 19:43:13 +0100 (BST) X-Received: from xerxes.crbm.cnrs-mop.fr (root@xerxes.crbm.cnrs-mop.fr [193.49.189.10]) by mserv1.dl.ac.uk with ESMTP id TAA05884 (8.8.8/5.4[ref postmaster@dl.ac.uk] for dl.ac.uk from mieg@beta.crbm.cnrs-mop.fr); Mon, 20 Sep 1999 19:43:21 +0100 (BST) X-Precedence: first-class X-Received: from eta.crbm.cnrs-mop.fr (IDENT:root@eta [193.49.189.67]) by xerxes.crbm.cnrs-mop.fr (8.9.1a/jtpda-5.3.1) with ESMTP id UAA20976 for ; Mon, 20 Sep 1999 20:43:12 +0200 X-Received: from beta.crbm.cnrs-mop.fr (beta.crbm.cnrs-mop.fr [193.49.189.62]) by eta.crbm.cnrs-mop.fr (8.9.1a/jtpda-5.3.1) with ESMTP id UAA04682 for ; Mon, 20 Sep 1999 20:43:12 +0200 X-Received: from (mieg@localhost) by beta.crbm.cnrs-mop.fr (8.9.3/jtpda-5.3.1) id UAA03574 for acedb@dl.ac.uk; Mon, 20 Sep 1999 20:43:11 +0200 (MET DST) X-To: acedb@dl.ac.uk acedb@beta.crbm.cnrs-mop.fr> select m, l, r from m in class Rearrangement, mn in m->Map where mn = "V" , l in mn[left] where l = -0.316634, r in mn[right] where r = -0.22476 // Reponse: 104 bytes. // New Acedb Query Language : AQL beta release "adDf1059" -0.316634 -0.22476 // 1 Active Objects acedb@beta.crbm.cnrs-mop.fr> notice in the mail bmy presious mail a bug i said (in several lines) select m, l, r from m in class map, mn in m->Map where mn = "Chr_6", ... but of course i wanted to say from m in class Rearrangement (or sts, cetainly not class map) --- From owner-acedb@net.bio.net Tue Sep 21 07:37:00 1999 Path: biosci!newshost.lanl.gov!logbridge.uoregon.edu!nntp.abs.net!newsfeed.fast.net!uunet!ffx.uu.net!news3-gui.server.ntli.net!ntli.net!server4.netnews.ja.net!server2.netnews.ja.net!hgmp.mrc.ac.uk!biosci From: mieg@beta.crbm.cnrs-mop.fr (Danielle et jean Thierry-Mieg) Newsgroups: bionet.software.acedb Subject: magic pmap tags Date: 21 Sep 1999 09:30:22 +0100 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 16 Message-ID: <199909210830.KAA03932@beta.crbm.cnrs-mop.fr> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk X-Trace: niobium.hgmp.mrc.ac.uk 937902622 11262 193.62.192.80 (21 Sep 1999 08:30:22 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk NNTP-Posting-Date: 21 Sep 1999 08:30:22 GMT X-Received: from mserv1.dl.ac.uk (root@mserv1.dl.ac.uk [148.79.160.65]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id JAA08471 for ; Tue, 21 Sep 1999 09:30:18 +0100 (BST) X-Received: from xerxes.crbm.cnrs-mop.fr (root@xerxes.crbm.cnrs-mop.fr [193.49.189.10]) by mserv1.dl.ac.uk with ESMTP id JAA02198 (8.8.8/5.4[ref postmaster@dl.ac.uk] for dl.ac.uk from mieg@beta.crbm.cnrs-mop.fr); Tue, 21 Sep 1999 09:30:25 +0100 (BST) X-Precedence: first-class X-Received: from eta.crbm.cnrs-mop.fr (IDENT:root@eta [193.49.189.67]) by xerxes.crbm.cnrs-mop.fr (8.9.1a/jtpda-5.3.1) with ESMTP id KAA01301 for ; Tue, 21 Sep 1999 10:30:16 +0200 X-Received: from beta.crbm.cnrs-mop.fr (beta.crbm.cnrs-mop.fr [193.49.189.62]) by eta.crbm.cnrs-mop.fr (8.9.1a/jtpda-5.3.1) with ESMTP id KAA05540 for ; Tue, 21 Sep 1999 10:30:16 +0200 X-Received: from (mieg@localhost) by beta.crbm.cnrs-mop.fr (8.9.3/jtpda-5.3.1) id KAA03932 for acedb@dl.ac.uk; Tue, 21 Sep 1999 10:30:16 +0200 (MET DST) X-To: acedb@dl.ac.uk i confirm what Doud and Richard have said 1) the pamp is rigid 2) subclasses can help you the pupose of this not is to point a typo in doug's mail Class Other_Clone Is_a_subclass_of Clone Filter "NOT cDNA, NOT YAC" is not corret you want to change the coma into and AND Class Other_Clone Is_a_subclass_of Clone Filter "NOT cDNA AND NOT YAC" --- From owner-acedb@net.bio.net Tue Sep 21 07:42:00 1999 Path: biosci!newshost.lanl.gov!logbridge.uoregon.edu!dispose.news.demon.net!demon!newsfeed.icl.net!newspeer.clara.net!news.clara.net!btnet-peer!btnet!tank.news.pipex.net!pipex!server1.netnews.ja.net!hgmp.mrc.ac.uk!biosci From: fw@sanger.ac.uk (Fred Wobus) Newsgroups: bionet.software.acedb Subject: Re: query map/pos Date: 21 Sep 1999 09:36:08 +0100 Organization: MRC Human Genome Mapping Project Resource Centre Message-ID: References: <199909201838.UAA03572@beta.crbm.cnrs-mop.fr> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk Mime-Version: 1.0 Content-Type: TEXT/PLAIN; charset=US-ASCII X-Trace: niobium.hgmp.mrc.ac.uk 937902969 11382 193.62.192.80 (21 Sep 1999 08:36:09 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk NNTP-Posting-Date: 21 Sep 1999 08:36:09 GMT X-Received: from jess.sanger.ac.uk (jess.sanger.ac.uk [193.60.84.61]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id JAA08994 for ; Tue, 21 Sep 1999 09:36:05 +0100 (BST) X-Received: from adnah.sanger.ac.uk (fw@adnah [193.60.84.22]) by jess.sanger.ac.uk (8.8.8/8.8.7) with ESMTP id JAA31802; Tue, 21 Sep 1999 09:36:05 +0100 (BST) X-Received: from localhost (fw@localhost) by adnah.sanger.ac.uk (8.8.7/8.8.7) with ESMTP id JAA25313; Tue, 21 Sep 1999 09:36:05 +0100 (BST) X-Authentication-Warning: adnah.sanger.ac.uk: fw owned process doing -bs X-Sender: fw@adnah X-To: Danielle et jean Thierry-Mieg X-cc: acedb@hgmp.mrc.ac.uk X-In-Reply-To: <199909201838.UAA03572@beta.crbm.cnrs-mop.fr> Lines: 33 On 20 Sep 1999, Danielle et jean Thierry-Mieg wrote: > and of course the similar aql query is very clear > > select m, l, r > from m in class Rearrangement > mn in m->Map > where mn = "Chr_6", > l in mn[left] > where l > 70000, > r in mn[right] > where r < 10000 > > but as mentioned by fred, the version of aql in the distributed > acedb.4_7 is not yet complete so you may not yet been able to use it The query mentioned will work in ace4.7h and l, what I meant was that more complex queries, some of which are mentioned in my tutorial may not work yet. I have so far fixed many aspects of table variables, the evaluation of the bollean OR and the use of expressions in declarations. All will be available in a forthcoming release. Before you ask - there is no date for that yet. fw ------------------------------------------------------------------------ Fred Wobus Phone: +44-(0)7971-085893 Web: http://www.sanger.ac.uk/~fw --- From owner-acedb@net.bio.net Tue Sep 21 14:26:00 1999 Path: biosci!candseek.com!915613 From: 915613@candseek.com Newsgroups: bionet.software.acedb Subject: JOBOP Toxicology Scientist Date: 21 Sep 1999 08:26:15 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 74 Sender: daemon@net.bio.net Distribution: world Message-ID: <199909211526.IAA22083@net.bio.net> NNTP-Posting-Host: net.bio.net Since your email address was listed on a related web site page or database, I thought you might help. 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Mailed By: candseek.com 510 Horizon Center Robbinsville, NJ 08691 From owner-acedb@net.bio.net Wed Sep 22 13:33:00 1999 Path: biosci!newshost.lanl.gov!logbridge.uoregon.edu!newsfeed.icl.net!newspeer.clara.net!news.clara.net!remarQ-uK!remarQ.com!supernews.com!tank.news.pipex.net!pipex!server1.netnews.ja.net!pegasus.csx.cam.ac.uk!hgmp.mrc.ac.uk!biosci From: fw@sanger.ac.uk (Fred Wobus) Newsgroups: bionet.software.acedb Subject: unlimit stacksize solves parsing problem Date: 22 Sep 1999 15:26:22 +0100 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 46 Message-ID: NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk Mime-Version: 1.0 Content-Type: TEXT/PLAIN; charset=US-ASCII X-Trace: niobium.hgmp.mrc.ac.uk 938010383 11433 193.62.192.80 (22 Sep 1999 14:26:23 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk NNTP-Posting-Date: 22 Sep 1999 14:26:23 GMT X-Received: from jess.sanger.ac.uk (jess.sanger.ac.uk [193.60.84.61]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id PAA00244 for ; Wed, 22 Sep 1999 15:26:18 +0100 (BST) X-Received: from adnah.sanger.ac.uk (fw@adnah [193.60.84.22]) by jess.sanger.ac.uk (8.8.8/8.8.7) with ESMTP id PAA14645; Wed, 22 Sep 1999 15:26:01 +0100 (BST) X-Received: from localhost (fw@localhost) by adnah.sanger.ac.uk (8.8.7/8.8.7) with ESMTP id PAA01673; Wed, 22 Sep 1999 15:26:01 +0100 (BST) X-Authentication-Warning: adnah.sanger.ac.uk: fw owned process doing -bs X-Sender: fw@adnah X-To: acedb@hgmp.mrc.ac.uk X-cc: acedbfaq@s27w007.pswfs.gov I have found the solution to a common problem that people should know about. Q: When parsing huge ace-file my xace/tace process seg-faults ? A: explanation: When large objects in huge files are parsed the program grows considerably internally to deal with the datastructures that are involved. Some of those datastructures are recursive and program recursion uses up stack-space. The memory that is available to be used up by a programs stackframe isn't unlimited. For limits of that kind there exists a hard and a soft limit. The hard limit is machine dependent and usually set by the system adminstrators for a particular machine when it is installed and configured. However the soft limit for the stack-space is under user control and because it is usually lower that the hard limit, it may be useful to increase it before such large parse attempts. solution: The shell commands "limit" and "unlimit" control the soft limit for internal settings such as stacksize. Type 'limit' to enquire the current soft limits. You may get output like this: cputime unlimited filesize unlimited datasize 262144 kbytes stacksize 2048 kbytes coredumpsize 0 kbytes memoryuse 247856 kbytes vmemoryuse 1048576 kbytes descriptors 4096 For the parsing problem it's "stacksize" you're after, so to selectivly increase the limit on that value, type "unlimit stacksize". This command line may be included into the shell-startup file (such as .profile or .cshrc) so it is available all the time. If you type "unlimit" without an argument, all settings go to their maximum hard limit. ------------------------------------------------------------------------ Fred Wobus Phone: +44-(0)7971-085893 Web: http://www.sanger.ac.uk/~fw --- From owner-acedb@net.bio.net Wed Sep 22 16:39:00 1999 Path: biosci!newshost.lanl.gov!logbridge.uoregon.edu!dispose.news.demon.net!demon!easynet-tele!easynet.net!tank.news.pipex.net!pipex!server1.netnews.ja.net!pegasus.csx.cam.ac.uk!hgmp.mrc.ac.uk!biosci From: ogataro@tm.nagasaki-u.ac.jp ("ogata kenichi") Newsgroups: bionet.software.acedb Subject: Fwd: Error when read .ace file Date: 22 Sep 1999 18:32:02 +0100 Organization: MRC Human Genome Mapping Project Resource Centre Message-ID: <199909221733.AA00022@Yellow.tm.nagasaki-u.ac.jp> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii X-Trace: niobium.hgmp.mrc.ac.uk 938021523 13783 193.62.192.80 (22 Sep 1999 17:32:03 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk NNTP-Posting-Date: 22 Sep 1999 17:32:03 GMT X-Received: from amazon.tm.nagasaki-u.ac.jp (amazon.tm.nagasaki-u.ac.jp [133.45.224.212]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id SAA13170 for ; Wed, 22 Sep 1999 18:31:39 +0100 (BST) X-Received: from Yellow.tm.nagasaki-u.ac.jp ([133.45.224.93]) by amazon.tm.nagasaki-u.ac.jp (Netscape Messaging Server 3.6) with SMTP id AAA2EE1 for ; Thu, 23 Sep 1999 02:28:31 +0900 X-To: acedb@hgmp.mrc.ac.uk X-Mailer: AL-Mail32 Version 1.10 Lines: 82 Dear sirs I wrote a question about Schistoma DB around Sep.1st. Details are below. Recently, a person who is taking care of that DB solve this problem. So, if you have a this situation, go to "ftp://ftp.ebi.ac.uk/pub/databases/parasites/Schisto/" ,download and install it. Now it's ready to use! Thank you for concerning this trouble. Ken Ogata wrote: Dear Sirs I have a question. I couldn't read the Schistosoma data files into ACEDB. Here is the my situation. : I start to use "ACEDB", finish to download, install & reinitial the database. Next, I try to read the Schistosoma data files,dump1,2,3. ace, into ACEDB. But I couldn't make it. What I did for Schistosoma data is download the dump1,2,3.ace, options.wrm, models.wrm, subclasses.wrm, displays.wrm. Of course, I over wrote four files of .wrm on the originals . I attach the ERROR MESSAGE what I got through reading the ace files into database below. dump1.ace ---------------------------------------------------------------------- FATAL ERROR reported by program xace, in file lexsubs4.c, at line 1929: Attempt to create a key with emtpy name in classAuthor // Sorry for the crash, please report it, if it is reproducible ---------------------------------------------------------------------- dump2.ace ---------------------------- ERROR: parse error near line 159074 in No obj : No object name ---------------------------- dump3.ace ---------------------------- ERROR: parse error near line 209 in jap0009 : Unknown tag "japonicum" ---------------------------- The version of ACEDB what I use is 4.7l (bin.linux_libc6.4_7l.tar.Z) from Sanger and four .ace files of Schistoma data are from www.ebi.ac.uk. I don't know how I should do, so I'd like to have some advice. Thank you for your kindness. -- ---------------------------------- Ken Ogata ogataro@tm.nagasaki-u.ac.jp Information and Reference Center Institute of Tropical Medicine Nagasaki University ---------------------------------- --- --------------------------------------------------- KEN OGATA ogataro@tm.nagasaki-u.ac.jp Information and Reference Center Institute of Tropical Medicine Nagasaki University --- From owner-acedb@net.bio.net Thu Sep 23 10:13:00 1999 Path: biosci!FLORENCE.PAVILION.NET!kogui26 From: kogui26@FLORENCE.PAVILION.NET (kiseciv4) Newsgroups: bionet.software.acedb Subject: Direct-Internet...leads.. your.unreached.client Date: 23 Sep 1999 04:13:26 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 37 Sender: daemon@net.bio.net Distribution: world Message-ID: <199909232306OAA22957@mkiwesr.erg.com.hk> NNTP-Posting-Host: net.bio.net There are millions Internet users. Thousands are joining then booming internet market each day. 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Reach your leads before competition does! ]k From owner-acedb@net.bio.net Thu Sep 23 22:45:00 1999 Path: biosci!sb-roscoff.fr!est From: est@sb-roscoff.fr (laminaria.EST) Newsgroups: bionet.software.acedb Subject: compiling acembly Date: 23 Sep 1999 16:44:58 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 39 Sender: daemon@net.bio.net Distribution: world Message-ID: <9909232338.AA09549@olrik.sb-roscoff> NNTP-Posting-Host: net.bio.net Dear Acedb users, I am compiling ACEDB4.7l, however I got this message when I compiled aceserver : making aceserver for SOLARIS_4_RELEASE rpcgen -b -I -K -1 rpcace.x gcc -g -O2 -I/usr/openwin/include -DNO_LEFT_CASTING -DACEDB4 -I. -I. -I../wh -I../whooks -I../wstaden -DSOLARIS -c rpcace_sp.c In file included from rpcace_sp.c:53: rpcace_svc.c:9: sys/ttycom.h: No such file or directory *** Error code 1 make: Fatal error: Command failed for target `rpcace_sp.o' After reading the installation instruction I swaped the rpcace_svc.c file by the one provided with the distribution (rpcace_svc.crick) and aceserver compiled fine. However, when the compilation arrives at acembly, I get the following message : chmod 755 gifacemblyserver making acembly for SOLARIS_4_RELEASE ln -s ../wgnbk/gnbkserver.c . ln -s ../wgnbk/rpcgnbk.x . rpcgen -b -I -K -1 rpcgnbk.x gcc -g -O2 -I/usr/openwin/include -DNO_LEFT_CASTING -DACEDB4 -I. -I. -I../wh -I../whooks -I../wstaden -DSOLARIS -c gnbkserver.c ln -s ../wgnbk/gnbk.c . gcc -g -O2 -I/usr/openwin/include -DNO_LEFT_CASTING -DACEDB4 -I. -I. -I../wh -I../whooks -I../wstaden -DSOLARIS -c gnbk.c ln -s ../wgnbk/rpcgnbk_sp.c . rpcgen -b -I -K -1 rpcgnbk.x gcc -g -O2 -I/usr/openwin/include -DNO_LEFT_CASTING -DACEDB4 -I. -I. -I../wh -I../whooks -I../wstaden -DSOLARIS -c rpcgnbk_sp.c In file included from rpcgnbk_sp.c:37: rpcgnbk_svc.c:9: sys/ttycom.h: No such file or directory *** Error code 1 make: Fatal error: Command failed for target `rpcgnbk_sp.o' So my question is : could someone please send me the correct file (equivalent of rpcace_svc.crick), that way I could finish the compilation? Thank you for reading my message. Yours Sincerely Florent Crepineau Station Biologique de Roscoff From owner-acedb@net.bio.net Thu Sep 23 23:40:00 1999 Path: biosci!U.WASHINGTON.EDU!janety From: janety@U.WASHINGTON.EDU (Janet Young) Newsgroups: bionet.software.acedb Subject: data entry Date: 23 Sep 1999 17:40:07 -0700 Organization: Department of Molecular Biotechnology Lines: 22 Sender: daemon@net.bio.net Distribution: world Message-ID: <37EAD4D3.DCB884F6@u.washington.edu> Reply-To: janety@u.washington.edu NNTP-Posting-Host: net.bio.net Hi I have a stupid question for you all. I am setting up an acedb database and trying to convince other less unix-friendly people in the lab that it's going to be easy to use. My question is about data entry - I am perfectly happy to use .ace files but it might reassure others to know there are ways of 'pointing and clicking' to add data. I found the way to add information to an entry (use update on third mouse button menu) but is there a way to add a new object? Maybe the easiest way is just to explain use of the .ace file but I'm not sure. Thanks Janet Young ------------------------------------------------------------------- Dr. Janet Young Dept. Molecular Biotechnology University of Washington tel: (206) 685 9254 Health Sciences Building fax: (206) 685 7301 PO BOX 357730 email: janety@u.washington.edu Seattle, WA 98195, USA From owner-acedb@net.bio.net Fri Sep 24 01:08:00 1999 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!news.maxwell.syr.edu!howland.erols.net!newspump.sol.net!news.execpc.com!newspeer.sol.net!nntp.msen.com!206.132.58.120.MISMATCH!gw22.nn.bcandid.com!gate.bCandid.com!typ12.nn.bcandid.com.POSTED!not-for-mail From: fehceu@aol.com Newsgroups: bionet.software.acedb Subject: The Best Source For Finding What You Need 483 Lines: 8 Message-ID: NNTP-Posting-Host: 38.30.163.17 X-Trace: typ12.nn.bcandid.com 938138403 38.30.163.17 (Thu, 23 Sep 1999 22:00:03 EDT) NNTP-Posting-Date: Thu, 23 Sep 1999 22:00:03 EDT Date: Fri, 24 Sep 1999 02:00:03 GMT Hi, My name is Ellie and I just stumbled across what has to be the BEST source on the internet! Its totally free and easy to have the most fun ever! http://www.amylinks.com/ Visit Amys Links, its totally worth it! demiowmwjfp From owner-acedb@net.bio.net Fri Sep 24 03:57:00 1999 Path: biosci!newshost.lanl.gov!logbridge.uoregon.edu!fu-berlin.de!server1.netnews.ja.net!hgmp.mrc.ac.uk!biosci From: mieg@beta.crbm.cnrs-mop.fr (Danielle et jean Thierry-Mieg) Newsgroups: bionet.software.acedb Subject: data entry Date: 24 Sep 1999 05:50:07 +0100 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 20 Message-ID: <199909240449.GAA06315@beta.crbm.cnrs-mop.fr> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk X-Trace: niobium.hgmp.mrc.ac.uk 938148608 29359 193.62.192.80 (24 Sep 1999 04:50:08 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk NNTP-Posting-Date: 24 Sep 1999 04:50:08 GMT X-Received: from mserv1.dl.ac.uk (root@mserv1.dl.ac.uk [148.79.160.65]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id FAA01034 for ; Fri, 24 Sep 1999 05:50:03 +0100 (BST) X-Received: from xerxes.crbm.cnrs-mop.fr (root@xerxes.crbm.cnrs-mop.fr [193.49.189.10]) by mserv1.dl.ac.uk with ESMTP id FAA14061 (8.8.8/5.4[ref postmaster@dl.ac.uk] for dl.ac.uk from mieg@beta.crbm.cnrs-mop.fr); Fri, 24 Sep 1999 05:50:05 +0100 (BST) X-Precedence: first-class X-Received: from eta.crbm.cnrs-mop.fr (IDENT:root@eta [193.49.189.67]) by xerxes.crbm.cnrs-mop.fr (8.9.1a/jtpda-5.3.1) with ESMTP id GAA26390 for ; Fri, 24 Sep 1999 06:50:01 +0200 X-Received: from beta.crbm.cnrs-mop.fr (beta.crbm.cnrs-mop.fr [193.49.189.62]) by eta.crbm.cnrs-mop.fr (8.9.1a/jtpda-5.3.1) with ESMTP id GAA15525 for ; Fri, 24 Sep 1999 06:50:01 +0200 X-Received: from (mieg@localhost) by beta.crbm.cnrs-mop.fr (8.9.3/jtpda-5.3.1) id GAA06315 for acedb@dl.ac.uk; Fri, 24 Sep 1999 06:49:51 +0200 (MET DST) X-To: acedb@dl.ac.uk you can use add/alias/delete from the menu Edit in the main window this will open a dialog to edit data however we globally recommand ace files because in this way you keep a record of what you do and it is mots often faster and easier the advantage of add/allias/rename or of the upate mode in objects is that you can simply mouse pick and you are warned against spleeling mistakes etc ========== notice also that in tree display, you may, from the menu toggle time-stamps which shows who/when data where edited there is a lso a list of touch objects in database/touched --- From owner-acedb@net.bio.net Fri Sep 24 04:02:00 1999 Path: biosci!newshost.lanl.gov!logbridge.uoregon.edu!fu-berlin.de!server1.netnews.ja.net!pegasus.csx.cam.ac.uk!hgmp.mrc.ac.uk!biosci From: mieg@beta.crbm.cnrs-mop.fr (Danielle et jean Thierry-Mieg) Newsgroups: bionet.software.acedb Subject: solaris compile Date: 24 Sep 1999 05:56:04 +0100 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 6 Message-ID: <199909240456.GAA06344@beta.crbm.cnrs-mop.fr> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk X-Trace: niobium.hgmp.mrc.ac.uk 938148964 29369 193.62.192.80 (24 Sep 1999 04:56:04 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk NNTP-Posting-Date: 24 Sep 1999 04:56:04 GMT X-Received: from mserv1.dl.ac.uk (root@mserv1.dl.ac.uk [148.79.160.65]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id FAA01192 for ; Fr