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From: evansj@ba.ars.usda.gov ("Jay Evans")
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Subject: postdoc- Honey bee genomics/immunity/expression
Date: 5 Nov 2001 15:38:58 -0000
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We have funding for a post-doc interested in genomic approaches to study =
disease resistance and larval development in honey bees.  Goal is to =
identify genes expressed by larval honey bees in response to bacterial =
pathogens, using subtractive and/or normalized cDNA libraries, as well as =
by screening with Drosophila orthologs.  Candidate clones will be screened =
for function and for variable expression across honey bee genotypes and =
ages.  Results will be integrated into an emerging functional-genomics =
view of honey bee development.  Project has laboratory, field, and =
informatics/comparative evolution components.  Sequencing, microarray and =
computing facilities are available.

Candidates must have a recent Ph.D. in Genetics or related field.  =
Knowledge of molecular-genetic techniques and computational and database =
skills required.  Knowledge of comparative genomics, social insect biology =
and insect immunity are desirable. This is a 2-year, full-time position, =
available immediately.  There are some citizenship restrictions.  Salary =
is $44,352 - $69,099, commensurate with experience, plus benefits. =20

Please contact Dr. Jay Evans at 301-504-5143, fax 301-504-8736, e-mail: =
evansj@ba.ars.usda.gov for information, and send applications (CV and list =
of thre references) to Jay Evans by email or at: USDA-ARS, Bee Research =
Laboratory,  Bldg. 476, Beltsville, MD 20705.  USDA is an equal opportunity=
 provider and employer.

related papers:

Evans, J. D., and Wheeler, D. E. (1999). "Differential gene expression =
between developing queens and workers in the honey bee, Apis mellifera." =
Proc. Nat. Acad. Sci. (USA), 96, 5575-5580.

Evans, J. D., and Wheeler, D. E. (2000). "Expression profiles during the =
honey bee caste program." Genome Biology, 2(1)1-6.

Evans, J. D., and Wheeler, D. E. (2001). "Gene expression and the =
evolution of insect polyphenisms." BioEssays, 23(1), 62-68.

Evans, J. D. (in press) "Gene-expression approach to larval health and =
development in honey bees", in Moritz, R.F.A., ed., Molecular mechanisms =
of disease tolerance in honey bees, 5 pp.


 Jay D. Evans
Bee Research Lab/USDA-ARS
BARC-East Bldg. 476
Beltsville, MD 20705  USA
301-504-5143
FAX 301-504-8736
http://www.barc.usda.gov/psi/brl/beenome.html

---


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Bio.com News & Updates
November 7, 2001
www.bio.com

The Life Sciences Portal

Jobs . News . Research . Reports . Software . Protocols . Tools
===========================================================================
CONTENTS:
===========================================================================

1.  Biotech News & Features: "Antitrust Lessons for Biotech"
2.  InFocus Webcast: Audio file for "Angiogenesis"
3.  Career Center: Set Up Your Free Profile Today
4.  Jobs of the Week: "Research Associate" and others
5.  Industry Reports and Software: "Molecules-3D Pro"
6.  Laboratory Protocols: "DNA Microarray Hybridization"

===========================================================================
1.  BIOTECH NEWS & FEATURES
===========================================================================


-Featured Drug Target: Cyclooxygenase
http://www.bio.com/Redirectors/LinkRedirect11_6.jhtml?link=1

What is the most commonly-taken drug today? It is an effective painkiller.
It reduces fever and inflammation when the body gets overzealous in its
defenses against infection and damage. It slows blood clotting, reducing
the chance of stroke and heart attack in susceptible individuals. And,
there is growing evidence that it is an effective addition to the fight
against cancer. This wonder drug is aspirin.

-Balancing Risks in the Licensing of Bioinformatics Tools
http://www.bio.com/Redirectors/LinkRedirect11_6.jhtml?link=2

Bioinformatics is driven by the creation of IT tools that efficiently
manipulate the vast amount of data generated by life science research.
Bioinformatic research tools can be obtained through licensing agreements,
in-house development, or acquisition of a bioinformatics venture. Of these
choices, licensing agreements provide immediate access to current
computational tools and provide the flexibility to switch to new products
as the industry matures.

-Antitrust Lessons for Biotech
http://www.bio.com/Redirectors/LinkRedirect11_6.jhtml?link=3

It seems that every day the newspapers report Microsoft's ongoing battles.
Bill Gates's defenders say "Let the software market perform it's own
shakeout." Others say Bill Gates is trying to monopolize the software
industry and that monopoly violates US antitrust laws. You might be
thinking, "How can antitrust have anything to do with me?
I'm not in the software business." Whether you are a senior executive
in a company or a researcher with a clever idea to patent, you might
want to spend some time thinking about antitrust laws.

-Cyclin B1 is Tumor Antigen, Cancer Vaccine Candidate
http://www.bio.com/Redirectors/LinkRedirect11_6.jhtml?link=4

Results from a study published in the November 2001 issue of the Journal
of Experimental Medicine demonstrate that the protein cyclin B1 is a newly
identified tumor antigen that holds promise as a candidate for the
development of a cancer vaccine
See:  <http://www.bio.com/file_temp/vaccines.pdf>

-Deep-Sea Sequencing
http://www.bio.com/Redirectors/LinkRedirect11_6.jhtml?link=5

Scientists funded in part by the National Science Foundation (NSF) and
affiliated from the University of Delaware and Amersham Biosciences, Inc.,
in Piscataway, New Jersey, have succeeded in conducting the first-ever DNA
sequencing experiments at sea. Using the research vessel Atlantis and
submersible Alvin, the team carried out a pioneering environmental genomic
study of the strange life that inhabits super-hot hydrothermal vents
almost two miles deep in the Pacific Ocean.

-Water Shows Surprising Behavior at Molecular Level
http://www.bio.com/Redirectors/LinkRedirect11_6.jhtml?link=6

The well understood peculiarities of water make life possible, but this
most common fluid continues to surprise scientists. In an article
published in the November 8 issue of the journal Nature, two University
of Maine chemists and a scientist at the National Institutes of Health
offer a new view of how water behaves at the scale of individual
molecules, especially in tight spaces.


For more Industry News, go to:
http://www.bio.com/industryanalysis/industryanalysis_news.jhtml

For more Research News, go to:
http://www.bio.com/newsfeatures/newsfeatures_research.jhtml


===========================================================================
2.  INFOCUS WEBCAST:
===========================================================================

*To listen to the audio file from our last panel discussion, "Therapeutic
Drug Targets: Angiogenesis," go to:
http://chat.bio.com:8000/audio/angiogenesis_11012001.mp3
(use any mp3 player to listen to archived audio files)

*To read the transcript of an interview with David Vaux, a pioneer in the
field of apoptosis, go to:
http://www.bio.com/Redirectors/LinkRedirect11_6.jhtml?link=7

*Our next InFocus feature, "Cell-Based Screening in Drug Discovery &
Development," begins with a panel discussion on Thursday, November 15 at
10:00am Pacific Time.
http://www.bio.com/Redirectors/LinkRedirect11_6.jhtml?link=8



===========================================================================
3.  CAREER CENTER
===========================================================================

Bio.com offers the most comprehensive online Career Center in the life
sciences industry.

Set up your free personal profile today at:
http://career.bio.com/pages/myresume.cfm?object=1&action=New

Browse all job postings:
http://career.bio.com/pages/featured.cfm?1


===========================================================================
4.  JOBS OF THE WEEK
===========================================================================

Look at what's new on Bio.com Career Center this week:

-Buck Institute for Age Research:  Research Associate - Hook Lab
http://career.bio.com/pages/jobsearch.cfm?object=5&job=774637&action=View

-Agensys:  Research Associate
http://career.bio.com/pages/jobsearch.cfm?object=5&job=774478&action=View

-Pharmaceutical Company:  Senior Scientist Formulation Drug Development
http://career.bio.com/pages/jobsearch.cfm?object=5&job=773808&action=View

-Pharmaceutical Company:  Director of Pharmacokinetics
http://career.bio.com/pages/jobsearch.cfm?object=5&job=774493&action=View

-Biopharmaceutical Company:  BioAnalytical Method Development Senior
Scientist
http://career.bio.com/pages/jobsearch.cfm?object=5&job=774836&action=View


Browse all jobs at http://career.bio.com/pages/featured.cfm


===========================================================================
5.  INDUSTRY REPORTS & SOFTWARE
===========================================================================

1.  Angiogenesis Inhibitors: A Detailed Analysis of Emerging Compounds
http://www.bio.com/Redirectors/LinkRedirect11_6.jhtml?link=9

2.  Drug Discovery Technology: A Combination of Opportunities
http://www.bio.com/Redirectors/LinkRedirect11_6.jhtml?link=10

3.  Molecules-3D Pro
http://www.bio.com/Redirectors/LinkRedirect11_6.jhtml?link=11

For more reports available on Bio.com, visit:
http://bio.com/store/store_publications.jhtml


===========================================================================
6.  LABORATORY PROTOCOLS
===========================================================================

Register here http://www.bioprotocol.com/register.jsp
for access to the highest quality collection of laboratory
protocols on the web, FREE!

*Preview some of our latest additions:

-Laser Capture Microdissection (LCM)
http://www.bioprotocol.com/transfer.jsp?pgId=10001

-DNA Microarray Hybridization
http://www.bioprotocol.com/transfer.jsp?pgId=10002

-High Efficiency Transformation of Yeast Cells
http://www.bioprotocol.com/transfer.jsp?pgId=10003


===========================================================================

This message is sent to <arrays@net.bio.net> per your request
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---


From owner-arrays@hgmp.mrc.ac.uk  Thu Nov  8 15:12:31 2001
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From: ASTONC@war.wyeth.com ("Christopher Aston")
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Subject: Postdoctoral position available at Wyeth Ayerst-Research,
	Princeton, NJ.
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A postdoctoral fellowship position focusing on technology development is =
available within the neuroscience transcriptional profiling group at Wyeth =
Ayerst Research. The role of the group is to use Affymetrix Genechips, =
real time quantitative PCR (Taqman) and laser capture microdissection to =
study gene expression patterns in model systems relevant to neuroscience =
programs. The successful candidate will become proficient in using these =
technologies and will develop related experimental approaches that can be =
used by other members in the group.

The work will focus specifically on issues related to transcription in the =
CNS. The projects include (1) design and use of exon-specific microarrays =
to investigate the role of alternate splicing in the CNS (2) development =
of high-throughput quantitative PCR schemes (3) development of internal =
standards and normalization schemes to reconcile microarray data with =
quantitative PCR data and (4) in silico analysis of promoter sequences in =
co-regulated genes identified by transcriptional profiling.

The ideal candidate will have laboratory experience in using molecular =
biology and genomic approaches. Experience with molecular biology software =
such as GCG is required. Candidates must be uninhibited in exploring the =
use of other bioinformatics tools. Familiarity using databases is a plus. =
Since this position will address issues that are specific to transcription =
in the CNS, a background in neuroscience is desirable. However, more =
importantly, candidates must be able to think creatively about experimental=
 design and technology development. Ability to work interactively in a =
multidisciplinary team environment is required. If interested, please send =
your CV to: Christopher Aston, PhD, Wyeth-Ayerst Research, CN-8000, =
Princeton, NJ, 08543-8000, astonc@war.wyeth.com.





---


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Join us this Thursday to hear leading scientists discuss the impact of
cell-based screening in drug discovery and development.

Bio.com's InFocus webcast, "Cell-Based Screening in Drug Discovery &
Development," will be broadcast live on November 15 at 10:00am
Pacific Time (1PM ET).

To join us for this discussion, go to:
http://www.bio.com/Redirectors/LinkRedirect11_6.jhtml?link=8

-Panelists:

Paul Negulescu, Ph.D.
Senior Vice President, Discovery Biology
Aurora Biosciences Corporation

Ole Thastrup, M.Sc. Pharm
Chief Technology Officer
BioImage A/S

Fergus R. McKenzie, Ph.D.
Section Manager, Cell Biology
Cardiff Laboratories
Amersham Biosciences

-InFocus Sponsors:

Amersham Biociences (http://amershambiosciences.com/na/)
Cole Parmer (http://www.coleparmer.com/)

=======================================================================

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them to rfreder@bio.com

** For complete instructions on how to tune in to Bio.com's
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** To listen to the audio file from our recent webcast on Therapeutic
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From owner-arrays@hgmp.mrc.ac.uk  Fri Nov 16 19:27:07 2001
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From: zorngibel@yahoo.de (zorngibel)
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Subject: oligonucleotide design software
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Dear newsgroup readers!

I am thinking of making an oligonucleotide chip and I am looking for
software which helps me in designing the oligos. My idea is that
repetetive sequences should be eliminated, that stemloop, GC-content,
length etc should be adjusted, and that specificity should be checked
e.g. by blasting of the oligosequence against databases. I was
searching the net a little bit for (ideally free) software that might
serve my purpose - without much success. Maybe some of you can help
me.

Thanks in advance!

W.Z.


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The Coded Electronic Life Library, or CELL, acts as a librarian of many
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and literature.  Experimental results can rapidly be put into
biological/functional context, extracting real knowledge from data. =20

Please take advantage of a free trial evaluation at
http://www.incellico.com/cellsuite_entitybrowser2.html.

For more information please contact me directly.

Andrew Pitlock
Client Relations
Incellico, Inc.
tel (919) 484-7222 ext 242
apitlock@incellico.com
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Bio.com News & Updates
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===========================================================================

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From owner-arrays@hgmp.mrc.ac.uk  Wed Nov 28 17:42:25 2001
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Dear Researchers:

The Coded Electronic Life Library, or CELL, acts as a librarian of many
public databases such as EMBL/GenBank, SWISSPROT, OMIM, Gene Ontologies
and Medline by automatically cross-referencing their respective data in
a searchable, ontology-based network.  It also merges over 40 naming
systems, ending the frustration that comes from many names being applied
to the same biological entity. =20

The unique Entity Browser interface allows the user to graphically
browse the ontological relationships.  Using the CELL Entity Browser,
you can visually navigate the ontological relationships between genes,
proteins, organisms, biochemical pathways, disease models, tissue types
and literature.  Experimental results can rapidly be put into
biological/functional context, extracting real knowledge from data. =20

Please take advantage of a free trial evaluation at
http://www.incellico.com/cellsuite_entitybrowser2.html.

For more information please contact me directly.


Andrew Pitlock
Account Executive - Client Relations
Incellico, Inc.
tel (919) 484-7222 ext 242
http://www.incellico.com

---


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Bio.com News & Updates
November 29, 2001
www.bio.com

The Life Sciences Portal

Jobs . News . Research . Reports . Software . Protocols . Tools
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CONTENTS:
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1.  Biotech News & Features: "Gravity Affects Sperm Behavior"
2.  InFocus Webcast: Cell-Based Screening in Drug Discovery
3.  Career Center: Set Up Your Free Profile Today
4.  Jobs of the Week: "Staff Scientist"
5.  Featured Employer:  Roche Molecular Systems
6.  Industry Reports and Software: Drug Discovery Industry Review
7.  Investment Research: Free Investment Research from SCO Group
8.  Product Highlight:  MegaBACE 4000 DNA Analysis System

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1.  BIOTECH NEWS & FEATURES
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Gravity Affects Sperm Behaviour
http://www.bio.com/Redirectors/LinkRedirect11_28.jhtml?link=1
According to Joseph Tash, a NASA-supported physiologist at the University
Of Kansas Medical Center, sperm behave differently in the near-weightless
environment of space than they do on Earth. Whether these changes will
impair or aid fertility, he doesn't yet know. But, says Tash, it's
becoming increasingly clear that in outer space, fertilization-of humans,
of animals, and even of plants-will very likely be affected.

Native Corn Found to be Contaminated with Foreign Genes
http://www.bio.com/Redirectors/LinkRedirect11_28.jhtml?link=2
Some of Mexico's native varieties of corn grown in remote regions have
Been contaminated by transgenic DNA, a finding that has both surprised and
dismayed the University of California, Berkeley, researchers who made the
discovery.

Bioinformatics Tool Predicts Higher Human Gene Number
http://www.bio.com/Redirectors/LinkRedirect11_28.jhtml?link=3
In order to study genes for a wide variety of research, diagnostic, or
therapeutic purposes, scientists use computer programs that analyze DNA
sequences. These programs indicate where pieces of genes are located
within what is frequently a vast and complex genetic landscape. Although
conventional programs detect many parts of genes with ease, they fail when
it comes to detecting two important elements-first exons and promoters.

Hubble Detects Atmosphere on Distant Star
http://www.bio.com/Redirectors/LinkRedirect11_28.jhtml?link=4
Astronomers using NASA's Hubble Space Telescope have made the first direct
detection and chemical analysis of the atmosphere of a planet outside our
solar system. Their unique observations demonstrate it is possible with
Hubble and other telescopes to measure the chemical makeup of extrasolar
planets' atmospheres and potentially to search for chemical markers of
life beyond Earth.

A Genomic-Systems Biology Map for Cardiovascular Function
http://www.bio.com/Redirectors/LinkRedirect11_28.jhtml?link=5
By combining gene traits with biological functions, Medical College of
Wisconsin researchers have made the first global assessment of
cardiovascular function in rats. Their paper is published in the current
issue of Science.


For more Industry News, go to:
http://www.bio.com/industryanalysis/industryanalysis_news.jhtml

For more Research News, go to:
http://www.bio.com/newsfeatures/newsfeatures_research.jhtml


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2.  INFOCUS WEBCAST:
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Bio.com's InFocus series examines the cutting-edge technologies that are
driving advances in the biomolecular sciences. InFocus content comprises
the latest methods and research trends in academia and industry and
features exclusive interviews and live, streaming audio webcasts with
leaders in the field.

*To listen to the audio file of our last panel webcast,
"Cell-Based Screening in Drug Discovery & Development,"
go to:
http://chat.bio.com:8000/audio/cellscreen_11152001.mp3
(use any mp3 player to listen to archived audio files)

*To read the transcript of the webcast, go to:
http://www.bio.com/file_temp/cellscreen.pdf

*Our next InFocus feature, "DNA Microarrays: Platforms and Applications,"
begins with a panel webcast on Thursday, December 6 at 1:00pm
Pacific Time. For details, go to:
http://www.bio.com/Redirectors/LinkRedirect11_28.jhtml?link=6


*In the month of December we will host a special webcast on 'real world'
applications of PCR, including biodefense applications.
Date and time TBA.


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3.  CAREER CENTER
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Bio.com offers the most comprehensive online Career Center in the life
sciences industry.

Set up your free personal profile today at:
http://career.bio.com/pages/myresume.cfm?object=1&action=New

Browse all job postings:
http://career.bio.com/pages/featured.cfm?1


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4.  JOBS OF THE WEEK
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Look at what's new on Bio.com Career Center this week:

1.  Celera Diagnostics:  Staff Scientist
http://career.bio.com/pages/jobsearch.cfm?object=5&job=775570&action=View

2.  Itrac, LLC:  Scientist Level I/II - Formulation
http://career.bio.com/pages/jobsearch.cfm?object=5&job=775259&action=View

3.  Biotechnology Company, Missouri:  Business Applications Specialist
http://career.bio.com/pages/jobsearch.cfm?object=5&job=775376&action=View

4.  European Biopharmaceutical Company, California:
Sr. Research Associate- Upstream Process Development
http://career.bio.com/pages/jobsearch.cfm?object=5&job=775269&action=View

5.  Therapeutic Biotechnology Company, California:  Sr. Molecular
Immunologist
http://career.bio.com/pages/jobsearch.cfm?object=5&job=775167&action=View


Browse all jobs at http://career.bio.com/pages/featured.cfm


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5.  FEATURED EMPLOYER
===========================================================================

At Roche Diagnostics, we use our Nobel prize-winning PCR technology to
push the limits of diagnostics for genetic and viral discoveries. We
currently are seeking capable and experienced individuals for our Alameda
and Pleasanton (Northern California) campuses.
We offer an excellent compensation and benefits program, including
matching 401(k), a pension plan, 100% tuition reimbursement, health club
discounts and childcare assistance.

http://www.roche.com/diagnostics/content/molsys/f_4.html


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6.  INDUSTRY REPORTS & SOFTWARE
===========================================================================

1.  Target Identification and Validation
http://www.bio.com/Redirectors/LinkRedirect11_20.jhtml?link=7

2.  Drug Discovery Industry Review
http://www.bio.com/Redirectors/LinkRedirect11_20.jhtml?link=8

3.  LABTrack Software
http://www.bio.com/Redirectors/LinkRedirect11_20.jhtml?link=9


For more reports available on Bio.com, visit:
http://bio.com/store/store_publications.jhtml


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7.  INVESTMENT RESEARCH
===========================================================================

SCO Financial Group, a registered investment advisor focused on
identifying emerging growth companies in the healthcare sectors,
has made its investment research available, for free, to online investors
at Bio.com.

1.  Cytogen Corporation
http://www.bio.com/Redirectors/LinkRedirect11_28.jhtml?link=7

2.  Nastech Pharmaceutical Company, Inc.
http://www.bio.com/Redirectors/LinkRedirect11_28.jhtml?link=8

3.  Big Pharma's Pipelines Running Low-Eyes Turn to Biotech
http://www.bio.com/Redirectors/LinkRedirect11_28.jhtml?link=9

For more investment research, go to:
http://www.bio.com/industryanalysis/industryanalysis_financial.jhtml


===========================================================================
8.  PRODUCT HIGHLIGHT
===========================================================================

MegaBACE 4000 DNA Analysis System from Amersham Biosciences

384 capillaries:
   Four times the throughput
   Lowest sequencing cost per base
   More genomes per week
   Better efficiencies: less labor and less space

For more info on MegaBACE visit
http://www.amershambiosciences.com/application/MegaBACE/


===========================================================================

Sponsored by:  BioITWorld Conference & Expo

When:   March 12-14, 2002
Where:  World Trade Center Boston, Boston, Massachusetts

BioITWorld is the most comprehensive life sciences event focused
Exclusively on the integration and utilization of information
Technologies and bioinformatics across the entire life sciences
discovery and development processes.

Pre-Register using Priority Code: BC01 for significant savings off all
conference programs at
http://www.bioitworld.com


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