From owner-software@net.bio.net Fri Dec 01 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!elroy.jpl.nasa.gov!swrinde!howland.reston.ans.net!vixen.cso.uiuc.edu!sdd.hp.com!news1.best.com!shellx.best.com!shellx.best.com!not-for-mail From: hquinn@shellx.best.com (INTERNET ROCKHOUSE) Newsgroups: bionet.software Subject: Re: Windows equivalent of NIH Image Date: 1 Dec 1995 19:35:08 -0800 Organization: Best Internet Communications Lines: 26 Message-ID: <49ohhc$4nv@shellx.best.com> References: <49n15d$k1m@is.bbsrc.ac.uk> <49n1h2$k1m@is.bbsrc.ac.uk> NNTP-Posting-Host: shellx.best.com X-Newsreader: TIN [version 1.2 PL2] Tim Cutts (timc@chiark.chu.cam.ac.uk) wrote: : In article <49n1h2$k1m@is.bbsrc.ac.uk>, : Andy Phillips wrote: : >Sorry about the previous posting - I hit the wrong button. : > : >I'm looking for software to analyze digital images of Northern blots, SDS gels etc. I realize : >that NIH Image is ideal for my requirements, but unfortunately we have PCs here, not Macs. Does : >anyone know of an equivalent to Image that runs under Windows? It need not be freeware, but I : >don't want to spend thousands of pounds. : > : >Andy : NIH Image will run on the Macintosh emulator 'Executor' this is a : very inexpensive and surprisingly fast Mac emulator which is available : in three flavours; for DOS, for Linux and for NextSTEP. It has a : newsgroup dedicated to it in the comp.emulators.* hierarchy. : My feeble old 486DX-33 emulates a Mac considerably faster than my Mac : Classic. Just went through to the ARDI web site at www.ardi.com to be delighted to find that you can download a fully working demo (limited to 10 minutes sessions) fror free. Can't wait to try this mac emulator out. The file is around 3 megs, so beware.. From owner-software@net.bio.net Fri Dec 01 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!elroy.jpl.nasa.gov!swrinde!howland.reston.ans.net!vixen.cso.uiuc.edu!sdd.hp.com!news1.best.com!shellx.best.com!shellx.best.com!not-for-mail From: hquinn@shellx.best.com (INTERNET ROCKHOUSE) Newsgroups: bionet.software,bionet.molec-model,comp.os.linux.misc,bionet.xtallography Subject: Re: Compiling Molscript using g77 under Linux Followup-To: bionet.software,bionet.molec-model,comp.os.linux.misc,bionet.xtallography Date: 1 Dec 1995 19:23:18 -0800 Organization: Best Internet Communications Lines: 8 Message-ID: <49ogr6$t4g@shellx.best.com> References: <49mdst$2pv@cisun2000.unil.ch> NNTP-Posting-Host: shellx.best.com X-Newsreader: TIN [version 1.2 PL2] Xref: biosci bionet.software:14050 bionet.molec-model:702 comp.os.linux.misc:81524 bionet.xtallography:2211 Victor Jongeneel (vjongene@eliot.unil.ch) wrote: : Help with this will earn my eternal gratitude, plus a voucher for : all-you-can-eat pizza on your next visit to Lausanne! "all-you-can-eat pizza"? This sounds just too good to be true! From owner-software@net.bio.net Fri Dec 01 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!news.sprintlink.net!news.telalink.net!grumpy.midtenn.net!usenet From: userid@mail.midtenn.net (userid) Newsgroups: bionet.software Subject: Re: doom codes? Date: 1 Dec 1995 23:30:21 GMT Organization: Your Organization Lines: 9 Message-ID: <49o36d$i2p@grumpy.midtenn.net> References: <48olc1$9gh@ixnews4.ix.netcom.com> NNTP-Posting-Host: net136.midtenn.net Mime-Version: 1.0 X-Newsreader: WinVN 0.99.3 In article <48olc1$9gh@ixnews4.ix.netcom.com>, wkl1@ix.netcom.com says... > >I need some codes to help me survive in the world of DOOM. I now only >a very few codes and what I do now is not helping me. Can anyone give >me more codes. god mode:IDDQD keys and weapons:idkfa From owner-software@net.bio.net Fri Dec 01 22:00:00 1995 Path: biosci!agate!howland.reston.ans.net!gatech2!EU.net!peer-news.britain.eu.net!psinntp!psinntp!psinntp!psinntp!interramp.com!usenet From: MARTY Newsgroups: bionet.software Subject: New Histologic Software Date: Fri, 01 Dec 95 19:37:56 PDT Organization: PSI Public Usenet Link Lines: 43 Message-ID: NNTP-Posting-Host: ip62.akron.oh.interramp.com Mime-Version: 1.0 Content-Type: TEXT/PLAIN; charset=US-ASCII X-Newsreader: NEWTNews & Chameleon -- TCP/IP for MS Windows from NetManage Gold Standard Multimedia Miroscopic Anatomy Gold Standard Multimedia Inc. has announced the CD-ROM release of Microscopic Anatomy, an innovative cellular anatomy tutorial the company has developed in conjunction with the University of Florida College of Medicine. A Macintosh-based videodisc version of the software has been primary course material at the College of Medicine for more than three years and students who have used it praise it as one of the most useful tools for basic science instruction. The new CD-ROM integrates the original two-monitor videodisc program into a single interactive interface for both the Macintosh and Windows platforms. This release completes Gold Standard Multimedia's "Anatomy Suite," a three-CD series which includes the Human Anatomy and Radiologic Anatomy programs already in use at over 90% of all medical schools in the United States. Microscopic Anatomy is modeled after the classroom exercises of Dr. Thomas Hollinger, Associate Professor of Anatomy and Cell Biology at the University of Florida. It presents a logical organization of 1,200 histologic slides and electron micrographs, each with references to degrees of magnification,detailed explanatory text,descriptions of the staining procedures for the various specimens, and color arrows highlighting key structures.Zoom capabilities allow full-screen enlargement of the slides for closer observation. The program also features a five minute movie of Dr. Hollinger demonstrating the set-up and use of a microscope. Because Microscopic Anatomy is based on and intended for an educational setting, it includes extensive quizzing and review features. The interactive "practical"and written exam formats draw on a bank of more than 1,750 questions which offer immediate feedback and reinforcement. The price for the Microscopic Anatomy (MA) Individual CD-ROM is US$99, plus shipping. An Institutional CD-ROM version with additional tools for end-user modification will be available in the coming months for US$500. Contact Marty Thomas expomed @interramp.com http://www.winc.com/commerce/expomed/ From owner-software@net.bio.net Fri Dec 01 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!EU.net!Portugal.EU.net!news.rccn.net!scsing.switch.ch!news.belwue.de!News.Uni-Marburg.DE!usenet From: becker@ps1515.chemie.uni-marburg.de (Anderas Becker) Newsgroups: bionet.software Subject: Re: DNA sequence analysis Date: 1 Dec 1995 06:35:36 GMT Organization: FB Chemie/Biochemie, Universtity, Marburg, Germany Lines: 19 Message-ID: <49m7no$1re@surz03fi.HRZ.Uni-Marburg.DE> References: <49i3ir$jih@news.fhg.de> NNTP-Posting-Host: nnex03.ppp.uni-marburg.de X-Newsreader: WinVN 0.92.6+ In article <49i3ir$jih@news.fhg.de>, Dirk Seegert says: > >Hi, > >does anybody know a program similar to "MacVector" for doing DNA sequence >analysis on PC like primer analysis, analysis for restriction sites..., >and which is able to load sequences from gene banks like ENTREZ or EMBL? For simple primer analysis and restrictions sites finding take a look at my home pages. Andreas ---------------------------------------------------------------------- Andreas Becker Arbeitskreis Prof. Kadenbach, FB Chemie/Biochemie, Hans- Meerwein-Strasse, Philipps-Universitaet, 35043 Marburg, Germany Phone: privat +49 6421 47304 Labor +49 6421 28 -5721 Fax -2191 eMail: BECKER@ps1515.Chemie.Uni-Marburg.De WWW : http://www.chemie.uni-marburg.de/~becker From owner-software@net.bio.net Fri Dec 01 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!uwm.edu!math.ohio-state.edu!jussieu.fr!ens-cachan.fr!news From: GATAA Mounir Newsgroups: bionet.software,comp.cad.autocad Subject: Looking for a BDD software Date: 2 Dec 1995 19:45:41 GMT Organization: ENS Cachan (en test) Lines: 11 Message-ID: <49qad5$l6o@ciss1.ens-cachan.fr> NNTP-Posting-Host: lurpa13.ens-cachan.fr Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 1.1N (X11; I; SunOS 4.1.3 sun4c) X-URL: news:bionet.software Xref: biosci bionet.software:14057 comp.cad.autocad:18911 Hello, Is there any software available for BDD. First, I have to represent sequential machines in smaller sizes. Second, I will see if it's possible to execute sequential machines in a calculator with the BDD representation. Thank you in advance. ----------------------------- gataa@lurpa.ens-cachan.fr From owner-software@net.bio.net Fri Dec 01 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!in2.uu.net!fdn.fr!jussieu.fr!centre.univ-orleans.fr!univ-lyon1.fr!in2p3.fr!swidir.switch.ch!scsing.switch.ch!news.belwue.de!News.Uni-Marburg.DE!usenet From: becker@ps1515.chemie.uni-marburg.de (Anderas Becker) Newsgroups: bionet.software Subject: Re: NIH Image problem Date: 1 Dec 1995 14:16:45 GMT Organization: FB Chemie/Biochemie, Universtity, Marburg, Germany Lines: 30 Message-ID: <49n2od$9qu@surz03fi.HRZ.Uni-Marburg.DE> References: <49imhn$o6a@flood.weeg.uiowa.edu> NNTP-Posting-Host: nnex02.ppp.uni-marburg.de X-Newsreader: WinVN 0.92.6+ In article <49imhn$o6a@flood.weeg.uiowa.edu>, Scott Moye-Rowley says: > >Dear NIH Image users: > > I am trying to use this program to analyze levels of protein from a >scanned image of an autoradiogram. After opening the image in NIH >image, I use the rectangular selection tool to select the left most band >(the first lane). Then the mark first lane command is issued. A copy >of the image appears but only of the first lane (of a total of 6 lanes) >with the desired band selected. Did you mark the first band in the original image and the next ones in the copy using the key mark next lane? >2. If not, is this a memory problem? In that case an window would appear that tells you that your undo buffer is to small. If you have horizontal lanes you can use my autoexecutable macro. You find it on my www site. You only have to mark all lanes, start autoexecute, then you are ask how many lanes are inside the selected area. The rest will be done for you. Andreas ---------------------------------------------------------------------- Andreas Becker Arbeitskreis Prof. Kadenbach, FB Chemie/Biochemie, Hans- Meerwein-Strasse, Philipps-Universitaet, 35043 Marburg, Germany Phone: privat +49 6421 47304 Labor +49 6421 28 -5721 Fax -2191 eMail: BECKER@ps1515.Chemie.Uni-Marburg.De WWW : http://www.chemie.uni-marburg.de/~becker From owner-software@net.bio.net Fri Dec 01 22:00:00 1995 Path: biosci!bcm.tmc.edu!cs.utexas.edu!howland.reston.ans.net!gatech2!EU.net!Portugal.EU.net!news.rccn.net!scsing.switch.ch!news.belwue.de!news.uni-ulm.de!rz.uni-karlsruhe.de!news.uni-stuttgart.de!news.ruhr-uni-bochum.de!news.rwth-aachen.de!news.dfn.de!zrz.TU-Berlin.DE!cs.tu-berlin.de!uni-erlangen.de!winx03!wpxx02.toxi.uni-wuerzburg.de!not-for-mail From: krasel@wpxx02.toxi.uni-wuerzburg.de (Cornelius Krasel) Newsgroups: bionet.software Subject: Re: Hydropathy Plots Date: 30 Nov 1995 10:39:28 GMT Organization: Dept. of Pharmacology, U Wuerzburg Lines: 14 Message-ID: <49k1l0$jl3@winx03.informatik.uni-wuerzburg.de> References: <49idg7$sn@news2.ucsd.edu> NNTP-Posting-Host: wpxx02.toxi.uni-wuerzburg.de X-Newsreader: TIN [UNIX 1.3 950824BETA PL0] Fred Criscuolo (fred@network.ucsd.edu) wrote: > I am looking for public domain software or a Web-based service that > will allow us to complete hydropathy plots for an amino acid > sequence. Thanks. Very crude but working is the C source code in the original paper by Kyte & Doolittle. --Cornelius. -- /* Cornelius Krasel, U Wuerzburg, Dept. of Pharmacology, Versbacher Str. 9 */ /* D-97078 Wuerzburg, Germany email: phak004@rzbox.uni-wuerzburg.de SP3 */ /* "Science is the game we play with God to find out what His rules are." */ From owner-software@net.bio.net Fri Dec 01 22:00:00 1995 Newsgroups: bionet.software,biz.comp.software,comp.mail.list-admin.software,comp.software.international,comp.sys.next.software,alt.comp.shareware Path: biosci!agate!howland.reston.ans.net!ix.netcom.com!netcom.com!mikem From: mikem@netcom.com (Mike Murray) Subject: Re: Yellow Pages Directory Software Message-ID: Sender: mikem@netcom4.netcom.com Organization: Mike's Clock Clinic X-Newsreader: Forte Free Agent 1.0.82 References: <4905tm$cea@news.worldlinx.com> Date: Sat, 2 Dec 1995 06:11:00 GMT Lines: 26 Xref: biosci bionet.software:14054 biz.comp.software:7864 comp.mail.list-admin.software:966 comp.software.international:3070 comp.sys.next.software:20546 jcudahy@cdx.net (Jeff ) wrote: >Could anyone tell me where I could get my hands on a piece of software >that has either telephone listings or a Yellow Pages listing for the >U.S. or parts thereof? I found one that has Canada but can't find one >for the U.S. yet. Jeff, Try one of my pages ftp://webcom.com/pub/z4murray/pages/yellow.html A reply from, E-mail address mikem@netcom.com Mike Murray or z4murray@webcom.com A specialist in Atmos and 400-day clock repair. In continuous service since 04/01/1982. Mike's Clock Clinic Memberships: AWI # 17851; NAWCC # 074021 1326 Stanford Street Santa Monica, California USA 90404-2502 Fax: 310-828-7381 My Web site is located at http://www.webcom.com/~z4murray/ Main FTP site is located at ftp.netcom.com/pub/mi/mikem From owner-software@net.bio.net Fri Dec 01 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!swrinde!cs.utexas.edu!geraldo.cc.utexas.edu!netnews.uthscsa.edu!usenet From: lapointe@uthscsa.edu (David S Lapointe) Newsgroups: bionet.software Subject: Re: Windows equivalent of NIH Image Date: 2 Dec 1995 22:54:33 GMT Organization: UT Health Science Center San Antonio Lines: 85 Message-ID: <49qlf9$nvp@cosmos.uthscsa.edu> References: <49n15d$k1m@is.bbsrc.ac.uk> <49n1h2$k1m@is.bbsrc.ac.uk> <49ohhc$4nv@shellx.best.com> NNTP-Posting-Host: imagine.uthscsa.edu Mime-Version: 1.0 Content-Type: Text/Plain; charset=ISO-8859-1 X-Newsreader: WinVN 0.99.5 Andy Phillips wrote: >Sorry about the previous posting - I hit the wrong button. > >I'm looking for software to analyze digital images of Northern blots, SDS gels >etc. I realize >that NIH Image is ideal for my requirements, but unfortunately we have PCs >here, not Macs. Does >anyone know of an equivalent to Image that runs under Windows? It need not be >freeware, but I >don't want to spend thousands of pounds. > >Andy Our Dental Diagnostics Department has written an Image Analysis tool that is very versatile. %%%%%% cliped from http://ddsdx.uthscsa.edu/dig/itdesc.html UTHSCSA ImageTool (IT) is a free image processing and analysis program for Microsoft Windows 95ª or Windows NTª. IT can acquire, display, edit, analyze, process, compress, save and print gray scale and color images. IT can read and write over 22 common file formats including BMP, PCX, TIF, GIF and JPEG. Image analysis functions include dimensional (distance, angle, perimeter, area) and gray scale measurements (point, line and area histogram with statistics). ImageTool supports standard image processing functions such as contrast manipulation, sharpening, smoothing, edge detection, median filtering and spatial convolutions with user-defined convolution masks. IT also has built-in macro capabilities that allow the user to record repetitive tasks and playback saved macros to automate image analysis. ImageTool was designed with an open architecture that provides extensiblity via a variety of plug-ins. Support for image acquisition using either Adobe Photoshop plug-ins or Twain scanners is built-in. Custom analysis and processing plug-ins can be developed using the software development kit (SDK) provided (with source code). This approach makes it possible to solve almost any data acquisition or analysis problem with IT. ImageTool provides for geometric transformations such as rotate, flip vertical, flip horizontal and magnification up to four levels. All analysis and processing functions are available at any magnification factor. The program is a multiple document interface (MDI) application supporting any number of windows (images) simultaneously. Spatial calibration is available to indicate real world dimensional measurements such as millimeters, microns, feet, miles, etc. for linear and area. Density or gray scale calibration can be done relative to radiation or optical density (OD) standards. Future versions of IT will provides for image annotation with text, arrows, rectangle, ellipses and polygon. Multiple levels of undo are provided. ImageTool is in beta release 1.0, we would appreciate any bug reports and suggestions to improve IT as a tool for imaging research. Bugs will be fixed and improvement made as time permits. ImageTool was written using Borland's C++ version 4.5 and the source code for the executable is available free of charge. IT was developed in the Department of Dental Diagnostic Science at The University of Texas Health Science Center, San Antonio, Texas. The program was developed by C. Donald Wilcox, S. Brent Dove, W. Doss McDavid and David B. Greer. As the old saying goes: "You need IT, You ought to have IT, So go ahead and FTP IT ImageTool is available via anonymous FTP at ftp://maxrad6.uthscsa.edu You will need to download Part 1 and Part 2. If you have already downloaded Part 2 of either ImageTool or Image Quiz you do not need to download it again. As both programs use the same DLLs %%%%%% end clip %%%%%%% From owner-software@net.bio.net Sat Dec 02 22:00:00 1995 Path: biosci!agate!news.ucdavis.edu!dale!ez041797 From: ez041797@dale.ucdavis.edu (Jean-Manuel Henry) Newsgroups: bionet.software Subject: Determining heterologous sequences Date: 3 Dec 1995 20:39:45 GMT Organization: University of California, Davis Lines: 17 Message-ID: <49t1uh$mco@mark.ucdavis.edu> NNTP-Posting-Host: dale.ucdavis.edu X-Newsreader: TIN [version 1.2 PL2] Hi, I am trying to determine heterologous nucleotides in a set of related sequences. So far, I have been able to determine homologous nucleotides, by performing a multiple sequence alignment and shading homologouse regions,2 this isn't of much use since the remaining sequences may hav homology with one another. For example: sequence 1: A sequence 2: A sequence 3: A sequence 4: C sequence 5: C sequence 6: T Conventional shading programs would shade all sequences containing "A" (1,2, & 3). However, I would like a program which would shade "C" as well in sequences 4 & 5. That is, a program to detect all nonunique nucleotides (T in sequence 6, in the above example). If anyone knows of a program with this ability please email me. Much obliged, JMH From owner-software@net.bio.net Sat Dec 02 22:00:00 1995 Path: biosci!agate!howland.reston.ans.net!Germany.EU.net!news.dfn.de!gs.dfn.de!uni-erlangen.de!lrz-muenchen.de!wap4.zi.biologie.uni-muenchen.de!salger From: salger@wap4.zi.biologie.uni-muenchen.de (Klaus Salger) Newsgroups: bionet.software Subject: Re: Hydropathy Plots Date: 30 Nov 1995 13:02:55 GMT Organization: Leibniz-Rechenzentrum, Muenchen (Germany) Lines: 25 Distribution: world Message-ID: <49ka1v$hsh@sparcserver.lrz-muenchen.de> References: <49idg7$sn@news2.ucsd.edu> NNTP-Posting-Host: wap4.zi.biologie.uni-muenchen.de X-Newsreader: TIN [version 1.2 PL2] Fred Criscuolo (fred@network.ucsd.edu) wrote: : Hi, : I am looking for public domain software or a Web-based service that : will allow us to complete hydropathy plots for an amino acid : sequence. Thanks. : Fred : fcriscuo@ucsd.edu You could try http://genome1.bio.bnl.gov/bbq.html under "Programs for protein sequence analysis". This is, by the way, a good server for a lot of different sequence analysis stuff. Cheers Klaus -- Klaus Salger phone : +49 (0)89 5902 -502 Zoologisches Institut FAX : -450 AG MacWilliams e-mail: salger@zi.biologie.uni-muenchen.de Luisenstr. 14 80333 Muenchen Germany my favorite links are here: http://www.zi.biologie.uni-muenchen.de/~salger/salger.html From owner-software@net.bio.net Sat Dec 02 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!in2.uu.net!EU.net!Germany.EU.net!zib-berlin.de!gs.dfn.de!uni-erlangen.de!lrz-muenchen.de!z41.zi.biologie.uni-muenchen.de!strimmer From: Korbinian Strimmer Newsgroups: bionet.software Subject: PUZZLE 2.3 AVAILABLE Date: 1 Dec 1995 14:11:11 GMT Organization: LMU Munich Lines: 94 Distribution: world Message-ID: <49n2dv$d6q@sparcserver.lrz-muenchen.de> NNTP-Posting-Host: z41.zi.biologie.uni-muenchen.de Mime-Version: 1.0 Content-Type: text/plain; charset=ISO-8859-1 Content-Transfer-Encoding: 8bit X-Newsreader: Nuntius 2.0.4_PPC X-XXMessage-ID: X-XXDate: Fri, 1 Dec 1995 14:11:09 GMT ==================================== PUZZLE VERSION 2.3 NOW AVAILABLE!! ==================================== NEW IN VERSION 2.3: * more models for maximum likelihood calculation + mtREV model (Adachi-Hasegawa, for proteins encoded on mtDNA) + SH model (Schoeniger-von Haeseler, for dependent nucleotides) * base frequencies can now be freely specified * input format change to PHYLIP INTERLEAVED * usability improvements + clear error messages + remaining time estimations during run + all infos about run written down in "puzzle.out" file + report of base frequencies + nucleotide and protein analysis combined in one program * built-in consensus tree routines * more supported systems + MS-DOS + VMS * bug fixes (necessary for doing runs with a large number of taxa) * algorithmic improvements + better quartet handling (what to do if quartet topology is unclear) + better edge selection (random if two edges are equally weighted) + no more dependencies from input order * one additional Internet server (making downloading more easy) All these new features are definitely worth the upgrade from version 2.2 (especially the bug fixes :-) ! ABOUT PUZZLE: PUZZLE is an ANSI C compliant and PHYLIP compatible program that implements the quartet puzzling method for reconstructing tree topologies from character state data. Quartet puzzling is a method that applies maximum likelihood tree recon- struction to all possible quartets of taxa and subsequently tries to combine most of the four-taxa maximum likelihood trees to construct an overall tree. Usually there are several possible solutions. A consensus tree generated from the quartet puzzling trees shows nodes that are well supported. More details about the algorithm and on the phylogenetic accuracy will be published elsewhere (K. Strimmer and A. von Haeseler, 1996). PUZZLE supports all popular models of sequence evolution of nucleotides and proteins. PUZZLE is platform independent and runs sucessfully on a large variety of computers under many operation systems, including MacOS, MS-DOS, UNIX, and VMS. Precompiled executables are provided for MacOS and MS-DOS. For UNIX and VMS system specific files for automated compilation are provided. PUZZLE is distributed electronically over the Internet: - European Bioinformatics Institute (Hinxton Hall, Hinxton, Cambridge CB10 1RQ, UK) ftp://ftp.ebi.ac.uk/pub/software/mac/puzzle ftp://ftp.ebi.ac.uk/pub/software/dos/puzzle ftp://ftp.ebi.ac.uk/pub/software/unix/puzzle ftp://ftp.ebi.ac.uk/pub/software/vms/puzzle - FTP server of the work group of the authors (Zoological Institute, University of Munich, Munich, FRG) ftp://fx.zi.biologie.uni-muenchen.de/pub/puzzle From these servers PUZZLE can be retrieved by anonymous FTP. On request the PUZZLE package will also be emailed (MIME) to users who can't access these Internet servers. Users without access to the Internet should contact the authors for an alternative way of distribution. CORRESPONDENCE Korbinian Strimmer strimmer@zi.biologie.uni-muenchen.de Arndt von Haeseler arndt@zi.biologie.uni-muenchen.de Zoologisches Institut Universitaet Muenchen Luisenstrasse 14 D-80333 Muenchen Germany Voice: +49-89-5902-327 Fax: +49-89-5902-474 From owner-software@net.bio.net Sat Dec 02 22:00:00 1995 Path: biosci!agate!news.ucdavis.edu!library.ucla.edu!info.ucla.edu!newsfeed.internetmci.com!howland.reston.ans.net!EU.net!Germany.EU.net!zib-berlin.de!news.rrz.uni-hamburg.de!ephys.zmnh.uni-hamburg.de!user From: cottmann@mailhost.zmnh.uni-hamburg.de (Tobias Cottmann) Newsgroups: bionet.software Subject: Re: X window server Date: Fri, 01 Dec 1995 19:02:02 +0100 Organization: Zentrum fuer Molekulare Neurobiologie Lines: 18 Message-ID: References: NNTP-Posting-Host: ephys.zmnh.uni-hamburg.de In article , Andy.Law@bbsrc.ac.uk (Andy Law) wrote: > In article , > fitz@cbl.cees.edu (Carl Fitz) wrote: > > I'm looking for a new X Window server for the Macintosh. We currently use [...] > Version 1.2 [of MacX] works acceptably well in my experience. It doesn't run on PowerMacs though. In our Lab anyway [...] > eXodus. From White Pine Software. [...] Their email is support@wpine.com I guess there's also sales@... or whatever. Tobias From owner-software@net.bio.net Sat Dec 02 22:00:00 1995 Path: biosci!bcm.tmc.edu!cs.utexas.edu!howland.reston.ans.net!Germany.EU.net!news.dfn.de!news.coli.uni-sb.de!hades.rz.uni-sb.de!news From: su16pmtw@rz.uni-sb.de (Thomas Weiss) Newsgroups: bionet.software Subject: Re: SCIENTIFIC PAPERS DATABASE Date: Sun, 03 Dec 1995 04:06:15 GMT Organization: Institute for Biogeography Lines: 38 Message-ID: <49r7kd$lrv@hades.rz.uni-sb.de> References: <494sc6$qf9@iris02.itqb.unl.pt> <497d8g$c36@winx03.informatik.uni-wuerzburg.de> <4985b5$8mf@shellx.best.com> NNTP-Posting-Host: netslip14.rz.uni-sb.de X-Newsreader: Forte Free Agent 1.0.82 hquinn@shellx.best.com (INTERNET ROCKHOUSE) wrote: >Cornelius Krasel (krasel@wpxx02.toxi.uni-wuerzburg.de) wrote: >: Claudio Gomes (gomes@itqb.unl.pt) wrote: >: > I'm looking for a database for Scientific papers. >: However, you don't say which operating system you want to run it on. >Claudio is using the 16bit windows version of Netscape to write the request, >so I guess he wants windows 3.1 software. I would go with Tim Cutt's >'Refs' program for windows 3.1/win95, which is shareware, inexpensive and >extremely functional. Even given the choice among the more expensive ones. I have used LIMAN german) for a while and would like to try out another one. Therefor I would appreciate a LINK to this program ("REFS"). Do you know the filename that I could use with ARCHIE? Or an FTP directory? Or a WEB page? Thanks a lot, Tom. --------------------------------------------------------------- Thomas Weiss Institut fuer Biogeographie Universitaet des Saarlandes Breitenbacherstr. 14 D-66115 Saarbruecken e-mail: thwes@stud.uni-sb.de su16pmtw@rz.uni-sb.de Tel: +49-681-49307 C-Serve: 100602,3105 Fax: +49-681-49307 100602.3105@compuserve.com Biogeography at: http://www.uni-sb.de/philfak/fb6/fr66/fr66.htm Wildlife Telemetry: http://www.uni-sb.de/philfak/fb6/fr66/tpw/telem/telem.htm From owner-software@net.bio.net Sun Dec 03 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!in1.uu.net!news.u.washington.edu!root From: meir@zoology.washington.edu (Eli Meir) Newsgroups: bionet.software Subject: Re: is there a software FAQ for this group? Date: 4 Dec 1995 21:10:16 GMT Organization: Dept. of Zoology, Univ. of Washington Lines: 13 Sender: -Not-Authenticated-[3641] Message-ID: <49vo3o$elv@nntp3.u.washington.edu> References: NNTP-Posting-Host: quaternary.zoology.washington.edu X-Posted-From: InterNews 1.0.5@quaternary.zoology.washington.edu Xdisclaimer: No attempt was made to authenticate the sender's name. There is a faq on biology education software which is posted to this group (not an official group faq, but related to one facet of bionet.software). You can get it by anonymous ftp from: ftp.zoology.washington.edu /pub/doc It's also on some web sites, though I can't remember which ones just now. Eli Meir Dept of Zoology, Univ of Washington meir@zoology.washington.edu From owner-software@net.bio.net Sun Dec 03 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!vixen.cso.uiuc.edu!newsrelay.iastate.edu!news.iastate.edu!burcu From: burcu@iastate.edu (Ferhan Ozadali) Newsgroups: bionet.software Subject: Re: 3D reconstruction Date: 3 Dec 1995 23:58:52 GMT Organization: Iowa State University, Ames, Iowa USA Lines: 29 Message-ID: <49tdjs$apd@news.iastate.edu> References: NNTP-Posting-Host: ag1.iastate.edu Keywords: microscopy, sections, 3D, tumor You can contact to VayTek, Inc. for a software which is used for confocal microscopy. This program can be downloaded from University of Iowa, FREE. However, if you need to have full version with support you need to contact the company. Therin e-mail address is vaytek@ins.infonet.net. You can talk to David Fleshman at 515-472-2227, or fax to them at 515-472-8131. They send you more info and video tape which explains the details of the program. they used this program for 3-D analysis of the hearth. It seem a very good program. I do not have any connection with the company. Let me know if I may assist further. Good luck. Ferhan Ozadali burcu@iastate.edu -- |\/\/\/| | | | | ________________________________________ | (o)(o) / \ C _) / HEY MAN! \ | ,___| ---| Opinions are Ferhan's, not mine! \ | / \ By the way, I will be a Food Scientist | /____\ \ when I grow up! / / \ \__________________________________________/ ************************************************************************** * FERHAN OZADALI Home: 151-C University Village * From owner-software@net.bio.net Sun Dec 03 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!in1.uu.net!jaring.my!usenet From: cwhor@pl.jaring.my Newsgroups: bionet.software Subject: Looking for software...... Date: 4 Dec 1995 12:56:54 GMT Organization: Unconfigured Lines: 13 Message-ID: <49ur6m$rti@jaring.my> NNTP-Posting-Host: j2.glg4.jaring.my X-Newsreader: AIR News 3.X (SPRY, Inc.) Hello ! I need to find some softwares. Is there anybody can help where can I get these softwares or download them? The softwares that I 'm looking are Microfeap II Release 2.0, Integrated Structural Design System and Demostration Ver 17.0 (Research Engineers, Inc). Is there any software available for Steel Sturcture Design Program ? Please help me. Regards, Francis Hor E-Mail address : cwhor@pl.jaring.my From owner-software@net.bio.net Sun Dec 03 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!EU.net!peer-news.britain.eu.net!keele!potter.cc.keele.ac.uk!zbc02 From: zbc02@cc.keele.ac.uk (S.D. Gorman) Newsgroups: bionet.software Subject: s/w for LN2 dewars Date: 4 Dec 1995 13:45:14 GMT Lines: 7 Distribution: world Message-ID: <49uu1a$og5@gerry.cc.keele.ac.uk> NNTP-Posting-Host: potter.cc.keele.ac.uk X-Newsreader: TIN [version 1.2 PL2] I'm looking for a programme for the Mac to keep track of vials of cell lines stored in liquid nitrogen dewars. I've tried Microsoft's FileMaker Pro, but I find it too generic. Does anyone know of any Mac s/w designed for this purpose? Scott Gorman zbc02@cc.keele.ac.uk From owner-software@net.bio.net Sun Dec 03 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!in1.uu.net!svc.portal.com!news1.best.com!shellx.best.com!shellx.best.com!not-for-mail From: jquinn@shellx.best.com (BIOCHEMISTRY.COM) Newsgroups: bionet.software Subject: Re: DNA sequence analysis Date: 3 Dec 1995 17:44:51 -0800 Organization: Best Internet Communications Lines: 20 Message-ID: <49tjqj$e83@shellx.best.com> References: <49i3ir$jih@news.fhg.de> <49m7no$1re@surz03fi.HRZ.Uni-Marburg.DE> NNTP-Posting-Host: shellx.best.com X-Newsreader: TIN [version 1.2 PL2] Anderas Becker (becker@ps1515.chemie.uni-marburg.de) wrote: : In article <49i3ir$jih@news.fhg.de>, Dirk Seegert says: : > : >Hi, : > : >does anybody know a program similar to "MacVector" for doing DNA sequence : >analysis on PC like primer analysis, analysis for restriction sites..., : >and which is able to load sequences from gene banks like ENTREZ or EMBL? : For simple primer analysis and restrictions sites finding take a look at : my home pages. Also, there seems to be a nice project opening up in the form of the windows/mac/unix program called 'seqpup', I think. It's free and available by ftp from fly.iubio.indiana.edu. Can't remember if it includes a restriction mapping module or not. Also, PC-gene does a massive amount of sequence adata analysis, but the interface is a bit ropey. Also you may want to see if your Mac progs run on the Mac emulator 'executor', which is a PC program. An old version of DNA strider, a Mac program, runs fine on this emulator on a PC. From owner-software@net.bio.net Sun Dec 03 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!swrinde!cs.utexas.edu!howland.reston.ans.net!EU.net!Austria.EU.net!newsfeed.ACO.net!swidir.switch.ch!scsing.switch.ch!news.belwue.de!news.uni-konstanz.de!schink From: Andreas.Brune@uni-konstanz.de (Andreas Brune) Newsgroups: bionet.software Subject: Re: SCIENTIFIC PAPERS DATABASE Date: Mon, 04 Dec 95 08:43:47 GMT Organization: Universitaet Konstanz Lines: 17 Distribution: world Message-ID: <49ucc3$bu4@eurybia.rz.uni-konstanz.de> References: <494sc6$qf9@iris02.itqb.unl.pt> <497d8g$c36@winx03.informatik.uni-wuerzburg.de> <4985b5$8mf@shellx.best.com> <49r7kd$lrv@hades.rz.uni-sb.de> NNTP-Posting-Host: schink.biologie.uni-konstanz.de X-Newsreader: News Xpress Version 1.0 Beta #4 In article <49r7kd$lrv@hades.rz.uni-sb.de>, su16pmtw@rz.uni-sb.de (Thomas Weiss) wrote: >I have used LIMAN german) for a while and would like to try out >another one. Therefor I would appreciate a LINK to this program >("REFS"). Do you know the filename that I could use with ARCHIE? Or an >FTP directory? Or a WEB page? http://chiark.chu.cam.ac.uk:81/refs/refs.html Enjoy, Andreas Brune Dr. Andreas Brune * Mikrobielle Oekologie * Fakult. f. Biologie * Universitaet Konstanz * Postfach 5560, M654 * 78434 Konstanz * Germany * Phone: +49-7531-883282 * Fax: +49-7531-882966 ~! From owner-software@net.bio.net Sun Dec 03 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!vixen.cso.uiuc.edu!ux1.cso.uiuc.edu!a-schmi From: a-schmi@ux1.cso.uiuc.edu (schmid aloisia) Newsgroups: bionet.software Subject: gfp imaging Date: 4 Dec 1995 22:50:36 GMT Organization: University of Illinois at Urbana Lines: 14 Message-ID: <49vtvs$4sf@vixen.cso.uiuc.edu> NNTP-Posting-Host: ux1.cso.uiuc.edu X-Newsreader: TIN [version 1.2 PL2] I am currently using GFP-expressing flies and am looking at embryonic develop- ment. i am working under high power magnification on an inverted microscope and want to set up a video system where I can look at these embryos and acquire images that show the GFP with good resolution. i am finding that I am having trouble resolving the expression on video images at the single cell level. I was wondering if anyone had good advice on what kind of video system to set up for this purpose and especially what kind of imaging software to get. what are the pros and cons of the various packages you have used? Any info at all would be greatly appreciated..... alice Schmid From owner-software@net.bio.net Mon Dec 04 22:00:00 1995 Path: biosci!lhc.nlm.nih.gov!gold!epstein From: epstein@gold.nlm.nih.gov (Jonathan Epstein) Newsgroups: bionet.molbio.genbank,bionet.software Subject: Network Entrez is now more firewall-friendly Date: 5 Dec 1995 20:07:04 GMT Organization: National Library of Medicine Lines: 51 Message-ID: <4a28p8$ec5@lhc.nlm.nih.gov> NNTP-Posting-Host: 130.14.25.47 X-Newsreader: TIN [version 1.2 PL2] Xref: biosci bionet.molbio.genbank:2189 bionet.software:14077 For the uninitiated, Network Entrez is a client/server retrieval system which includes access to the public sequence databases as well as 3-D structures, a genome database, and portions of MEDLINE. Many people use 'Network Entrez' behind their institutional firewall, with mixed results to date due to incompatabilities between firewalls and the design of Network Entrez. As of Network Entrez release 4.013, which is currently on ftp://ncbi.nlm.nih.gov/entrez/network it is possible to reverse the direction of the client<->server connection in a manner which is more favorable to firewalls, namely, by causing the client to connect to the server instead of vice versa. The default behavior is still for the server to connect back to the client. To override this behavior you can either (a) select the "Outgoing connections only" checkbox on the second screen of the netentcf configuration program OR (b) manually set DIRECT_SVC_CON=TRUE in the [NET_SERV] section of the NCBI configuration file on your system. It is our intention to continue to support the UNIX SOCKS capability of Network Entrez which was added in mid-1994. We have no plans to add any SOCKS capability for non-UNIX platforms. Note, however, that on Windows platforms it is possible in principle for a SOCKS-friendly WinSock implementation to effectively provide SOCKSified Network Entrez access when used in combination with the DIRECT_SVC_CON mode described above. The next version of the NCBI toolbox ftp://ncbi.nlm.nih.gov/toolbox/ncbi_tools will contain this new functionality, and naturally we encourage you to develop client software which makes use of this functionality. You may also wish to compile Network Entrez for yourself from source code if you have an institutional firewall which requires special treatment. Please direct general Network Entrez queries to net-info@ncbi.nlm.nih.gov, and general NCBI toolbox questions to toolbox@ncbi.nlm.nih.gov. Cheers, - Jonathan Jonathan Epstein epstein@ncbi.nlm.nih.gov National Center for Biotechnology Information Phone: (301)496-2477 x254 National Library of Medicine Building 38A, Room 8N805 National Institutes of Health 8600 Rockville Pike Bethesda, MD 20894 From owner-software@net.bio.net Mon Dec 04 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!in2.uu.net!news.sprintlink.net!hermes.is.co.za!news.pix.za!usenet From: pakt0003@pixie.co.za (Connie Malan) Newsgroups: bionet.software Subject: Chinon Scanner Date: Tue, 05 Dec 1995 07:10:38 GMT Organization: PiX - Proxima information X-change Lines: 6 Message-ID: <4a1ah4$mfr@hawk.pix.za> NNTP-Posting-Host: net-34.pix.za X-Newsreader: Forte Free Agent 1.0.82 I have a Chinon DS 3000 scanner. My software is not working (disks are damaged). Can anyone help my with a copy or where I can get a copy. The software is called COLORSET and runs in Windows Thanks From owner-software@net.bio.net Mon Dec 04 22:00:00 1995 Newsgroups: bionet.software,sci.bio.ecology Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!elroy.jpl.nasa.gov!lll-winken.llnl.gov!uwm.edu!vixen.cso.uiuc.edu!uchinews!neph-pc14.bsd.uchicago.edu!owagener From: owagener@medicine.bsd.uchicago.edu Subject: Re: graphics software help! X-Nntp-Posting-Host: neph-pc14.bsd.uchicago.edu Message-ID: Lines: 33 Sender: news@midway.uchicago.edu (News Administrator) Organization: The University of Chicago X-Newsreader: Trumpet for Windows [Version 1.0 Rev Final Beta #10] References: <4a0dfr$qv5$1@mhadg.production.compuserve.com> Date: Tue, 5 Dec 1995 18:37:10 GMT Xref: biosci bionet.software:14074 sci.bio.ecology:15094 In article <4a0dfr$qv5$1@mhadg.production.compuserve.com> Louise Lapierre <74267.2135@CompuServe.COM> writes: >From: Louise Lapierre <74267.2135@CompuServe.COM> >Subject: graphics software help! >Date: 5 Dec 1995 03:15:07 GMT >Could you please help me find an adequate software package for >making scientific graphs. I need something that will make >publication quality multiple graphs with numerous species density >classes on an axes of distance in a river. I would also need a >graphing tool to make box plots on an distance scale on a river, >as well as error bars on linear graph. The program would also >require some drawing possibilities to be able to make >inscriptions of towns and effluent from industries. >If you know of any software that can do this without to much >tampering, please reply. >I have used Freelance, Harvard Graphic and Sigma plot, all for >DOS. Do the windows versions work better? >-- >Louise Lapierre, E-Mail : 74267.2135@compuserve.com > >move slowly, move mountains Hi Louise: Windows programs are much easier to use than DOS, especially when you need to play around with axis or figures. I have found that Stanford Graphics 3.0 let you customize scientific and technical graphs easily, and also let you present yor graph on the way that Freelance or Harvard Graphic does using master slide templates, a nice feature if you are planing presentatios or printing slides. This days I think you can get the program for $99. One downside is that broken axes are clumsy, so if you use a lot of broken axes better stay off this program. SigmaPlot for windows is also very powerful and easy to customize, but is much more expensive. Osvaldo Wagener From owner-software@net.bio.net Mon Dec 04 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!howland.reston.ans.net!nntp.coast.net!torn!blaze.trentu.ca!knet2.flemingc.on.ca!news From: ariley@knet.flemingc.on.ca (Al Riley) Newsgroups: bionet.software,biz.comp.software,comp.mail.list-admin.software,comp.software.international,comp.sys.next.software,alt.comp.shareware Subject: Re: Yellow Pages Directory Software Date: Mon, 04 Dec 1995 23:36:38 GMT Organization: KawarthaNET Lines: 14 Message-ID: <4a00h3$bbf@knet2.flemingc.on.ca> References: <4905tm$cea@news.worldlinx.com> NNTP-Posting-Host: 142.237.42.130 X-Newsreader: Forte Free Agent 1.0.82 Xref: biosci bionet.software:14071 biz.comp.software:7883 comp.mail.list-admin.software:967 comp.software.international:3082 comp.sys.next.software:20571 >In article <4905tm$cea@news.worldlinx.com>, jcudahy@cdx.net (Jeff ) wrote: >> Could anyone tell me where I could get my hands on a piece of software >> that has either telephone listings or a Yellow Pages listing for the >> U.S. or parts thereof? I found one that has Canada but can't find one >> for the U.S. yet. Jeff, could you post the URL for the Yellow Pages Listings you found for Canada? Thanks, Al From owner-software@net.bio.net Mon Dec 04 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!in1.uu.net!news.u.washington.edu!ressler.hslib.washington.edu!user From: stuy@u.washington.edu (Stuart Yarfitz) Newsgroups: bionet.software Subject: Re: DNA sequence analysis Date: Tue, 05 Dec 1995 11:06:10 -0800 Organization: University of Washington Lines: 23 Message-ID: References: <49i3ir$jih@news.fhg.de> NNTP-Posting-Host: ressler.hslib.washington.edu In article <49i3ir$jih@news.fhg.de>, Dirk Seegert wrote: > Hi, > > does anybody know a program similar to "MacVector" for doing DNA sequence > analysis on PC like primer analysis, analysis for restriction sites..., > and which is able to load sequences from gene banks like ENTREZ or EMBL? > > Thank you > > Leo Check http://www.hslib.washington.edu/hsl/bioinfo/software.html for links to information about sequence analysis programs. An additional Mac/Win package is Vector NT1 from InforMax <76620.2735@compuserve.com>. Good luck. Stu -- Stuart Yarfitz stuy@u.washington.edu Biological Information Services Health Sciences Libraries and Information Center University of Washington From owner-software@net.bio.net Mon Dec 04 22:00:00 1995 Path: biosci!agate!howland.reston.ans.net!swrinde!newsfeed.internetmci.com!news.compuserve.com!news.production.compuserve.com!news From: Louise Lapierre <74267.2135@CompuServe.COM> Newsgroups: bionet.software,sci.bio.ecology Subject: graphics software help! Date: 5 Dec 1995 03:15:07 GMT Organization: CompuServe, Inc. (1-800-689-0736) Lines: 17 Message-ID: <4a0dfr$qv5$1@mhadg.production.compuserve.com> Xref: biosci bionet.software:14072 sci.bio.ecology:15080 Could you please help me find an adequate software package for making scientific graphs. I need something that will make publication quality multiple graphs with numerous species density classes on an axes of distance in a river. I would also need a graphing tool to make box plots on an distance scale on a river, as well as error bars on linear graph. The program would also require some drawing possibilities to be able to make inscriptions of towns and effluent from industries. If you know of any software that can do this without to much tampering, please reply. I have used Freelance, Harvard Graphic and Sigma plot, all for DOS. Do the windows versions work better? -- Louise Lapierre, E-Mail : 74267.2135@compuserve.com move slowly, move mountains From owner-software@net.bio.net Tue Dec 05 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!in2.uu.net!dziuxsolim.rutgers.edu!waller-asy-45.rutgers.edu!user From: elinton@rci.rutgers.edu (Eric W. Linton) Newsgroups: bionet.software,bionet.plants,bionet.plants.education Subject: Greenhouse cataloging software? Date: 6 Dec 1995 01:36:31 GMT Organization: Rutgers University Lines: 20 Message-ID: NNTP-Posting-Host: waller-asy-45.rutgers.edu X-poster: elinton@rci-dialup Xref: biosci bionet.software:14081 bionet.plants:9488 bionet.plants.education:251 Does anyone know of a free, share or commercial software for cataloging the contents of a greenhouse in order to make it accessible for people at a University (Professors and Grad students) to find out what and where things are located and some basic information about the plant in question? The ability to include photos and hyperlinkes would be great. Please send all replies to my email elinton@rci.rutgers.edu TIA -- Eric Linton Rutgers, The State University of New Jersey Cell and Developmental Biology e-mail: elinton@rci.rutgers.edu snail mail: Rutgers/Nelson Labs C-109 P O Box 1059 Piscataway, NJ 08855-1059 From owner-software@net.bio.net Tue Dec 05 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!elroy.jpl.nasa.gov!swrinde!newsfeed.internetmci.com!in2.uu.net!branch.com!usenet From: Howard Cash Newsgroups: bionet.software Subject: Re: Sequencher help Date: 6 Dec 1995 00:49:01 GMT Organization: Gene Codes Corp., makers of SEQUENCHER software for sequencing DNA Lines: 48 Message-ID: <4a2p9t$eds@hawk.branch.com> References: NNTP-Posting-Host: 198.111.253.134 Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 1.1N (Macintosh; I; 68K) To: oravaxcm@world.std.com X-URL: news:DItG1C.IM9@world.std.com oravaxcm@world.std.com (Charles A Miller) wrote: >Does anyone know of a shareware program that can read sequencher files or >at least convert the sequence portion of the file into text that can be >read into DNAstrider or GeneJockey? > >Thanks >Chuck > >oravaxcm@world.std.com Dear Chuck, You don't need another program. Just select the sequence or sequences that you want to export from your Sequencher project and use the Export Sequences command under the FILE menu (import/export). When you see the Mac's "File Save" dialogue, you'll notice a "Format" button at the bottom of the window. Click it and you'll be able to choose between sixteen or seventeen file formats including ASCII (that's probably what you want), GenBank, GCG, IG, SCF (if you are using files that have chratogram data) and - now that I think of it - even Strider. It's worth mentioning that the code for many of the file exporting routines in Sequencher come from the excellent software library of Don Gilbert. To make things easier on yourself, you can set Sequencher's User Prefs to attach a particular application signature to files that are exported as plain text. For instance, you can export text files with Microsoft Word's signature. That way, when you double click on the exported document it will launch Word instead of Sequencher. I don't read this group as often as I would like, so if you have further questions, you can e-mail me directly or send a message to support@genecodes.com. Regards, Howard Cash President ----------------------------------------- Gene Codes Corporation 2901 Hubbard Rd. Ann Arbor, MI 48105 phone: 313-769-7249 fax: 313-769-7074 e-mail: howardc@genecodes.com ----------------------------------------- From owner-software@net.bio.net Tue Dec 05 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!elroy.jpl.nasa.gov!swrinde!newsfeed.internetmci.com!chi-news.cic.net!news.math.psu.edu!news.cac.psu.edu!newsserver.jvnc.net!synapse.bms.com!NewsWatcher!user From: watson_j@bms.com (A. John Watson) Newsgroups: bionet.software Subject: Re: Sequencher help Date: Tue, 05 Dec 1995 17:51:49 -0300 Organization: Bristol-Myers Squibb Lines: 22 Message-ID: References: NNTP-Posting-Host: 140.176.107.223 In article , oravaxcm@world.std.com (Charles A Miller) wrote: > Does anyone know of a shareware program that can read sequencher files or > at least convert the sequence portion of the file into text that can be > read into DNAstrider or GeneJockey? You can direct that Sequencher sequence files be saved as ASCII text (as well as several other formats). Now, if you mean a shareware that can read ABI 373 output and convert it to text, then that's a diiferent story! ;^) AJW ---------------- John Watson Bristol-Myers Squibb Co. watson_j@bms.com --------------------------------------------------------------------- "If you're not part of the solution, you're part of the precipitate." --------------------------------------------------------------------- From owner-software@net.bio.net Tue Dec 05 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!in1.uu.net!EU.net!Portugal.EU.net!news.rccn.net!scsing.switch.ch!swsbe6.switch.ch!swidir.switch.ch!in2p3.fr!univ-lyon1.fr!jussieu.fr!univ-lille1.fr!cresimm-pc1.univ-lille1.fr!vergoten From: vergoten@pop.univ-lille1.fr (Gerard Vergoten) Newsgroups: bionet.software Subject: NATO-ASI on Biomolecular structure and dynamics"NATO Advanced Study Institute" Date: Wed, 6 Dec 1995 17:45:40 Organization: CRESIMM - C8 - USTL - Villeneuve d'Ascq Lines: 15 Distribution: world Message-ID: NNTP-Posting-Host: cresimm-pc1.univ-lille1.fr Keywords: molecular modeling, computer simulations X-Newsreader: Trumpet for Windows [Version 1.0 Rev A] "BIOMOLECULAR STRUCTURE AND DYNAMICS: RECENT EXPERIMENTAL AND THEORETICAL ADVANCES" ASI LOUTRAKI, Greece May 27-June 6,1996 Contact: Professor G. VERGOTEN Address: Université des Sciences et Technologies de Lille CRESIMM ( U 279 INSERM ) UFR de Chimie Bât C8 - 1er étage 59655 VILLENEUVE D'ASCQ FRANCE FAX : (33) 20 33 72 79 E mail : vergoten@pop.univ-lille1.fr Designated Publisher: KLUWER From owner-software@net.bio.net Tue Dec 05 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!chi-news.cic.net!news.math.psu.edu!ra.nrl.navy.mil!usenet From: rwadkins@cbmse.nrl.navy.mil (rmw) Newsgroups: bionet.software Subject: Re: CCD cameras? Date: 6 Dec 1995 15:07:52 GMT Organization: His Own Little World Lines: 13 Sender: -Not-Authenticated-[3942] Message-ID: <4a4bk8$j70@ra.nrl.navy.mil> References: <30C4917F.6E4F@mackiller.llnl.gov> NNTP-Posting-Host: rmw-6900.nrl.navy.mil X-Posted-From: InterNews 1.0.1@rmw-6900.nrl.navy.mil Xdisclaimer: No attempt was made to authenticate the sender's name. In article <30C4917F.6E4F@mackiller.llnl.gov> Chris Barry writes: > does anyone know a newsgroup that deals with CCD cameras? Thanks in > advance. > > Chris Barry > chbarry@mackiller.llnl.gov Occasionally on comp.sys.mac.scitech and sci.image.processing, if you're doing any kind of scientific work. --Randy From owner-software@net.bio.net Tue Dec 05 22:00:00 1995 Path: biosci!FREENET.LORAIN.OBERLIN.EDU!aa1184 From: aa1184@FREENET.LORAIN.OBERLIN.EDU (David J. Gerrick) Newsgroups: bionet.software Subject: True-Basic Information Needed Date: 6 Dec 1995 07:07:35 -0800 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 16 Sender: daemon@net.bio.net Distribution: world Message-ID: <199512061507.AA01197@freenet.lorain.oberlin.edu> Reply-To: aa1184@freenet.lorain.oberlin.edu NNTP-Posting-Host: net.bio.net Do any of you out in cyber space have Any experience with True Basic? I am writing some simple simulation programs for a pharmacology course and need something which can (1) Import graphics files of scanned images (2) Does not eat tons of memory - I want to distribute it to students on 3.5 inch disks. (3) Would my students be required to have a copy of True Basic or does it produce stand alone files for playback? What is the approximate cost? Any dealers who are pleasant to deal with? Any direction would be appreciated. Thank you kindly, David Gerrick From owner-software@net.bio.net Tue Dec 05 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!chi-news.cic.net!nntp.coast.net!zombie.ncsc.mil!cs.umd.edu!haven.umd.edu!news.ums.edu!umabnet.ab.umd.edu!umabnet.ab.umd.edu!mremingt From: "Mary P. Remington" Newsgroups: bionet.software Subject: Best printer for Sequencher Software Date: Wed, 6 Dec 1995 06:00:18 -0500 Organization: University of Maryland at Baltimore Lines: 4 Message-ID: NNTP-Posting-Host: umabnet.ab.umd.edu Mime-Version: 1.0 Content-Type: TEXT/PLAIN; charset=US-ASCII Any recommendations for a color printer for the Sequencher Software output. We want to output chromatogram material as well as text. Thanks, Mary From owner-software@net.bio.net Tue Dec 05 22:00:00 1995 Path: biosci!daresbury!is.bbsrc.ac.uk!news From: Andy Phillips Newsgroups: bionet.software Subject: Re: CCD cameras? Date: 6 Dec 1995 10:33:31 GMT Organization: IACR-Long Ashton Lines: 20 Message-ID: <4a3rhr$7sn@is.bbsrc.ac.uk> References: <30C4917F.6E4F@mackiller.llnl.gov> NNTP-Posting-Host: pc0553.lars.bbsrc.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 1.22 (Windows; I; 16bit) Chris Barry wrote: >does anyone know a newsgroup that deals with CCD cameras? Thanks in >advance. > >Chris Barry >chbarry@mackiller.llnl.gov Try rec.photo.digital. Andy ----------------------------------------------------------------------------- Email : andy.phillips@bbsrc.ac.uk : University of Bristol Home : andy@cycad.demon.co.uk : IACR Long Ashton Research Station Phone : +44-275-392181 ext:257 : Long Ashton Fax : +44-275-394281 : Bristol, BS18 9AF, UK ----------------------------------------------------------------------------- From owner-software@net.bio.net Tue Dec 05 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!news.sesqui.net!uuneo.neosoft.com!news.blkbox.COM!usenet From: mfknight@blkbox.com (Mark Leite-Ferraz) Newsgroups: bionet.software Subject: TeleComm Software Co. Date: Wed, 06 Dec 1995 07:02:53 GMT Organization: The Black Box, Houston, Tx (713) 480-2686 Lines: 182 Message-ID: <4a3f04$b6@news.blkbox.com> NNTP-Posting-Host: port137.blkbox.com X-Newsreader: Forte Free Agent 1.0.82 TeleComm International Software Co. I would just like to take this opportunity to introduce my company. TIC is a international software marketing firm. Our interest lies in bringing our software to those who do not have the resources to access it form their location. We provide software of any type in many languages and we only deal in high quality wares. We are not as interested in notoriety as much as we are interested in supplying our customers and our distributors with the highest quality software and service found in the business. We are confident that our services will be profitable for you. We only deliver top notch service form friendly people. Weather your a software developer, a distributor, or a software store owner TeleComm will always be there to fill your needs. We will enjoy doing business with you and your associates. To Whom it May Concern, I would like to thank you for taking an interest in my company and what we have to offer. Currently we are pushing only one title, but we believe that is a winner from all sides. It is FaxMail for Windows©. 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Should you have any further questions regarding our compamy or it’s services please feel free to call, fax, or eMail us. Once again thank you for your time. MFknight@blkbox.com From owner-software@net.bio.net Tue Dec 05 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!in1.uu.net!news00.sunet.se!sunic!nntp.coast.net!lll-winken.llnl.gov!usenet From: Chris Barry Newsgroups: bionet.software Subject: CCD cameras? Date: Tue, 05 Dec 1995 18:37:51 +0000 Organization: Lawrence Livermore Nat'l Lab Lines: 5 Message-ID: <30C4917F.6E4F@mackiller.llnl.gov> NNTP-Posting-Host: m164.llnl.gov Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 2.0b3 (Macintosh; I; 68K) does anyone know a newsgroup that deals with CCD cameras? Thanks in advance. Chris Barry chbarry@mackiller.llnl.gov From owner-software@net.bio.net Tue Dec 05 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!vixen.cso.uiuc.edu!sdd.hp.com!col.hp.com!csn!magnus.acs.ohio-state.edu!cis.ohio-state.edu!nntp.sei.cmu.edu!bb3.andrew.cmu.edu!andrew.cmu.edu!hw2m+ From: Herbert Wolfson Newsgroups: bionet.software Subject: Construction software Date: Tue, 5 Dec 1995 12:04:57 -0500 Organization: Carnegie Mellon, Pittsburgh, PA Lines: 2 Message-ID: NNTP-Posting-Host: po8.andrew.cmu.edu Does anyone know of a good and easy to work with construction accounting software program for a small construction company? Thanks. From owner-software@net.bio.net Tue Dec 05 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!howland.reston.ans.net!Germany.EU.net!news.dfn.de!gina.zfn.uni-bremen.de!marvin.pc-labor.uni-bremen.de!news.uni-stuttgart.de!news.belwue.de!news.uni-freiburg.de!bio6.chemie.uni-freiburg.de!meyer From: meyer@bio6.chemie.uni-freiburg.de (Joachim Meyer) Newsgroups: bionet.software,bionet.molec-model,comp.os.linux.misc,bionet.xtallography Subject: Re: Compiling Molscript using g77 under Linux Date: 6 Dec 1995 16:03:57 GMT Organization: Uni Freiburg, Germany Lines: 38 Message-ID: <4a4etd$o0b@n.ruf.uni-freiburg.de> References: <49mdst$2pv@cisun2000.unil.ch> NNTP-Posting-Host: bio6.chemie.uni-freiburg.de Xref: biosci bionet.software:14092 bionet.molec-model:708 comp.os.linux.misc:82481 bionet.xtallography:2220 In article <49mdst$2pv@cisun2000.unil.ch>, Victor Jongeneel writes: |> |> Greetings! |> |> I am trying to compile Per Kraulis' Molscript program to run under Linux. |> I have compiled and installed the latest version (0.5.17) of g77, the GNU |> FORTRAN compiler. All seems well, except for the system-specific calls |> contained in forlib/system.f and forlib/system.inc I don't have a clue |> as to the the parameters to pass to a Linux system. |> |> Anyone tried this before? Anyone got Molscript running in a Linux box? |> Code from the abovementioned files available on request. |> |> Help with this will earn my eternal gratitude, plus a voucher for |> all-you-can-eat pizza on your next visit to Lausanne! |> |> Victor J. Hi Victor, "all-you-can-eat pizza" is really a persuasive argument. Molscript and Raster3D are running on my Linux box; I have used the f2c/gcc combination and observed similar problems with system.f (versions for different OSs tried ...). Finally I commented out all unused routines in system.f and modified the .c file (exit_ replaced by exit), if I recall the details correctly. Hope this helps, Joachim. ***************************************************************** * Joachim Meyer meyer@bio5.chemie.uni-freiburg.de * * FAX: +49/761/5987 * * Abt. Prof. G.E.Schulz * * Institut f"ur Organische Chemie und Biochemie * * Albertstr. 21, D-79104 Freiburg i.Br., Germany * ***************************************************************** From owner-software@net.bio.net Tue Dec 05 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!howland.reston.ans.net!tank.news.pipex.net!pipex!dish.news.pipex.net!pipex!handbag.tecc.co.uk!usenet From: a.cannon@bbcnc.org.uk (Andrew Cannon) Newsgroups: bionet.software Subject: Re: CCD cameras? Date: 6 Dec 1995 18:13:17 GMT Organization: The BBC Networking Club Lines: 6 Message-ID: <4a4mft$g7u@auntie.bbcnc.org.uk> References: <30C4917F.6E4F@mackiller.llnl.gov> NNTP-Posting-Host: aj054.du.pipex.com X-Newsreader: WinVN 0.92.6+ CCD cameras? Might be worth enquiring on sci.engr.television.broadcast for contacts. ................................................. "Information up, fuzzy up" - Bart Kosko From owner-software@net.bio.net Wed Dec 06 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!howland.reston.ans.net!nntp.coast.net!harbinger.cc.monash.edu.au!bunyip.cc.uq.oz.au!citecuf.citec.qld.gov.au!news From: Jennifer Marohasy Newsgroups: bionet.software,bionet.plants,bionet.plants.education Subject: Re: Greenhouse cataloging software? Date: 7 Dec 1995 03:05:45 GMT Organization: CITEC Lines: 16 Message-ID: <4a5lm9$53v@citecuf.citec.qld.gov.au> References: NNTP-Posting-Host: marohasyjj.lands.qld.gov.au Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 1.1N (Windows; I; 16bit) Xref: biosci bionet.software:14094 bionet.plants:9494 bionet.plants.education:252 elinton@rci.rutgers.edu (Eric W. Linton) wrote: >Does anyone know of a free, share or commercial software for cataloging >the contents of a greenhouse in order to make it accessible for people at >a University (Professors and Grad students) to find out what and where >things are located and some basic information about the plant in question? >The ability to include photos and hyperlinkes would be great. > >Please send all replies to my email elinton@rci.rutgers.edu > I run a number of glasshouses at research station, so I too would be pleased to know if such software was available! My name is Paul Kristiansen. I'm using my supervisor's computer and email address for a while. From owner-software@net.bio.net Wed Dec 06 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!in1.uu.net!EU.net!peer-news.britain.eu.net!demon!mail2news.demon.co.uk!genesys.demon.co.uk From: Duncan Clark Newsgroups: bionet.software Subject: Re: True-Basic Information Needed Date: Thu, 07 Dec 1995 10:51:27 +0100 Organization: GeneSys Ltd. Lines: 36 Message-ID: <848961317wnr@genesys.demon.co.uk> References: <199512061507.AA01197@freenet.lorain.oberlin.edu> Reply-To: Duncan@genesys.demon.co.uk X-NNTP-Posting-Host: genesys.demon.co.uk X-Newsreader: Newswin Alpha 0.9 X-SMTP-Posting-Host: genesys.demon.co.uk [Thu, 7 Dec 95 11:08:36 GMT] X-SMTP-Posting-Host: post.demon.co.uk [Thu, 7 Dec 95 11:10:40 GMT] In article: <199512061507.AA01197@freenet.lorain.oberlin.edu> aa1184@FREENET.LORAIN.OBERLIN.EDU (David J. Gerrick) writes: > > > > Do any of you out in cyber space have Any experience with > True Basic? I am writing some simple simulation programs for > a pharmacology course and need something which can (1) Import > graphics files of scanned images (2) Does not eat tons of > memory - I want to distribute it to students on 3.5 inch disks. > (3) Would my students be required to have a copy of True Basic > or does it produce stand alone files for playback? What is the > approximate cost? Any dealers who are pleasant to deal with? About 5 years ago I wrote quite a lot in True Basic. I translated a mainframe Basic program for identifying new restriction enzyme recognition sequences from mapped sites onto a PC. It is easy to compile it as a stand alone application. Works on a 8086 to Pentium. It was the only Basic I could find that would allow string lengths of >50,000 'cos I needed to import the whole lambda sequence in one go. I still use the program regularly as restriction enzymes are my business it may be Basic but it is more than fast enough on a 66Mhz 486. As to whether you can import scanned images I do not know. The current version I think is 3.0 and sells for around 60 UK pounds. For image import you may be better to look at Visual Basic for running under Windows. There are umpteen add ons and I'm sure someone has one for images. Regards Duncan -- ----------------------------------------------------------------------------- My mind's made up. Don't confuse me with the facts! From owner-software@net.bio.net Wed Dec 06 22:00:00 1995 Newsgroups: bionet.software Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!portal.gmu.edu!hearst.acc.Virginia.EDU!murdoch!avery.med.Virginia.EDU!wrp From: wrp@avery.med.Virginia.EDU (Bill Pearson) Subject: Re: X window server X-Nntp-Posting-Host: avery.med.virginia.edu Message-ID: Sender: usenet@murdoch.acc.Virginia.EDU Organization: University of Virginia References: Date: Thu, 7 Dec 1995 15:25:01 GMT Lines: 27 In article , Tobias Cottmann wrote: >In article , >Andy.Law@bbsrc.ac.uk (Andy Law) wrote: >> In article , >> fitz@cbl.cees.edu (Carl Fitz) wrote: >> > I'm looking for a new X Window server for the Macintosh. We currently use >[...] >> Version 1.2 [of MacX] works acceptably well in my experience. > >It doesn't run on PowerMacs though. In our Lab anyway MacX1.5 works fine on PCI Power Macs. MacX1.2 runs fine on non-PCI Power Macs (in emulation mode). I learned recently that there is a very simple patch to MacX1.2 (requires ResEdit) that corrects a configuration bug that will allow MacX1.2 to run on a PCI PowerMac. (I will try to find the reference to this fix.) I have been very happy with MacX1.2, and now MacX1.5, on my PowerMac. Bill Pearson -- wrp@virginia.EDU Dept. of Biochemistry #440 U. of Virginia Charlottesville, VA 22908 From owner-software@net.bio.net Wed Dec 06 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!in2.uu.net!EU.net!Germany.EU.net!zib-berlin.de!uniol!olis.north.de!indrom!unihil!newsserver.rrzn.uni-hannover.de!tubsibr!ws74.iff.ing.tu-bs.de!ROE From: ROE@abraham.iff.ing.tu-bs.de Newsgroups: bionet.software Subject: What the hell is ISICAD or EASYCAD Date: Tue, 5 Dec 1995 13:50:31 GMT Organization: Institut fuer Flugfuehrung an der TU Braunschweig Lines: 7 Distribution: world Message-ID: NNTP-Posting-Host: ws74.iff.ing.tu-bs.de X-Newsreader: Trumpet for Windows [Version 1.0 Rev B] Hi I have to use a program which requires another program called ISICAD (or EASYCAD - I don´t know). This program uses or creates files with the extension ..exf Can anybody tell me what kind of program this is and whether it is a public domain one or not?! Thanks From owner-software@net.bio.net Wed Dec 06 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!howland.reston.ans.net!math.ohio-state.edu!jussieu.fr!univ-lyon1.fr!in2p3.fr!swidir.switch.ch!cisun2000.unil.ch!news From: vjongene@eliot.unil.ch (Victor Jongeneel) Newsgroups: bionet.software,comp.os.linux.misc,bionetxtallography,bionet.molec-model Subject: Compiling Molscript under Linux Date: 7 Dec 1995 14:07:37 GMT Organization: Ludwig Institute Lines: 138 Message-ID: <4a6sf9$41m@cisun2000.unil.ch> Reply-To: Victor.Jongeneel@isrec.unil.ch NNTP-Posting-Host: pcisrec-c302.unil.ch Mime-Version: 1.0 Content-Type: Text/Plain; charset=US-ASCII X-Newsreader: WinVN 0.99.7 Xref: biosci bionet.software:14099 comp.os.linux.misc:82673 bionet.molec-model:711 First of all, a big thank you to all of you who replied to my previous post on this subject (I now have too many responses to answer individually). As I have been asked by several people to summarize the problem and the answers to it, here it goes: 1) The problem. Molscript uses an all-purpose library of FORTRAN routines that has to be compiled before the main program. A system-specific source file, system.f, defines some of these. All of the versions contain a few things that Linux and/or g77 don't support: (i) the EQUIVALENCE statement is not recognized by g77, but does work with f2c; (ii) system.f calls two procedures that are missing in the Linux libraries, etime (elapsed time) and rand (random number generator). Problem (i) shows up at compile time, problem (ii) when linking the forlib.a library. It seems that in some versions of Linux (not 1.2.13, which I use), the exit procedure also has some problems, which could be potentially more serious (no clean program abort on erroneous input). 2) The solutions. The simplest solution, which I actually managed to figure out for myself, is to use f2c to convert system.f, and to comment out the SYTIME and SYRAND subroutines from the source code (they are not used by Molscript anyway). They can also be, more elegantly, turned into dummy subroutines that generate fixed values. The most elegant answer I received was from Joe Smith at Penn, who provided my with a shar file to patch the source code. Here it is: --------------------------------------------------------------------------- There are a couple of functions used in Per's utility library (not molscript itself - except exit()), which are missing from the f2c libraries. Unshar the stuff at the end of this message in the molscript 'forlib' directory, run 'patch . # Source directory was `/home/jes/pkg/molscript'. # # Existing files will *not* be overwritten unless `-c' is specified. # # This shar contains: # length mode name # ------ ---------- ------------------------------------------ # 242 -rw-r--r-- aux.c # 152 -rw-r--r-- makefile.sun.diff # touch -am 1231235999 $$.touch >/dev/null 2>&1 if test ! -f 1231235999 && test -f $$.touch; then shar_touch=touch else shar_touch=: echo echo 'WARNING: not restoring timestamps. Consider getting and' echo "installing GNU \`touch', distributed in GNU File Utilities..." echo fi rm -f 1231235999 $$.touch # # ============= aux.c ============== if test -f 'aux.c' && test X"$1" != X"-c"; then echo 'x - skipping aux.c (file already exists)' else shar: Saving aux.c (text) echo 'x - extracting aux.c (text)' sed 's/^X//' << 'SHAR_EOF' > 'aux.c' && #ifdef _linux_ #include #include X int exit_(int status) { X exit(status); X return 0; } X float ran_(int seed) { X return (double)rand()/RAND_MAX; } X float etime_(float (*times)[2]) { X return 1.0; } X #endif /* _linux_ */ SHAR_EOF $shar_touch -am 1018094895 'aux.c' && chmod 0644 'aux.c' || echo 'restore of aux.c failed' shar_count="`wc -c < 'aux.c'`" test 242 -eq "$shar_count" || echo "aux.c: original size 242, current size $shar_count" fi # ============= makefile.sun.diff ============== if test -f 'makefile.sun.diff' && test X"$1" != X"-c"; then echo 'x - skipping makefile.sun.diff (file already exists)' else shar: Saving makefile.sun.diff (text) echo 'x - extracting makefile.sun.diff (text)' sed 's/^X//' << 'SHAR_EOF' > 'makefile.sun.diff' && 33,34c33,34 < forlib.a : $(OBJ) aux.o < ar ru forlib.a $(OBJ) aux.o; ranlib forlib.a --- > forlib.a : $(OBJ) > ar ru forlib.a $(OBJ); ranlib forlib.a SHAR_EOF $shar_touch -am 1018094995 'makefile.sun.diff' && chmod 0644 'makefile.sun.diff' || echo 'restore of makefile.sun.diff failed' shar_count="`wc -c < 'makefile.sun.diff'`" test 152 -eq "$shar_count" || echo "makefile.sun.diff: original size 152, current size $shar_count" fi exit 0 ------------------------------------------------------------------------------- Hope this will be of use to future compilers of Molscript and supporters of Linux! Cheers, Victor J. From owner-software@net.bio.net Wed Dec 06 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!elroy.jpl.nasa.gov!swrinde!howland.reston.ans.net!vixen.cso.uiuc.edu!usenet.ucs.indiana.edu!sunflower.bio.indiana.edu!gilbertd From: gilbertd@sunflower.bio.indiana.edu (Don Gilbert) Newsgroups: bionet.software,bionet.drosophila Subject: IUBio Archive & FlyBase server - planned outages Date: 7 Dec 1995 21:38:46 GMT Organization: Biology, Indiana University - Bloomington Lines: 44 Message-ID: <4a7mt6$871@usenet.ucs.indiana.edu> NNTP-Posting-Host: sunflower.bio.indiana.edu Xref: biosci bionet.software:14109 bionet.drosophila:1690 IUBio Archive, the biology data and software server at iubio.bio.indiana.edu, will be temporarily off the Internet, due to relocation and due to planned power outages. This outage also includes the FlyBase services at flybase.bio.indiana.edu. There will be no changes in Internet address, we are simply moving the computer and turning off power in the building these dates. Below I list alternate servers you can use during these times. They provide file access by FTP and for the FlyBase data also WWW and Gopher search services. Outages at IUBio/Flybase: Friday 8 December, some of time between 9am to 12 noon (moving) Saturday 9 December, 8am to 12 noon (outage) Monday 18 December, 7pm to 1am (outage) Friday 29 December, 6am to 7am (outage) Wednesday 3 January, 7pm to 1am (outage) Thursday 4 January, 7pm to 1am (possible outage) (Times given are EST, or GMT - 5hr.) FTP file mirrors: ftp://ftp.gdbnet.ad.jp/ftpsync/ftp.bio.indiana.edu/ -- full mirror of iubio ftp://ftp.ddbj.nig.ac.jp/pub/mirror/IUBIO/molbio -- /molbio section " /IUBIO/flybase -- /flybase data section ftp://ftp.funet.fi/pub/sci/molbio/iubiomolbio -- mirrors the /molbio section ftp://ftp.sunet.se/pub/molbio -- mirrors the /molbio section ftp://bioinformatics.weizmann.ac.il/pub/software/ -- mirrors /molbio/search, /molbio/unix, /molbio/ibmpc, /molbio/mac and /molbio/vax FlyBase Drosophila data server: http://www.embl-ebi.ac.uk:7081/ -- mirror of IU Flybase WWW services gopher://www.embl-ebi.ac.uk:7071/ -- mirror of IU Flybase Gopher services Thank you for your patience with this, Don -- -- d.gilbert--biocomputing--indiana u--bloomington--gilbertd@bio.indiana.edu From owner-software@net.bio.net Wed Dec 06 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!elroy.jpl.nasa.gov!swrinde!howland.reston.ans.net!usc!news.cerf.net!news From: dcharles@chemscope.com Newsgroups: bionet.software Subject: New Web Site:chemscope.com-Daily Biotechnology/Device News, FDA Approvals, Suppliers, Jobs, Web Pages Date: 7 Dec 1995 20:02:19 GMT Organization: CERFnet Lines: 20 Message-ID: <4a7h8b$5gj@news.cerf.net> NNTP-Posting-Host: default5.palto.cerfnet.com Visit chemscope.com, a daily web magazine dedicated to the biotechnology, medical device, and pharmaceutical industry. View: - Daily Industry News, Optional Daily Email/FAX Delivery - FDA Approvals, Warning Letters - Browse/Search Worldwide Suppliers Database (biologicals, lab instrumentation, medical materials) - Post or Read Device Equipment for Sale - Post or Read New Products - Post or Read Resumes (Public or Confidential) - Post or Read Company Job Listings - Personal/Company Web Pages @ $25/month - remote update using FTP, password protected - immediate forward responses to your Email or FAX machine - ChemScope hyperlinks - optional password restricted web access to pages David E. Charles 415.568.1266 dcharles@chemscope.com From owner-software@net.bio.net Wed Dec 06 22:00:00 1995 Path: biosci!agate!spool.mu.edu!howland.reston.ans.net!news.cac.psu.edu!news.math.psu.edu!hudson.lm.com!godot.cc.duq.edu!news.duke.edu!usenet From: Namjin Chung Newsgroups: bionet.software Subject: (no subject) Date: 7 Dec 1995 18:48:47 GMT Organization: Duke univeristy Lines: 13 Message-ID: <4a7cuf$7sn@news.duke.edu> NNTP-Posting-Host: phanes92.mc.duke.edu Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 1.1N (Macintosh; I; 68K) X-URL: news:bionet.software Dear Netters, Please recommend me the following categories of software for macintoshes. * sequence analysis *DNA and progein gel analysis Thanks in advance, Namjin Chung Duke University Medical Center e-mail: chung006@mc.duke.edu From owner-software@net.bio.net Wed Dec 06 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!elroy.jpl.nasa.gov!swrinde!howland.reston.ans.net!news.sprintlink.net!news.azstarnet.com!usr6ip27.azstarnet.com!faesong From: faesong@azstarnet.com Newsgroups: bionet.software Subject: Shareware for room design? Date: Thu, 7 Dec 1995 11:05:06 LOCAL Organization: Arizona Daily Star - AZSTARNET Lines: 5 Distribution: world Message-ID: NNTP-Posting-Host: usr6ip27.azstarnet.com X-Newsreader: Trumpet for Windows [Version 1.0 Rev B final beta #4] Does anyone know of any shareware software that can design rooms. More specifically, theater sets. You can E-mail me. From owner-software@net.bio.net Wed Dec 06 22:00:00 1995 Path: biosci!cmb.bcm.tmc.edu!solovyev From: solovyev@cmb.bcm.tmc.edu (Victor V. Solovyev) Newsgroups: bionet.software Subject: New Yeast and Updated Gene_Finder Programs Date: 7 Dec 1995 10:44:21 -0800 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 71 Sender: daemon@net.bio.net Distribution: world Message-ID: <199512071842.MAA01443@dove.cellb.bcm.tmc.edu> NNTP-Posting-Host: net.bio.net New and updated programs in BCM Gene-Finder service: ========================================================================== NEW: FEXY and YSPL Recognition of Yeast coding regions ========================================================================== These 2 new programs were developed for analysis of Yeast sequences: the programs are similar with Gene-finder programs for analysis of Human or Mammalian, Drosophila, Plant and Nematode sequences. You can receive instructions about sequence format from WWW page ================================================================================= The other Gene-Finder programs were updated to predict single exon genes as well as exon-intron structure of multiexon genes. ---------------------------------------------------------------------------------- FEXY - prediction of yeast 5'-, internal and 3'- potential exons YSPL - prediction of splice sites in yeast sequences Analysis of uncharacterized sequences and help files are available through WWW: http://dot.imgen.bcm.tmc.edu:9331/gene-finder/gf.html and by EMAIL server of Weizmann Institute of Science Examples: mail -s fexy services@bioinformatics.weizmann.ac.il < test.seq where test.seq a file with the sequence. (Soon analysis will be available from University of Houston also: mail -s fexy service@bchs.uh.edu < test.seq). Questions:solovyev@cmb.bcm.tmc.edu =============================================================== The other services are =============================================================== FGENEH - search for Mammalian gene structure with exons assembling by dynamic programming FEXH - search for 5'-, internal and 3'-exons HEXON - search for internal exons HSPL - search for splice sites RNASPL - prediction exon-exon junctions in cDNA sequences CDSB - prediction of Bacterial coding regions HBR - recognition of human and bacterial sequences to test a library for E. coli contamination by sequencing example clones TSSG - recognition of human promoter regions (Ghosh/Prestridge motif data) TSSW - recognition of human promoter regions (Weingender motif data base) POLYAH - recognition of of 3'-end cleavage and polyadenilation region of human mRNA precursors FGENED - search for Drosophila gene structure with exons assembling by dynamic programming FEXD - search for Drosophila 5'-, internal and 3'-exons DSPL - search for Drosophila splice sites FGENEN - search for Nematode gene structure with exons assembling by dynamic programming FEXN - search for Nematode 5'-, internal and 3'-exons NSPL - search for Nematode splice sites FGENEA - search for Plant gene structure with exons assembling by dynamic programming FEXA - search for Plant 5'-, internal and 3'-exons ASPL - search for Plant splice sites FEXA - search for Yeast 5'-, internal and 3'-exons ASPL - search for Yeast splice sites SSP - prediction of a-helix and b-strand in globular proteins by segment-oriented approach. NSSP - prediction of a-helix and b-strand segments in globular proteins by nearest-neighbor algorithm. From owner-software@net.bio.net Wed Dec 06 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!mr.net!news.mr.net!carleton.edu!mctah.acns.carleton.edu!user From: sfox@carleton.edu (Sean Fox) Newsgroups: bionet.software Subject: Re: X window server Date: 6 Dec 1995 22:38:57 GMT Organization: Carleton College Lines: 19 Message-ID: References: NNTP-Posting-Host: mctah.acns.carleton.edu In article , cottmann@mailhost.zmnh.uni-hamburg.de (Tobias Cottmann) wrote: > In article , > Andy.Law@bbsrc.ac.uk (Andy Law) wrote: > > In article , > > fitz@cbl.cees.edu (Carl Fitz) wrote: > > > I'm looking for a new X Window server for the Macintosh. We currently use > [...] > > Version 1.2 [of MacX] works acceptably well in my experience. > > It doesn't run on PowerMacs though. In our Lab anyway > Version 1.5 of MacX works just fine on my 8100/80. Though it's not particularly snappy..... Sean Fox sfox@carleton.edu From owner-software@net.bio.net Wed Dec 06 22:00:00 1995 Newsgroups: bionet.software Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!portal.gmu.edu!hearst.acc.Virginia.EDU!murdoch!avery.med.Virginia.EDU!wrp From: wrp@avery.med.Virginia.EDU (Bill Pearson) Subject: Re: X window server X-Nntp-Posting-Host: avery.med.virginia.edu Message-ID: Sender: usenet@murdoch.acc.Virginia.EDU Organization: University of Virginia References: Date: Thu, 7 Dec 1995 15:35:42 GMT Lines: 32 Here is a possible patch for MacX1.2 that may fix its problems with PCI Power-Mac's. > 1. A patch for MacX 1.2 which solves the problem I had on a 7500 under > 7.5.2. I've applied the patch. Brilliant, problem solved. > > >"ross (w.r.) brown" said: > > >Apple has acknowledged to us that MacX 1.2 does not work on the 7200 and > >7500 (and possibly the other PCI models). The reason, we discovered > >through our own testing, is that the new ROMs implement a new trap ($A09F) > >which just happens to have the same index in the OS trap table that > >_UnimplTrap has in the Toolbox trap table. This activates a dormant bug > >in MacX 1.2's initialization logic, causing it to think that the _PMgrOp > >trap is implemented when it actually isn't. MacX thinks it's running on a > >PowerBook, calls the bad trap, and crashes. > > > >To fix the bug, here's an easy patch you can do with ResEdit: In MacX > >1.2's 'CODE'(4) resource, offset $21F0, change "MOVEQ #00,D0" ($7000) to > >"MOVEQ #01,D0" ($7001). > > > >Having got past that problem, I find that MacX 1.2 works well on a > 7500. I have not tried it. Bill Pearson -- wrp@virginia.EDU Dept. of Biochemistry #440 U. of Virginia Charlottesville, VA 22908 From owner-software@net.bio.net Wed Dec 06 22:00:00 1995 Newsgroups: bionet.software Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!vixen.cso.uiuc.edu!newsrelay.iastate.edu!gw1.phibred.com!news From: Scott Nichols Subject: Seeking software to predict carbohydrate polymer rheological properties Content-Type: text/plain; charset=us-ascii Message-ID: Sender: news@phibred.com (USENET News System) Content-Transfer-Encoding: 7bit Organization: Pioneer Hi-Bred International Mime-Version: 1.0 Date: Thu, 7 Dec 1995 15:39:58 GMT X-Mailer: Mozilla 1.1 (Windows; U; 16bit) Lines: 9 I am looking for software that takes polymer structural information as input and predicts solution behavior of the molecule. I would appreciate hearing about any commercial packages or programs you have developed yourself. Thanks in advance. Scott Nichols From owner-software@net.bio.net Wed Dec 06 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!howland.reston.ans.net!newsjunkie.ans.net!merlion.singnet.com.sg!lantana.singnet.com.sg!usenet From: emily@singnet.com.sg (emily) Newsgroups: bionet.software Subject: VIDEO-CD COPY SOFTWARE Date: Thu, 07 Dec 1995 12:20:57 GMT Organization: Singapore Telecom Internet Service Lines: 2 Message-ID: <4a6mas$9r2@lantana.singnet.com.sg> NNTP-Posting-Host: ts900-1625.singnet.com.sg X-Newsreader: Forte Free Agent 1.0.82 Anyone know of the suitable softwares to copy VIDEO-CD to CD-R. From owner-software@net.bio.net Wed Dec 06 22:00:00 1995 Path: biosci!daresbury!nntp-trd.UNINETT.no!newsfeed.sunet.se!news00.sunet.se!sunic!news99.sunet.se!news.lth.se!merkurius.lu.se!lc630.plantbio.lu.se!Lars.S From: Lars Newsgroups: bionet.software Subject: aa-composition from mass number program wanted Date: 7 Dec 1995 14:00:05 GMT Organization: Lund University Lines: 4 Distribution: world Message-ID: <4a6s15$m7e@merkurius.lu.se> NNTP-Posting-Host: lc630.plantbio.lu.se Mime-Version: 1.0 Content-Type: text/plain; charset=ISO-8859-1 Content-Transfer-Encoding: 8bit X-Newsreader: Nuntius 2.0.4_68K X-XXMessage-ID: X-XXDate: Thu, 7 Dec 1995 13:05:48 GMT I am looking fo a program to calculate the amino acid composition from mass numbers aquired by mass spectroscopy. Preferably something that is available trough ftp. Reply to ingela.johansson@plantbio.lu.se From owner-software@net.bio.net Wed Dec 06 22:00:00 1995 Path: biosci!agate!howland.reston.ans.net!newsfeed.internetmci.com!news.mathworks.com!zombie.ncsc.mil!nntp.coast.net!frankensun.altair.com!wlbr!news.cerf.net!newsserver.sdsc.edu!beast.sdsc.edu!u27554 From: u27554@beast.sdsc.edu (Elya S Kurktchi) Newsgroups: bionet.software,bionet.molec-model,comp.os.linux.misc,bionet.xtallography Subject: Re: Compiling Molscript using g77 under Linux Date: 7 Dec 1995 13:05:16 GMT Organization: San Diego Supercomputer Center Lines: 29 Message-ID: <4a6oqc$2lo@rosebud.sdsc.edu> References: <49mdst$2pv@cisun2000.unil.ch> NNTP-Posting-Host: beast.sdsc.edu Xref: biosci bionet.software:14097 bionet.molec-model:710 comp.os.linux.misc:82671 bionet.xtallography:2223 In article <49mdst$2pv@cisun2000.unil.ch>, Victor Jongeneel wrote: > >Greetings! > >I am trying to compile Per Kraulis' Molscript program to run under Linux. >I have compiled and installed the latest version (0.5.17) of g77, the GNU >FORTRAN compiler. All seems well, except for the system-specific calls >contained in forlib/system.f and forlib/system.inc I don't have a clue >as to the the parameters to pass to a Linux system. > >Anyone tried this before? Anyone got Molscript running in a Linux box? >Code from the abovementioned files available on request. I have it up and running on a FreeBSD UNIX box by using the latest version of g77. After talk with Kraulis, there are some routines that you can comment out which will compile molscript on a generic unix machine. You can email me on what lines I modified on my system.f to get it working. But for those of you who run FreeBSD, I'll support that platform (for a while...) if you need to get molscript compiled there. I may have a "generic" system.f since it also seemed to work on HP-UX 9.01 with g77. Elya. ---- u27554@sdsc.edu VRADD LAB / San Diego Supercomputer Center @ UCSD Virtual Reality Aided Drug Design -- (Home of BCL-2 and Pseudomonas Exotoxin) From owner-software@net.bio.net Wed Dec 06 22:00:00 1995 Newsgroups: bionet.software Path: biosci!bloom-beacon.mit.edu!cambridge-news.cygnus.com!news3.near.net!sol.caps.maine.edu!jax!news From: Carolyn Blake Subject: MENDEL? Content-Type: text/plain; charset=us-ascii Message-ID: <30C7166A.41C67EA6@jax.org> Sender: news@jax.org Nntp-Posting-Host: emanon Content-Transfer-Encoding: 7bit Organization: The Jackson Laboratory Mime-Version: 1.0 Date: Thu, 07 Dec 1995 11:29:30 -0500 X-Mailer: Mozilla 2.0b2 (X11; I; SunOS 4.1.3_U1 sun4m) Lines: 12 is anyone aware of a linkage analysis program called 'mendel' and where i might be able to obtain it? thanks for any & all info! cb -- ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Carolyn Blake csb@jax.org The Jackson Laboratory 600 Main Street I used to think I was indecisive, Bar Harbor, ME 04609 but now I'm not so sure. ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ From owner-software@net.bio.net Thu Dec 07 22:00:00 1995 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!news.larc.nasa.gov!lerc.nasa.gov!magnus.acs.ohio-state.edu!math.ohio-state.edu!howland.reston.ans.net!vixen.cso.uiuc.edu!uwm.edu!homer.alpha.net!solaris.cc.vt.edu!news.mathworks.com!zombie.ncsc.mil!news.missouri.edu!news From: "Robbin L. G. Long" Newsgroups: bionet.software,sci.bio.ecology Subject: Re: graphics software help! Date: 8 Dec 1995 01:05:06 GMT Organization: University of Missouri Lines: 10 Message-ID: <4a8302$c75@news.missouri.edu> References: <4a0dfr$qv5$1@mhadg.production.compuserve.com> NNTP-Posting-Host: bchem41.biochem.missouri.edu Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 1.22 (Windows; I; 16bit) To: 74267.2135@CompuServe.COM Xref: biosci bionet.software:14112 sci.bio.ecology:15149 I just posted a response to phayter@ix.netcom.com recommending Axum Technical Graphics and Data Analysis by Trimetrix Inc. See his posting for details, but I have been using it for over five years and four revisions and have been perfectly happy with it. Good Luck, Robbin From owner-software@net.bio.net Thu Dec 07 22:00:00 1995 Path: biosci!agate!howland.reston.ans.net!nntp.coast.net!harbinger.cc.monash.edu.au!news.cs.su.oz.au!metro!news From: "Dr. Vinay Kumar" Newsgroups: bionet.software,bionet.molec-model,comp.os.linux.misc,bionet.xtallography Subject: Re: Compiling Molscript using g77 under Linux Date: 8 Dec 1995 01:11:48 GMT Organization: The University of Sydney Lines: 19 Distribution: inet Message-ID: <4a83ck$68h@metro.ucc.su.OZ.AU> References: <49mdst$2pv@cisun2000.unil.ch> <4a4etd$o0b@n.ruf.uni-freiburg.de> NNTP-Posting-Host: xray13.biochem.usyd.edu.au Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 1.1N (Windows; I; 32bit) Xref: biosci bionet.software:14113 bionet.molec-model:713 comp.os.linux.misc:82773 bionet.xtallography:2226 Your problem could be with the call for RAN (random number generators) and exit functions in program system.f. I wrote these subroutines and MOLSCRIPT could be ported on LINUX box usinf f77(f2c) compiler (1994). --------------------------------------------------------------- --- Dr. Vinay Kumar Phone : +61-2-3513907 Dept. of Inorganic Chemistry Fax : +61-2-3514726 School of Chemistry email: KUMAR_V@SUMMER.CHEM.SU.OZ.AU The University of Sydney N.S.W. 2006 Australia From owner-software@net.bio.net Thu Dec 07 22:00:00 1995 Path: biosci!biosci!not-for-mail From: "David J. States" Newsgroups: bionet.molbio.genome-program,bionet.software,bionet.biophysics,bionet.general,comp.ai,sci.bio.technology,sci.engr.biomed,wu.general Subject: Call for Papers - Intelligent Systems for Molecular Biology '96 Conference Date: 7 Dec 1995 21:57:18 -0800 Organization: Institute for Biomedical Computing Lines: 96 Sender: daemon@net.bio.net Distribution: world Message-ID: <30C77FF6.2DB7@ibc.wustl.edu> NNTP-Posting-Host: net.bio.net Xref: biosci bionet.molbio.genome-program:1626 bionet.software:14119 bionet.biophysics:1506 bionet.general:18809 comp.ai:20361 sci.bio.technology:4318 sci.engr.biomed:5053 The Fourth International Conference on Computational Biology Intelligent Systems for Molecular Biology '96 June 12-15, 1996 Washington University, St. Louis, Missouri, USA http://ibc.wustl.edu/ismb96 Call For Papers An electronic mailing list can be joined by sending a message to ismb96@ibc.wustl.edu with the word "subscribe" as the body of the message. Key Dates Meeting: June 12-15, 1996 Paper Submissions Papers due: Feb 1, 1996 Replies to authors: Mar 15, 1996 Revised papers due: Apr 1, 1996 Open Poster Submissions Abstracts due: Apr 1, 1996 Tutorial Proposals Full proposals due: March 18, 1996 Replies to authors: April 1, 1996 Draft handouts due: April 15, 1996 Final handouts due: May 13, 1996 Tutorials presented: June 12, 1996 The purpose of the ISMB conference is to disseminate the latest developments in computational molecular biology and biophysics and to stimulate new work on the application of intelligent computational systems to problems in molecular biology. ISMB is a multidisciplinary conference bringing together scientists from computer science, mathematics, statistics, and molecular biology. Its scope extends to any computational method or system supporting a biological task that is algorithmically, cognitively, or conceptually challenging, involves a synthesis of heterogeneous information, or exhibits the emergent properties of an "intelligent system." From a computational perspective, areas of interest include adaptive systems, intelligent experimental control, data modeling, machine learning, artificial intelligence, combinatorics, stochastic optimization, string and graph algorithms, linguistic methods, and parallel computer technologies. Biological areas of interest include molecular structure, genomics, molecular sequence analysis, evolution and phylogenetics, adaptive experimental systems, and molecular biology. Emphasis is placed on the validation of methods using real data sets and on practical application in the biological sciences. The ISMB conference has attracted a large and enthusiastic audience comprising scientists involved in application areas such as artificial intelligence, structural biology, DNA, RNA and protein sequence analysis and structure prediction, genome mapping, gene identification, molecular biology data and knowledge bases, and the modeling of biochemical processes. We are continuing the tradition of soliciting original papers, which will be rigorously refereed and published (by AAAI Press and the MIT Press) in proceedings available at the conference. The conference proceedings are indexed in the Medline database. The previous ISMB meetings were 1993: National Library of Medicine, USA 1994: Stanford University, USA 1995: Cambridge University, UK The four-day conference will feature introductory and advanced tutorials on June 12th and presentations of original refereed papers, posters, and invited talks (June 13-15). There will be special sessions at the conference on "Whole Genomes: Challenges and Implications," and on the "Interconnection of Molecular Biology Databases (MIMBD)." A test suite of raw data will be set aside to evaluate base-calling and gene-finding programs. A job fair and a vendor fair are also being organized. Organizing committee David States (states@ibc.wustl.edu) Terry Gaasterland (gaasterl@mcs.anl.gov) Randall Smith (rsmith@imgen.bcm.tmc.edu) Keynote Speakers Robert Waterston, Washington Univ., St. Louis David Haussler, Univ. of California, Santa Cruz Russell Doolittle, Univ. of California, San Diego Chris Sander, EMBL, Heidelberg Contact address ISMB '96 Institute for Biomedical Computing Washington University School of Medicine 700 South Euclid Avenue St. Louis, MO 63110-1012 USA Phone: (314) 362-2134 FAX: (314) 362-0234 From owner-software@net.bio.net Thu Dec 07 22:00:00 1995 Path: biosci!rutgers!csn!carbon!night.primate.wisc.edu!newsspool.doit.wisc.edu!chi-news.cic.net!usc!cs.utexas.edu!howland.reston.ans.net!nntp.coast.net!harbinger.cc.monash.edu.au!news.cs.su.oz.au!metro!news From: "Dr. Vinay Kumar" Newsgroups: bionet.software,bionet.molec-model,comp.os.linux.misc,bionet.xtallography Subject: Re: Compiling Molscript using g77 under Linux Date: 8 Dec 1995 01:05:41 GMT Organization: The University of Sydney Lines: 24 Distribution: inet Message-ID: <4a8316$15i@metro.ucc.su.OZ.AU> References: <49mdst$2pv@cisun2000.unil.ch> <4a4etd$o0b@n.ruf.uni-freiburg.de> NNTP-Posting-Host: xray13.biochem.usyd.edu.au Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 1.1N (Windows; I; 32bit) To: bionet.xtalloography Xref: biosci bionet.software:14114 bionet.molec-model:714 comp.os.linux.misc:82780 bionet.xtallography:2227 Your problem could be with the functions RAN (random number generator) and exit, if I remember correctly. I wrote this subroutines and MOLSCRIPT could be ported to Linux box using f77(f2c) compiler (1994). -- --------------------------------------------------------------- --- Dr. Vinay Kumar Phone : +61-2-3513907 Dept. of Inorganic Chemistry Fax : +61-2-3514726 School of Chemistry email: KUMAR_V@SUMMER.CHEM.SU.OZ.AU The University of Sydney N.S.W. 2006 Australia From owner-software@net.bio.net Thu Dec 07 22:00:00 1995 Path: biosci!rutgers!uwm.edu!homer.alpha.net!solaris.cc.vt.edu!news.mathworks.com!newsxfer.itd.umich.edu!news.emich.edu!news From: Paula Sanch Newsgroups: bionet.software,sci.bio.ecology Subject: Re: graphics software help! Date: 7 Dec 1995 19:07:43 GMT Organization: Eastern Michigan University Lines: 34 Message-ID: <4a7e1v$d5b@orphan.emich.edu> References: <4a0dfr$qv5$1@mhadg.production.compuserve.com> NNTP-Posting-Host: active.acad.emich.edu Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 1.22 (Windows; I; 16bit) Xref: biosci bionet.software:14117 sci.bio.ecology:15152 owagener@medicine.bsd.uchicago.edu wrote: >In article <4a0dfr$qv5$1@mhadg.production.compuserve.com> Louise Lapierre <74267.2135@CompuServe.COM> writes: >>Could you please help me find an adequate software package for >>making scientific graphs. I need something that will make >>publication quality multiple graphs with numerous species density >>classes on an axes of distance in a river. I would also need a >>graphing tool to make box plots on an distance scale on a river, >>as well as error bars on linear graph. The program would also >>require some drawing possibilities to be able to make >>inscriptions of towns and effluent from industries. >>If you know of any software that can do this without to much >>tampering, please reply. >>I have used Freelance, Harvard Graphic and Sigma plot, all for >>DOS. Do the windows versions work better? > >Hi Louise: Windows programs are much easier to use than DOS, especially when >you need to play around with axis or figures. I have found that Stanford >Graphics 3.0 let you customize scientific and technical graphs easily, and >also let you present yor graph on the way that Freelance or Harvard Graphic >does using master slide templates, a nice feature if you are planing >presentatios or printing slides. This days I think you can get the program for >$99. One downside is that broken axes are clumsy, so if you use a lot of >broken axes better stay off this program. SigmaPlot for windows is also very >powerful and easy to customize, but is much more expensive. As Osvaldo says, the Windows programs are *much* easier. I use Harvard Graphics for Windows 3.0 (and I go back to version 2 of the DOS. However, since you don't own it, I think I'd recommend Harvard Graph (a new program which is specifically oriented to graphs, and is cheaper. It will seem somewhat familiar to you, since it comes from the same software house, and I'm sure it will import any/all old files you may have from HG/DOS. However, Freelance has been upgraded recently and is getting some very good reviews in the computer rags. HG/DOS. From owner-software@net.bio.net Thu Dec 07 22:00:00 1995 Path: biosci!nymc.edu!stewart From: stewart@nymc.edu (JULIAN STEWART) Newsgroups: bionet.software Subject: microspheres Date: 7 Dec 1995 21:38:37 -0800 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 12 Sender: daemon@net.bio.net Distribution: world Message-ID: NNTP-Posting-Host: net.bio.net Sorry to any who have seen this before. Our server was down for 1 hour (translation 2 days) and I receive bionet as mail lists. Quick question: Is there some user friendly programs to calculate results for radioactive microspheres. Freeware, shareware particularly favored. Thanks in advance. Julian From owner-software@net.bio.net Thu Dec 07 22:00:00 1995 Path: biosci!rutgers!csn!carbon!night.primate.wisc.edu!sdd.hp.com!swrinde!howland.reston.ans.net!nntp.coast.net!harbinger.cc.monash.edu.au!news.cs.su.oz.au!metro!news From: "Dr. Vinay Kumar" Newsgroups: bionet.software,bionet.molec-model,comp.os.linux.misc,bionet.xtallography Subject: Re: Compiling Molscript using g77 under Linux Date: 8 Dec 1995 01:06:46 GMT Organization: The University of Sydney Lines: 24 Distribution: inet Message-ID: <4a8336$5n6@metro.ucc.su.OZ.AU> References: <49mdst$2pv@cisun2000.unil.ch> <4a4etd$o0b@n.ruf.uni-freiburg.de> NNTP-Posting-Host: xray13.biochem.usyd.edu.au Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 1.1N (Windows; I; 32bit) To: bionet.xtallography Xref: biosci bionet.software:14115 bionet.molec-model:715 comp.os.linux.misc:82781 bionet.xtallography:2228 Your problem could be with the functions RAN (random number generator) and exit, if I remember correctly. I wrote this subroutines and MOLSCRIPT could be ported to Linux box using f77(f2c) compiler (1994). -- --------------------------------------------------------------- --- Dr. Vinay Kumar Phone : +61-2-3513907 Dept. of Inorganic Chemistry Fax : +61-2-3514726 School of Chemistry email: KUMAR_V@SUMMER.CHEM.SU.OZ.AU The University of Sydney N.S.W. 2006 Australia From owner-software@net.bio.net Thu Dec 07 22:00:00 1995 Newsgroups: bionet.software Path: biosci!daresbury!nntp-trd.UNINETT.no!Norway.EU.net!EU.net!newsfeed.internetmci.com!info.ucla.edu!unixg.ubc.ca!nntp.cs.ubc.ca!news.UVic.CA!news From: jcurry@sol.uvic.ca (John Curry) Subject: Looking for Windows Restriction Digest Mapping Program Message-ID: <1995Dec7.204908.5244@sol.UVic.CA> Sender: news@sol.UVic.CA Nntp-Posting-Host: helix.ceh.uvic.ca Organization: Centre for Environmental Health X-Newsreader: WinVN 0.99.2 Mime-Version: 1.0 Date: Thu, 7 Dec 95 20:49:08 GMT Lines: 9 I am trying to find a good windows program to make maps from restriction fragment sizes determined on gels. jcurry@uvic.ca Thanks for your help. John Curry From owner-software@net.bio.net Thu Dec 07 22:00:00 1995 Path: biosci!daresbury!nntp-trd.UNINETT.no!newsfeed.sunet.se!news00.sunet.se!sunic!news99.sunet.se!news.funet.fi!news.csc.fi!usenet From: "Heikki LehvŠslaiho" Newsgroups: bionet.software Subject: Re: MENDEL? Date: 8 Dec 1995 06:40:09 GMT Organization: CSC - Center for Scientific Computing Lines: 31 Message-ID: <4a8mk9$f3l@ankka.csc.fi> References: <30C7166A.41C67EA6@jax.org> NNTP-Posting-Host: siru.csc.fi Mime-Version: 1.0 Content-Type: text/plain; charset=iso-8859-1 Content-Transfer-Encoding: 8bit X-Mailer: Mozilla 1.12(Macintosh; I; PPC) X-URL: news:30C7166A.41C67EA6@jax.org This is what is said in the linkage software list at Columbia University . Try mailing the author: MENDEL full name: descriptions: gene mapping, genetic counseling, segregation analysis, paternity testing Authors: Kenneth Lange (Univ of Michigan, klange@umich.edu), Daniel Weeks, M. Boehnke web: ftp: source code language: FORTRAN operating systems: executables: reference: Lange, Weeks, Boehnke, Genet Epide, 5, 471--471 (1988) -Heikki ______ _/ _/____________________________________________________ _/ _/ _/ _/ _/ Heikki Lehväslaiho _/_/_/_/_/ Center for Scientific Computing _/ _/ _/ Tietotie 6, P.O. Box 405, FIN-02101 Espoo FINLAND _/ _/ _/ Phone: +358 0 457 2076 FAX: +358 0 457 2302 _/ The Finnish EMBnet node __ _/_/_/_/_/________________________________________________________ From owner-software@net.bio.net Thu Dec 07 22:00:00 1995 Path: biosci!biosci!not-for-mail From: biohelp@net.bio.net (BIOSCI Administrator) Newsgroups: bionet.molbio.methds-reagnts,bionet.general,bionet.genome.arabidopsis,bionet.software,bionet.molbio.proteins,bionet.neuroscience Subject: IMPORTANT! - net.bio.net down for backups Sunday Date: 8 Dec 1995 11:42:06 -0800 Organization: BIOSCI International Newsgroups for Biology Lines: 13 Distribution: world Message-ID: <4aa4ee$9kt@net.bio.net> NNTP-Posting-Host: net.bio.net Xref: biosci bionet.molbio.methds-reagnts:37372 bionet.general:18817 bionet.genome.arabidopsis:4023 bionet.software:14124 bionet.molbio.proteins:6452 bionet.neuroscience:11601 NOTE!! The U.S. BIOSCI node at net.bio.net will be down this Sunday from 10 AM Pacific Time to about 6 PM for backups. Mail sent to the newsgroups and USENET articles should remain queued during this time, but access to WWW, gopher and WAIS services will be unavailable. Sincerely, Dave Kristofferson BIOSCI/bionet Manager biosci-help@net.bio.net From owner-software@net.bio.net Thu Dec 07 22:00:00 1995 Path: biosci!CS.Arizona.EDU!news.Arizona.EDU!noao!news.eas.asu.edu!cs.utexas.edu!howland.reston.ans.net!news.sprintlink.net!jupiter.planet.net!earth.planet.net!edpaolo From: edpaolo@earth.planet.net (E. Paolo) Newsgroups: bionet.software,biz.comp.software,comp.mail.list-admin.software,comp.software.international,comp.sys.next.software,alt.comp.shareware Subject: Re: Yellow Pages Directory Software Followup-To: bionet.software,biz.comp.software,comp.mail.list-admin.software,comp.software.international,comp.sys.next.software,alt.comp.shareware Date: 8 Dec 1995 13:16:32 GMT Organization: Planet Access Networks - Stanhope, NJ Lines: 18 Message-ID: <4a9drg$5bd@jupiter.planet.net> References: <4905tm$cea@news.worldlinx.com> <4a00h3$bbf@knet2.flemingc.on.ca> NNTP-Posting-Host: earth.planet.net X-Newsreader: TIN [version 1.2 PL2] Xref: biosci bionet.software:14123 biz.comp.software:7928 comp.mail.list-admin.software:974 comp.software.international:3123 comp.sys.next.software:20636 Al Riley (ariley@knet.flemingc.on.ca) wrote: : >In article <4905tm$cea@news.worldlinx.com>, jcudahy@cdx.net (Jeff ) wrote: : >> Could anyone tell me where I could get my hands on a piece of software : >> that has either telephone listings or a Yellow Pages listing for the : >> U.S. or parts thereof? I found one that has Canada but can't find one : >> for the U.S. yet. I use Central Service Yellow Page for looking up company phone numbers on line. They are at http://www.telephonebook.com/yp-name.html. I beleive they also have links to other country phone books. Has any else found on-line phone books ? I like the on-line one becuase they are more up to date then cd phone books. EdDatafix edpaolo@earth.planet.net From owner-software@net.bio.net Thu Dec 07 22:00:00 1995 Path: biosci!CS.Arizona.EDU!news.Arizona.EDU!noao!news.eas.asu.edu!cs.utexas.edu!howland.reston.ans.net!newsfeed.internetmci.com!in2.uu.net!news.sprintlink.net!jupiter.planet.net!earth.planet.net!edpaolo From: edpaolo@earth.planet.net (E. Paolo) Newsgroups: bionet.software,biz.comp.software,comp.mail.list-admin.software,comp.software.international,comp.sys.next.software,alt.comp.shareware Subject: Re: Yellow Pages Directory Software Followup-To: bionet.software,biz.comp.software,comp.mail.list-admin.software,comp.software.international,comp.sys.next.software,alt.comp.shareware Date: 8 Dec 1995 13:11:01 GMT Organization: Planet Access Networks - Stanhope, NJ Lines: 15 Message-ID: <4a9dh5$5bd@jupiter.planet.net> References: <4905tm$cea@news.worldlinx.com> <4a00h3$bbf@knet2.flemingc.on.ca> NNTP-Posting-Host: earth.planet.net X-Newsreader: TIN [version 1.2 PL2] Xref: biosci bionet.software:14122 biz.comp.software:7927 comp.mail.list-admin.software:973 comp.software.international:3122 comp.sys.next.software:20635 Al Riley (ariley@knet.flemingc.on.ca) wrote: : >In article <4905tm$cea@news.worldlinx.com>, jcudahy@cdx.net (Jeff ) wrote: : >> Could anyone tell me where I could get my hands on a piece of software : >> that has either telephone listings or a Yellow Pages listing for the : >> U.S. or parts thereof? I found one that has Canada but can't find one : >> for the U.S. yet. : Jeff, could you post the URL for the Yellow Pages Listings you found : for Canada? : Thanks, Al From owner-software@net.bio.net Thu Dec 07 22:00:00 1995 Path: biosci!rutgers!csn!carbon!night.primate.wisc.edu!sdd.hp.com!swrinde!howland.reston.ans.net!nntp.coast.net!zombie.ncsc.mil!cs.umd.edu!haven.umd.edu!news.ums.edu!umabnet.ab.umd.edu!umabnet.ab.umd.edu!mremingt From: "Mary P. Remington" Newsgroups: bionet.software Subject: SAAB program for protein binding site consensus? Date: Thu, 7 Dec 1995 19:25:06 -0500 Organization: University of Maryland at Baltimore Lines: 4 Message-ID: NNTP-Posting-Host: umabnet.ab.umd.edu Mime-Version: 1.0 Content-Type: TEXT/PLAIN; charset=US-ASCII Is anyone familiar with this program? Where is in available? It apparently looks for consensus sequences of protein binding sites. Any help appreciated. Mary From owner-software@net.bio.net Fri Dec 08 22:00:00 1995 Path: biosci!CS.Arizona.EDU!news.Arizona.EDU!hamblin.math.byu.edu!acs2.byu.edu!news.cuny.edu!caen!uwm.edu!vixen.cso.uiuc.edu!newsfeed.internetmci.com!in2.uu.net!svc.portal.com!news1.best.com!shellx.best.com!shellx.best.com!not-for-mail From: jquinn@shellx.best.com (BIOCHEMISTRY.COM) Newsgroups: bionet.software Subject: C++ class library of sequence analysis functions? Date: 8 Dec 1995 08:00:28 -0800 Organization: Best Internet Communications Lines: 8 Message-ID: <4a9nes$j5i@shellx.best.com> NNTP-Posting-Host: shellx.best.com X-Newsreader: TIN [version 1.2 PL2] Hi, I am developing a sequence analysis package. Does anyone know of a C library of pre-existing sequence analysis functions in the public domain? Thanks Greg From owner-software@net.bio.net Fri Dec 08 22:00:00 1995 Path: biosci!CS.Arizona.EDU!news.Arizona.EDU!hamblin.math.byu.edu!acs2.byu.edu!news.cuny.edu!news.sprintlink.net!newsfeed.internetmci.com!news.dfw.net!pcnet.com!kanabiz From: kanabiz@pcnet.com (Only educated updated brilliant people LEGALIZE!) Newsgroups: bionet.software Subject: Hugs not GUNS!!! Date: 9 Dec 1995 08:43:14 GMT Organization: PCNet, Connecticut's Internet Provider Lines: 1 Message-ID: <4abi72$1e7@pcnet2.pcnet.net> NNTP-Posting-Host: pcnet1.pcnet.com X-Newsreader: TIN [version 1.2 PL2] From owner-software@net.bio.net Fri Dec 08 22:00:00 1995 Path: biosci!CS.Arizona.EDU!news.Arizona.EDU!hamblin.math.byu.edu!acs2.byu.edu!news.cuny.edu!news.sprintlink.net!newsfeed.internetmci.com!swrinde!howland.reston.ans.net!ix.netcom.com!netnews From: larry22@ix.netcom.com(Larry O. Simmons ) Newsgroups: bionet.software Subject: Two Entry Level Software Engineers Date: 9 Dec 1995 14:49:49 GMT Organization: Netcom Lines: 23 Message-ID: <4ac7md$o7i@ixnews4.ix.netcom.com> NNTP-Posting-Host: ix-det3-26.ix.netcom.com X-NETCOM-Date: Sat Dec 09 6:49:49 AM PST 1995 SIMMONS HUMAN RESOURCE P.O. Box 37413 Oak Park, MI 48237 313-345-5354 / Fax: 313-345-1594 E-Mail:larry22@ix.netcom.com We are seeking to fill two entry level Software Engineering positions with a Virginia Electronics firm. These positions should have been filled yesterday. Must be willing to relocate. If you are fresh out of college or have 1-3 years experience in software development please respond. Degree: BS-Computer Science, Math or related field. Job: Develop software designs & codes. Develop debug test programs. Assembly or C, C++ helpful. Pay: $30-33,0000, fee paid by employer. Also have positions to fill in all aspects of Computer Technology, Software Development and Information Systems Technology, etc. Must be willing to relocate where the jobs are. Average salaries in the 70k range with experience. If your desire is simply to test the market I'll let you know what's out there. You decide from there. Larry O. Simmons SIMMONS HUMAN RESOURCE From owner-software@net.bio.net Fri Dec 08 22:00:00 1995 Path: biosci!CS.Arizona.EDU!news.Arizona.EDU!hamblin.math.byu.edu!acs2.byu.edu!news.cuny.edu!ukma!usenet.eel.ufl.edu!newsfeed.internetmci.com!uwm.edu!psuvax1!news.eecs.nwu.edu!newsfeed.acns.nwu.edu!movietone.ils.nwu.edu!news.ecn.bgu.edu!newspump.wustl.edu!gumby!newsserv.grfn.org!freenet!jim77 From: jim77@freenet.asg.com (James Pratt) Newsgroups: bionet.software Subject: Where in Canada? Date: 9 Dec 1995 11:29:51 GMT Organization: Grand Rapids Free-Net Lines: 11 Message-ID: <4abrvf$ct8@newsserv.grfn.org> NNTP-Posting-Host: freenet.grfn.org X-Newsreader: TIN [version 1.2 PL2] A good friend who is the director of a programming firm in Kiev, Ukraine will soon have the opportunity to immigrate to Canada. I am posing this question for him here since his internet connections to the usenet are impossible. He asks, which city in Canada would be the best choice to live in if programming business opportunities are the number one selection factor? Please respond to him directly if you can help this man. Thank you! oleg@trion.kiev.ua From owner-software@net.bio.net Fri Dec 08 22:00:00 1995 Path: biosci!CS.Arizona.EDU!news.Arizona.EDU!hamblin.math.byu.edu!acs2.byu.edu!news.cuny.edu!news.sprintlink.net!newsfeed.internetmci.com!news.dfw.net!pcnet.com!kanabiz From: kanabiz@pcnet.com (Only educated updated brilliant people LEGALIZE!) Newsgroups: bionet.software Subject: build more PRISONS today! Date: 9 Dec 1995 08:47:11 GMT Organization: PCNet, Connecticut's Internet Provider Lines: 1 Message-ID: <4abief$1e7@pcnet2.pcnet.net> NNTP-Posting-Host: pcnet1.pcnet.com X-Newsreader: TIN [version 1.2 PL2] From owner-software@net.bio.net Fri Dec 08 22:00:00 1995 Path: biosci!ihnp4.ucsd.edu!agate!usenet.kornet.nm.kr!usenet From: ishjok@chollian.dacom.co.kr (Im,S.H) Newsgroups: bionet.software Subject: Looking For PCGENE DNA analysis program Date: Sun, 10 Dec 1995 02:20:52 GMT Organization: KORNET (Korea Telecom) Lines: 5 Message-ID: <4abkgs$b7a@usenet.kornet.nm.kr> NNTP-Posting-Host: soback.kornet.nm.kr X-Newsreader: Forte Free Agent 1.0.82 I am looking for latest version of PCGENE DNA analysis software. I have 1991 version(ver.7.0) . So If any one know where can I get the software,Please let me know. Sin-Hyeog Im From owner-software@net.bio.net Sat Dec 09 22:00:00 1995 Path: biosci!galaxy.ucr.edu!ihnp4.ucsd.edu!agate!howland.reston.ans.net!newsfeed.internetmci.com!in2.uu.net!news00.sunet.se!sunic!news99.sunet.se!news.uni-c.dk!news.daimi.aau.dk!gordon From: geoflbs@aau.dk (Lars Barup Sorensen) Newsgroups: bionet.software,sci.bio.ecology Subject: Re: graphics software help! Date: Sun, 10 Dec 95 19:15:27 GMT Organization: DAIMI, Computer Science Dept. at Aarhus University Lines: 35 Message-ID: <4aemlf$499@krone.daimi.aau.dk> References: <4a0dfr$qv5$1@mhadg.production.compuserve.com> NNTP-Posting-Host: gordon.geofysik.aau.dk X-Newsreader: News Xpress Version 1.0 Beta #4 Xref: biosci bionet.software:14136 sci.bio.ecology:15162 In article <4a0dfr$qv5$1@mhadg.production.compuserve.com>, Louise Lapierre <74267.2135@CompuServe.COM> wrote: >Could you please help me find an adequate software package for >making scientific graphs. I need something that will make >publication quality multiple graphs with numerous species density >classes on an axes of distance in a river. I would also need a >graphing tool to make box plots on an distance scale on a river, >as well as error bars on linear graph. The program would also >require some drawing possibilities to be able to make >inscriptions of towns and effluent from industries. >If you know of any software that can do this without to much >tampering, please reply. >I have used Freelance, Harvard Graphic and Sigma plot, all for >DOS. Do the windows versions work better? > I would recommend Grapher from Golden software, they make both dos and windows versions. It should be possibly to get a demo from the following address : ftp.golden.com -Lars _______________________________________________________________________ Lars Barup Sorensen phone (home) : +45 86129950 Department of Earth Science phone (office) : +45 89424327 Laboratory of Geophysics fax : +45 86101003 University of Aarhus E-mail : geoflbs@aau.dk Denmark WWW : http://www.geofysik.aau.dk/~lbs ----------------------------------------------------------------------- Brooke's Law: Whenever a system becomes completely defined, some damn fool discovers something which either abolishes the system or expands it beyond recognition. _______________________________________________________________________ From owner-software@net.bio.net Sat Dec 09 22:00:00 1995 Path: biosci!CS.Arizona.EDU!news.Arizona.EDU!hamblin.math.byu.edu!acs2.byu.edu!news.cuny.edu!news.sprintlink.net!usenet.kornet.nm.kr!usenet.hana.nm.kr!usenet.seri.re.kr!news.dacom.co.kr!newsfeed.internetmci.com!howland.reston.ans.net!newsjunkie.ans.net!merlion.singnet.com.sg!temasek.teleview.com.sg!temasek.teleview.com.sg!not-for-mail From: lancette@temasek.teleview.com.sg (Paul Lancette) Newsgroups: bionet.software Subject: PROJECT PLANNING-Eng+Fin$$-Build+Operate-DEMO Date: 10 Dec 1995 01:09:08 +0800 Organization: Teleview, Singapore Telecom Lines: 50 Message-ID: <4acfrk$6dt@temasek.teleview.com.sg> NNTP-Posting-Host: temasek.teleview.com.sg Summary: FEASIBILITY STUDY SOFTWARE PROGRAM - X-Newsreader: TIN [version 1.2 PL2] PROJECT PLANNING-Eng+Finance-Build+Operate-DEMO for International and Local Project Development. by COSTaFAC DEVELOPMENT CO. Singapore Thank you for choosing this posting. You are in for a nice surprise! The Self-extracting interactive Demo "costafac.exe" can be downloaded f