From owner-srs@net.bio.net Sun Mar 01 22:00:00 1998 Path: biosci!agate!howland.erols.net!news.maxwell.syr.edu!nntp.news.xara.net!xara.net!rill.news.pipex.net!pipex!server1.netnews.ja.net!hgmp.mrc.ac.uk!not-for-mail From: "Thure Etzold" Newsgroups: bionet.software.srs Subject: Re: A nasty bug in the SRS link indexing Date: Mon, 2 Mar 1998 16:36:34 -0000 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 33 Message-ID: <6den79$hve$1@niobium.hgmp.mrc.ac.uk> References: <6cej5n$b72$1@mach.vub.ac.be> NNTP-Posting-Host: idefix.ebi.ac.uk X-Newsreader: Microsoft Outlook Express 4.71.1712.3 X-MimeOLE: Produced By Microsoft MimeOLE V4.71.1712.3 > Dear SRS developers and fellow SRS server managers, > >While trying to implement a direct link between PIR and EMBL/GENBANK I >ran into trouble. After some searching I found that the cause was a bug >in the SRS software itself. It seems that when there is e.g. an Icarus >line : >$link:[@SWISSPROT_DB to:@?EMBL_DB token:'link|EMBL' toField:@DF_Accession] >not just tokens with code EMBL are put in the index, but all tokens. > this problem has been reported before and i had problems reproducing it. it seems that it does occur rather infrequently and not as a rule. >To convince yourself of this, try the following : >search in SWISSPROT the entry with ID HA12_MOUSE >then make the link to EMBL >you will see that besides the two correct EMBL entries you also find >A02201 which is not related to the sequence SWISSPROT:HA12_MOUSE but >happens to have the same accession number as the corresponding PIR >entry. > >SRS is great, but keeping it alive costs a lot of sweat and tears... very sorry about that but your error report help a lot! regards thure From owner-srs@net.bio.net Mon Mar 02 22:00:00 1998 Path: biosci!agate!logbridge.uoregon.edu!Cabal.CESspool!bofh.vszbr.cz!lyra.csx.cam.ac.uk!hgmp.mrc.ac.uk!not-for-mail From: "Thure Etzold" Newsgroups: bionet.software.srs Subject: Re: A nasty bug in the SRS link indexing Date: Tue, 3 Mar 1998 19:40:18 -0000 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 23 Message-ID: <6dhmbs$4hv$1@niobium.hgmp.mrc.ac.uk> References: <6cej5n$b72$1@mach.vub.ac.be> <6den79$hve$1@niobium.hgmp.mrc.ac.uk> <34FC3A4C.8E5FDBF4@dl.ac.uk> NNTP-Posting-Host: idefix.ebi.ac.uk X-Newsreader: Microsoft Outlook Express 4.71.1712.3 X-MimeOLE: Produced By Microsoft MimeOLE V4.71.1712.3 Martin Hilbers wrote in message <34FC3A4C.8E5FDBF4@dl.ac.uk>... >It may have something to do with the "-s unix" command line option >used when you do a srsbuild via srscheck. Have a look at this: BINGO! thanks a million, yes that is the problem. There is a straightforward solution but which is a bit complicated to insert for a non-srs programmer. I suggest the following solution: edit the file SRSICA/srscheck.i and replace all "-s '%s'" with "" ...empty string the -s unix is default anyway. The only advantage is that the examples with -s demo and srscheck don't work anymore ...but i guess, you are already beyond that! regards thure From owner-srs@net.bio.net Mon Mar 02 22:00:00 1998 Path: biosci!agate!logbridge.uoregon.edu!news.maxwell.syr.edu!nntp.news.xara.net!xara.net!server5.netnews.ja.net!daresbury!usenet From: Martin Hilbers Newsgroups: bionet.software.srs Subject: Re: A nasty bug in the SRS link indexing Date: Tue, 03 Mar 1998 17:13:49 +0000 Organization: SEQNET Lines: 122 Distribution: bionet Message-ID: <34FC3A4C.8E5FDBF4@dl.ac.uk> References: <6cej5n$b72$1@mach.vub.ac.be> <6den79$hve$1@niobium.hgmp.mrc.ac.uk> NNTP-Posting-Host: s-ind2.dl.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 4.04 [en] (X11; I; IRIX 5.3 IP12) Thure Etzold wrote: > > > Dear SRS developers and fellow SRS server managers, > > > >While trying to implement a direct link between PIR and EMBL/GENBANK I > >ran into trouble. After some searching I found that the cause was a bug > >in the SRS software itself. It seems that when there is e.g. an Icarus > >line : > >$link:[@SWISSPROT_DB to:@?EMBL_DB token:'link|EMBL' toField:@DF_Accession] > >not just tokens with code EMBL are put in the index, but all tokens. > > > > this problem has been reported before and i had problems reproducing it. it > seems that it does occur rather infrequently and not as a rule. > > >To convince yourself of this, try the following : > >search in SWISSPROT the entry with ID HA12_MOUSE > >then make the link to EMBL > >you will see that besides the two correct EMBL entries you also find > >A02201 which is not related to the sequence SWISSPROT:HA12_MOUSE but > >happens to have the same accession number as the corresponding PIR > >entry. > > > >SRS is great, but keeping it alive costs a lot of sweat and tears... > > very sorry about that but your error report help a lot! > > regards > thure It may have something to do with the "-s unix" command line option used when you do a srsbuild via srscheck. Have a look at this: # srsbuild swissprot -l -nn ...reading links to "GENBANK" ...reading links to "EMBL" ...reading links to "PIR" ...reading links to "PDB" ...reading links to "OMIM" ...processing /usr/local/gcg/data/gcgswissprot/swissprot.ref ...processing /usr/local/gcg/data/gcgswissprot/swissprot.seq ...wrote link from "SWISSPROT" to "GENBANK" valid references: 109413, invalid references: 158, total number of links: 112514 ...wrote link from "SWISSPROT" to "EMBL" valid references: 109396, invalid references: 175, total number of links: 112116 ...wrote link from "SWISSPROT" to "PIR" valid references: 47054, invalid references: 75, total number of links: 39124 ...wrote link from "SWISSPROT" to "PDB" valid references: 5753, invalid references: 51, total number of links: 5753 ...wrote link from "SWISSPROT" to "OMIM" valid references: 3760, invalid references: 0, total number of links: 3760 ...program "srsbuild" completed successfully. looks good. Test it: # getz '[swissprot-id:HA12_MOUSE]>embl' EMBL:MM190 EMBL:MMU47326 now with "-s unix": # srsbuild swissprot -l -nn -s unix ...reading links to "GENBANK" ...reading links to "EMBL" ...reading links to "PIR" ...reading links to "PDB" ...reading links to "REBASE" ...reading links to "OMIM" ...processing /usr/local/gcg/data/gcgswissprot/swissprot.ref ...processing /usr/local/gcg/data/gcgswissprot/swissprot.seq ..wrote link from "SWISSPROT" to "GENBANK" valid references: 125252, invalid references: 123397, total number of links: 128143 ...wrote link from "SWISSPROT" to "EMBL" valid references: 125155, invalid references: 123494, total number of links: 127675 ...wrote link from "SWISSPROT" to "PIR" valid references: 49253, invalid references: 199396, total number of links: 41352 ...wrote link from "SWISSPROT" to "PDB" valid references: 5753, invalid references: 242896, total number of links: 5753 ...wrote link from "SWISSPROT" to "OMIM" valid references: 3766, invalid references: 244883, total number of links: 3766 ...program "srsbuild" completed successfully. Now the system tries to match all 250.000 links to all databases, and a test: # getz '[swissprot-id:HA12_MOUSE]>embl' EMBL:A02201 EMBL:MM190 EMBL:MMU47326 pulls out A02201 - which should be a link to PIR Cheers, Martin -- ------------------------------------------------------------------- | Martin Hilbers http://www.dci.clrc.ac.uk/Person.asp?m.p.hilbers | | SEQNET | E-mail: m.p.hilbers@dl.ac.uk | | Daresbury Laboratory | Tel: +44-1925-603492 | | Daresbury, Warrington | Fax: +44-1925-603100 | | Cheshire WA4 4AD | SEQNET is the UK national EMBNet node | | United Kingdom | http://www.seqnet.dl.ac.uk/ | ------------------------------------------------------------------- From owner-srs@net.bio.net Tue Mar 03 22:00:00 1998 Path: biosci!agate!newsfeed.kornet.nm.kr!news.maxwell.syr.edu!news-ge.switch.ch!news-fra1.dfn.de!news.!King.Louis From: Luca TOLDO Newsgroups: bionet.software.srs Subject: Q: Parallel srsupdate ? Date: Wed, 04 Mar 1998 14:13:48 +0100 Organization: Merck KGaA SIS Lines: 6 Message-ID: <34FD538C.6C58D92E@popserver.bci.merck.de> NNTP-Posting-Host: 155.250.217.122 Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 4.04 [en] (WinNT; I) Dear Colleagues, I am seriously concerned with stability and performance of SRS. I would very much appreciate to learn the final statement on the efforts planned and timeschedules for parallelization of srsupdate. regards From owner-srs@net.bio.net Tue Mar 03 22:00:00 1998 Path: biosci!bloom-beacon.mit.edu!news.kodak.com!news-pen-14.sprintlink.net!news.sprintlink.net!Sprint!128.122.253.90!newsfeed.nyu.edu!news.idt.net!netnews.com!news-xfer.netaxs.com!news-feed.inet.tele.dk!Cabal.CESspool!bofh.vszbr.cz!lyra.csx.cam.ac.uk!hgmp.mrc.ac.uk!not-for-mail From: "Thure Etzold" Newsgroups: bionet.software.srs Subject: Re: Parallel srsupdate ? Date: Wed, 4 Mar 1998 18:49:26 -0000 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 22 Message-ID: <6dk7of$do7$1@niobium.hgmp.mrc.ac.uk> References: <34FD538C.6C58D92E@popserver.bci.merck.de> NNTP-Posting-Host: idefix.ebi.ac.uk X-Newsreader: Microsoft Outlook Express 4.71.1712.3 X-MimeOLE: Produced By Microsoft MimeOLE V4.71.1712.3 Luca TOLDO wrote in message <34FD538C.6C58D92E@popserver.bci.merck.de>... >Dear Colleagues, >I am seriously concerned with stability and performance of SRS. I would >very much appreciate to learn the final statement on the efforts planned >and timeschedules for parallelization of srsupdate. >regards the main obstacle to this and other improvements such as offline indexing was the complexity of the srscheck program. It grew over the last years into a bit of a monster that made extensions impossible. We rewrote it in the last days and it feels much lighter now. We plan for 5.2 to have a working solution for the offline indexing and hopefully the parallelization of the EMBL indexing. The new srscheck will produce the old srsupdate and/or a makefile which allows the whole updating process to be parallelized. regards thure From owner-srs@net.bio.net Sun Mar 08 22:00:00 1998 Path: biosci!bloom-beacon.mit.edu!news.kodak.com!news-pen-14.sprintlink.net!206.229.87.26!news-east.sprintlink.net!news-peer.sprintlink.net!news.sprintlink.net!Sprint!newsfeed.nacamar.de!news-kar1.dfn.de!news.embl-heidelberg.de!usenet From: Ramu Chenna Newsgroups: bionet.software.srs Subject: PDBFINDER parser correction Date: 9 Mar 1998 11:19:59 GMT Organization: EMBL Heidelberg Lines: 40 Distribution: world Message-ID: <6e0j8v$d9t@lion.embl-heidelberg.de> NNTP-Posting-Host: shag.embl-heidelberg.de Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 1.12IS (X11; I; IRIX 5.3 IP22) X-URL: news:bionet.software.srs?ALL Hi All, (I) RFactor indice in pdbfinder is empty for the few sites I checked! Change $field:[@DF_R_FACTOR code:rFactor index:real indexToken:'numX|rFactor'] to $field:[@DF_R_FACTOR code:rFactor index:real indexToken:'realX|rFactor'] and reindex. Still when you search for Rfactor <= 20.0 (or 1.10 etc.,) it gives segmentation fault! If YOU FIX IT please let us know! (II) Index of twm is empty! TotWaterMols twm num 0 0 0 0 3/7/98 0 1 Change twatermods to twatermols in pdbfinder.is Ramu _______________________________________________________________ Chenna Ramu; EMBL; Postfach 10.2209; 69012 Heidelberg; Germany. Email: chenna@embl-heidelberg.de Url: http://www.embl-heidelberg.de/~chenna/ Tel: (49) 6221 387530 (Off) ; Fax: (49) 6221 387517 ______ From owner-srs@net.bio.net Sun Mar 08 22:00:00 1998 Path: biosci!agate!howland.erols.net!news-feed1.tiac.net!cam-news-hub1.bbnplanet.com!news.bbnplanet.com!feed1.news.luth.se!luth.se!Cabal.CESspool!bofh.vszbr.cz!lyra.csx.cam.ac.uk!hgmp.mrc.ac.uk!not-for-mail From: Peter Rice Newsgroups: bionet.software.srs Subject: Re: PDBFINDER parser correction Date: 09 Mar 1998 12:56:50 +0000 Organization: The Sanger Centre Lines: 18 Sender: pmr@unst.sanger.ac.uk Message-ID: References: <6e0j8v$d9t@lion.embl-heidelberg.de> NNTP-Posting-Host: unst.sanger.ac.uk X-Newsreader: Gnus v5.5/Emacs 20.2 Ramu Chenna writes: > Still when you search for Rfactor <= 20.0 (or 1.10 etc.,) > it gives segmentation fault! If YOU FIX IT please let us know! Worked for me (after your fix) on both Irix and Digital Unix. We have a PDBFINDER release from Jan 28th. The command I used was: getz '[pdbfinder-rfa#:1.10]' -f rfa -f id -- ---------------------------------------------------------------------- Peter Rice | Informatics Division, The Sanger Centre, E-mail: pmr@sanger.ac.uk | Wellcome Trust Genome Campus, Tel: (44) 1223 494967 | Hinxton, Cambridge, CB10 1SA, England Fax: (44) 1223 494919 | URL: http://www.sanger.ac.uk/Users/pmr/ From owner-srs@net.bio.net Sun Mar 08 22:00:00 1998 Path: biosci!agate!howland.erols.net!news2.chicago.iagnet.net!qual.net!iagnet.net!207.217.77.43!newsfeed1.earthlink.net!uunet!in3.uu.net!netnews.sbphrd.com!not-for-mail From: Ray Wang Newsgroups: bionet.software.srs Subject: Re: Web Browser and SRS Date: Mon, 09 Mar 1998 16:04:16 -0500 Organization: SmithKline Beecham Pharmaceuticals Research & Development Lines: 11 Message-ID: <35045950.A98@cbis.ece.drexel.edu> References: <34FF0275.5247@cbis.ece.drexel.edu> NNTP-Posting-Host: phu824.sbphrd.com Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 3.01Gold (X11; I; SunOS 5.5.1 sun4u) Ray Wang wrote: > > Are there some people using Internet Explorer to browse SRS? Recently I > used SRS in IE, neither can I get as many entries as I get from SRS in > Netscape nor the query results can be properly displayed. > > Wondering how to solve the problem. > > Ray Probably the problem is due to the misconfiguration of IE. -Ray From owner-srs@net.bio.net Mon Mar 09 22:00:00 1998 Path: biosci!agate!howland.erols.net!news-peer.sprintlink.net!news.sprintlink.net!Sprint!newsfeed.nacamar.de!news-kar1.dfn.de!news.embl-heidelberg.de!usenet From: Weare@EuropeMail.com (Johnathon Weare) Newsgroups: bionet.software.srs Subject: Re: Web Browser and SRS Date: 10 Mar 1998 20:45:20 +0100 Organization: Biocomputing, EMBL Heidelberg, Germany Lines: 29 Sender: weare@fifi.embl-heidelberg.de Distribution: world Message-ID: References: <34FF0275.5247@cbis.ece.drexel.edu> <35045950.A98@cbis.ece.drexel.edu> <6e33l8$aa6$1@niobium.hgmp.mrc.ac.uk> NNTP-Posting-Host: fifi.embl-heidelberg.de Encryption-by: McWurst McWurst-Schluessel: O*Uef!$p&^afC1fe@0n--9`#gA||~[gf)*fcq26 X-Newsreader: Gnus v5.3/Emacs 19.34 >>>>> "T" == Thure Etzold writes: T> Ray Wang wrote in message <35045950.A98@cbis.ece.drexel.edu>... >> Ray Wang wrote: >>> >>> Are there some people using Internet Explorer to browse SRS? >>> Recently I used SRS in IE, neither can I get as many entries as I >>> get from SRS in Netscape nor the query results can be properly >>> displayed. >>> >> >> Probably the problem is due to the misconfiguration of IE. -Ray T> we have tested SRS5 with both IE4 and netscape and it worked. I T> can't say anything about IE3 but would expect a problems. T> thure my Solaris IE4.0P works fine (I forced myself to say that). IE3 isn't available for unix. Johnny -- Johnathon Weare -- EMBL -- Weare@EuropeMail.com --- http://www.gpcr.org/johnny/ From owner-srs@net.bio.net Mon Mar 09 22:00:00 1998 Path: biosci!daresbury!lyra.csx.cam.ac.uk!hgmp.mrc.ac.uk!not-for-mail From: "Thure Etzold" Newsgroups: bionet.software.srs Subject: Re: Web Browser and SRS Date: Tue, 10 Mar 1998 10:11:11 -0000 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 17 Message-ID: <6e33l8$aa6$1@niobium.hgmp.mrc.ac.uk> References: <34FF0275.5247@cbis.ece.drexel.edu> <35045950.A98@cbis.ece.drexel.edu> NNTP-Posting-Host: idefix.ebi.ac.uk X-Newsreader: Microsoft Outlook Express 4.71.1712.3 X-MimeOLE: Produced By Microsoft MimeOLE V4.71.1712.3 Ray Wang wrote in message <35045950.A98@cbis.ece.drexel.edu>... >Ray Wang wrote: >> >> Are there some people using Internet Explorer to browse SRS? Recently I >> used SRS in IE, neither can I get as many entries as I get from SRS in >> Netscape nor the query results can be properly displayed. >> > >Probably the problem is due to the misconfiguration of IE. -Ray we have tested SRS5 with both IE4 and netscape and it worked. I can't say anything about IE3 but would expect a problems. thure From owner-srs@net.bio.net Tue Mar 10 22:00:00 1998 Path: biosci!agate!newsfeed.wli.net!news-spur1.maxwell.syr.edu!news.maxwell.syr.edu!newsfeed.internetmci.com!194.87.0.28!demos!news1.relcom.ru!news.nsk.su!tsiren!news.itfs.nsk.su!usenet From: "Sergey V. Lavryushev" Newsgroups: bionet.software.srs Subject: Molecular Biological Server in Russia Date: Wed, 11 Mar 1998 21:30:28 +0600 Organization: Unknown Lines: 12 Distribution: world Message-ID: <6e6ami$egf@news.itfs.nsk.su> NNTP-Posting-Host: vip.iae.nsk.su X-Newsreader: Microsoft Outlook Express 4.72.2106.4 X-MimeOLE: Produced By Microsoft MimeOLE V4.72.2106.4 Molecular Biological Server in Russia, Novosibirsk Data bases (srs, Java Viewers), programs and system in on-line URL: http://wwwmgs.bionet.nsc.ru ------------------------- SVL -------------------------- From owner-srs@net.bio.net Wed Mar 11 22:00:00 1998 Path: biosci!agate!newsgate.duke.edu!nntp-out.monmouth.com!newspeer.monmouth.com!rill.news.pipex.net!pipex!news-feed.inet.tele.dk!bofh.vszbr.cz!news.inet.tele.dk!not-for-mail From: "Flemming, Linette og Niquita (Birlie)" Newsgroups: bionet.software.acedb,bionet.software.srs Subject: Webexpress Evaluation Days Help??????????????? Date: Thu, 12 Mar 1998 00:55:01 +0100 Lines: 9 Message-ID: <6e78i5$2j62$1@news-inn.inet.tele.dk> NNTP-Posting-Host: ppp33.nsk.tele.dk X-Newsreader: Microsoft Outlook Express 4.71.1712.3 X-MimeOLE: Produced By Microsoft MimeOLE V4.71.1712.3 Xref: biosci bionet.software.acedb:1647 bionet.software.srs:995 Is there anyone who can help me, to get another 30 days to use webexpress. I have use my 30 days, and now when I start webexpress, It is checking out the day I first started the program where is the file which hide the start date, so I can delete It. Help me? Thanks. birlie@yahoo.com From owner-srs@net.bio.net Thu Mar 12 22:00:00 1998 Path: biosci!britbio.co.uk!dudgeon From: dudgeon@britbio.co.uk (Tim Dudgeon) Newsgroups: bionet.software.srs Subject: wgetz without HTML markup Date: 13 Mar 1998 01:03:57 -0800 Organization: British Biotech Pharmaceuticals Lines: 14 Sender: daemon@net.bio.net Distribution: world Message-ID: <3508F4E3.AA5147C@britbio.co.uk> NNTP-Posting-Host: net.bio.net Hi all, I can't figure out how to turn off HTML markup in wgetz. It's simple to specify in getz, but I can't find the option for wgetz. I need to configure a mime type, but get the data without any html markup. Can anyone help? Cheers Tim -- Dr. Tim Dudgeon Phone: 01865 748747 British Biotech Pharmaceuticals Plc. FAX: 01865 780814 Watlington Road, Oxford, OX4 5LY, UK email: dudgeon@britbio.co.uk From owner-srs@net.bio.net Fri Mar 13 22:00:00 1998 Path: biosci!agate!newsfeed.wli.net!nntp2.dejanews.com!nnrp1.dejanews.com!not-for-mail From: r_m_apson@bigfoot.com Newsgroups: bionet.molbio.methds-reagnts,bionet.plants,bionet.software.srs,bionet.toxicology Subject: I've had it with jtsr-stock@jtsr-stock.com! Date: Sat, 14 Mar 1998 00:23:39 -0600 Organization: Deja News - The Leader in Internet Discussion Lines: 138 Message-ID: <6ed7m9$297$1@nnrp1.dejanews.com> NNTP-Posting-Host: 206.133.186.61 X-Article-Creation-Date: Sat Mar 14 06:23:39 1998 GMT X-Http-User-Agent: Mozilla/3.03Gold (Win16; U) Xref: biosci bionet.molbio.methds-reagnts:65790 bionet.plants:18160 bionet.software.srs:997 bionet.toxicology:2123 I did a lookup of all the sites this slimeball spammed after getting another message in my PRIVATE mailbox today. After looking at their website, I had an idea that may finally get to them. They have a "public relations" page where you can get stock information by sending them mailing information in a form. I figure if enough people gave them fake addresses and bombarded them with this, we may get somewhere on this. In fact, I put together a list of snailmail addresses that could be used, from other spam. I couldn't get the main page to send, so I saved it as an htm file and opened it later. Had no problem. Here it is: JT's Restaurant - Public Relations

JT's Restaurants, Inc.

Public Relations

For the latest information, contact our Public Relations Department at
1-888-295-6365
or
Fill out the form below to have an investor packet sent to you.

Name :
Address :
City:
State: Zip Code :
Home Phone :
Work Phone :
Best Time to Call :
E-Mail :
Comments :

© 1997 - JT's Restaurants, Inc. - All rights reserved.
And of course, some spammer addresses to use: JS Enterprises P.O. Box 278 Clovis, CA 93613 USA P.O. Box 276 Bellmawr, NJ 0809 701 South Capital of Texas Highway Suite C-1244 Austin, Texas 78746 USA TSF Marketing P.O. Box 4914 Ontario, CA 91761 ^^^Travel^^Guide$^^^ 16787 Beach Blvd Suite#225 Huntington Beach, Ca. 92647 Precious Times Publications 18551 Chase Street Northridge, California 91324 B&M Marketing International, 172 Boston Street, Dept. S1, Coventry, RI 02816 NET-2000 2887 North Green Valley Parkway Suite #809 Henderson, NV 89014 4676 Commercial St. SE Suite 201 Salem, Oregon 97302 2321 E. 52nd. Box #48 Indianapolis, IN 46205-1469 P.O. Box 72 Peewee Valley, KY 40056-0072 P.O. Box 787 Pullman, WA 99163 46088-B Larson Beach Road Loon Lake, WA 99148 PO BOX 606 Hilton, NY 14468-0606 P.O. Box 335 Midland Park, NJ 07432 Michael Waddell 2245 Peach Ave. #8 Clovis, CA 93612 14341 Inglewood Ave., #183 Hawthorne, CA 90250 1525 Aviation Blvd., Suite 360 Redondo Beach, CA 90278 Just use some fake name along with the address. If anyone finds info on these dirtbags, pass it along to r_m_apson@nospam.bigfoot.com Michael Annoy a Spammer: http://www.angelfire.com/ca/theantispammer/spam.html -----== Posted via Deja News, The Leader in Internet Discussion ==----- http://www.dejanews.com/ Now offering spam-free web-based newsreading From owner-srs@net.bio.net Sun Mar 15 22:00:00 1998 Path: biosci!agate!howland.erols.net!news-peer.sprintlink.net!news.sprintlink.net!Sprint!newsfeed.internetmci.com!158.43.192.17!rill.news.pipex.net!pipex!sun4nl!news.Amsterdam.NL.net!sci.kun.nl!not-for-mail From: Jack Leunissen Newsgroups: bionet.software.srs Subject: Re: Web Browser and SRS Date: Mon, 16 Mar 1998 16:02:44 +0100 Organization: CAOS/CAMM Center Lines: 30 Message-ID: <350D3F13.AB266166@caos.kun.nl> References: <34FF0275.5247@cbis.ece.drexel.edu> <35045950.A98@cbis.ece.drexel.edu> <6e33l8$aa6$1@niobium.hgmp.mrc.ac.uk> NNTP-Posting-Host: cammsg3.caos.kun.nl Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 4.03 [en] (X11; I; IRIX 6.2 IP22) Thure Etzold wrote: > Ray Wang wrote in message <35045950.A98@cbis.ece.drexel.edu>... > >Ray Wang wrote: > >> > >> Are there some people using Internet Explorer to browse SRS? Recently I > >> used SRS in IE, neither can I get as many entries as I get from SRS in > >> Netscape nor the query results can be properly displayed. > >> > > > >Probably the problem is due to the misconfiguration of IE. -Ray > > we have tested SRS5 with both IE4 and netscape and it worked. I can't say > anything about IE3 but would expect a problems. > > IE4 is fine. IE3 is problematic, since it always preselects items in a selector. This meansthat you always have some feature selected, AND search for it, even when you don't intend to do so. And you cannot switch it off... Jack Jack A.M. Leunissen | Email: jackl@caos.kun.nl CAOS/CAMM Center | Tel. : +31 24 365 22 48 University of Nijmegen | Fax : +31 24 365 29 77 Nijmegen, The Netherlands | Www : http://www.caos.kun.nl From owner-srs@net.bio.net Wed Mar 18 22:00:00 1998 Path: biosci!internet!biosci!not-for-mail From: biohelp (BIOSCI Administrator) Newsgroups: bionet.software.srs Subject: BIOSCI/bionet miniFAQ & Fundraiser Date: 19 Mar 1998 02:00:07 -0800 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 233 Sender: daemon@net.bio.net Distribution: world Message-ID: <199803191000.CAA04885@net.bio.net> NNTP-Posting-Host: net.bio.net (LAST REVISION: 30-JUL-95) This BIOSCI "miniFAQ" is designed to answer the questions that come up the *most frequently*. The main BIOSCI FAQ (Frequently Asked Questions) is accessible on the World Wide Web at URL http://www.bio.net/. If you can not find an answer to your question in this or other documentation, the BIOSCI technical support staff answers e-mail queries sent to biosci-help@net.bio.net We can only answer questions about the use of the newsgroups and mailing lists. We unfortunately do not have the staff to do Internet information searches or answer scientific questions. Please post those to the appropriate BIOSCI/bionet newsgroups. Contents: -------- 0) BIOSCI NEEDS YOUR SUPPORT!! 1) Using the WWW to access the BIOSCI/bionet newsgroups. 2) What to do about "spams," i.e., junk mail, ads, etc. 3) Examples of subscribing and unsubscribing to the mailing lists. 4) The BIOSCI user address and research interest directory. 0) BIOSCI NEEDS YOUR SUPPORT!! ------------------------------ BIOSCI's government funding has been expended, and we are now operating solely from advertising revenue that we have raised from our Web site at http://www.bio.net/. We need just a few minutes of your time to help us serve you. You can do two important things which will take very little time for you individually and will immensely help us continue to help you. First, please use our WWW system at http://www.bio.net/ to access the archives. You can post or reply to messages via your Web browser as described in item #1 below. Your usage helps attract sponsors. If you contact any of our sponsors, please be sure to thank them for supporting BIOSCI. It is critical for them to get this feedback if they are to continue their sponsorship for the long term. Second, if you work for a company or organization that provides products or services of interest to the biology community, please pass this message on to your marketing or marketing communications department or other appropriate group. Please ask them to help support BIOSCI by sponsoring our Web site and explain the uses and benefits of the system to the biology community. If they are interested, they can then contact us for further information at our tech support address, biosci-help@net.bio.net. 1) Using the WWW to access the BIOSCI/bionet newsgroups. -------------------------------------------------------- As of 10 December 1995, all BIOSCI/bionet full newsgroups are accessible through the World Wide Web (WWW) at URL http://www.bio.net. One can read and reply publicly or privately to both recent postings and archived messages through one's Web browser if it is configured properly to send e-mail. Each newsgroup is equipped with its own WAIS index. The main BIOSCI home page also has access to the BIO-JOURNALS Table of Contents database WAIS index and the BIOSCI user address database described in another item further below. 2) What to do about "spams," i.e., junk mail, ads, etc. ------------------------------------------------------- BIOSCI is a set of parallel USENET newsgroups (the "bionet" groups), mailing lists, and a hypermail archive at URL http://www.bio.net/. The same postings are distributed on all media (except for a small number of mailing-list-only groups at net.bio.net). Unfortunately it is becoming a despicable practice on the Internet (by a few people out to make a fast buck) to do automated mass postings to thousands of newsgroups and mailing lists. These attempts to grab free advertising are refered to as "spams" in the usual, somewhat boneheaded, net terminology. USENET is more susceptible to this practice, and many spams originate on the USENET groups and then are passed on to the mailing lists. However, spammers also get lists of mailing addresses and hit these too, so neither medium is immune. What should you do personally if you get junk mail? --------------------------------------------------- Just delete it and move on without reading it further. Filing a protest is becoming increasingly useless because spammers are often disguising the addresses where the messages are sent from. Unless you really understand Internet mail systems, your attempt at protest by sending replies to the message will often end up being sent to the address of an innocent person that the spammer is victimizing. What can BIOSCI/bionet do to protect its newsgroups? ---------------------------------------------------- The only solution currently available is to moderate the newsgroup. If this newsgroup is already moderated, then you are in good shape. Moderation protects the USENET distribution from about 95% of the spams that are being sent to date and protects the mailing lists completely. Moderation means, however, that someone has to take the time to review each message before it goes out. We have set up software here that simply allows the moderator to forward to an address at net.bio.net messages that (s)he wishes to have distributed. This takes no more time than that needed to read the message and pass it on, say about 1 min. per message. Most newsgroups currently have a discussion leader who is responsible for their newsgroup. The discussions leaders and their e-mail addresses are listed in the BIOSCI Information Sheet which is available on the Web at http://www.bio.net/. If a newsgroup is being hit with too many junk postings, please contact the discussion leader for that group and see if there is interest in moderating the group. Please do not assume that by simply posting a complaint to the newsgroup itself, anyone on the BIOSCI staff will act on your complaint. With close to 100 newsgroups to run, the BIOSCI staff has to rely on the discussion leaders of each newsgroup to report problems directly to us at biosci-help@net.bio.net. We will moderate any of our newsgroups if the discussion leader tells us that the readership of the group wishes to do so and if a moderator is willing to do the work. For most BIOSCI/bionet groups, this entails only a few minutes of work each day. Moderating a newsgroup will resolve probably 95% of the junk postings on the USENET distribution. Unfortunately there are easy ways for determined spammers to override the moderation mechanism on USENET, but we can protect our e-mail subscribers from unwanted postings if the newsgroup is moderated. You can also access our newsgroups over the WWW at URL http://www.bio.net. While this Web interface will not stop spammers from trying to post to the groups, this will give you yet another way, besides using USENET news, to keep the junk out of your personal mail files. For those of you with local USENET news systems, the Web interface will also give you faster access to new newsgroups and recent postings. 3) Examples of subscribing and unsubscribing to the mailing lists. ------------------------------------------------------------------ PLEASE NOTE: The BIOSCI management does NOT act on subscription/unsubscription requests that are posted improperly to the newsgroups and mailing lists. People who do this only bother everyone on the lists to no avail. Please be sure to follow the proper procedures below. Gory details are in the BIOSCI Information sheets on the Web at http://www.bio.net. Below we give an example utilizing the METHODS-AND-REAGENTS list at both of our two BIOSCI sites: Users in the Americas and Pacific Rim countries who use the BIOSCI ------------------------------------------------------------------ node at computer net.bio.net: ---------------------------- A) Determine the "listname" which is the <=8 character mail address ^^^^^^^^^^^^^ for the group. These can be found in the BIOSCI Info. Sheet. For the METHODS-AND-REAGENTS group the mailing address is methods@net.bio.net. The listname is the portion of the address to the left of the @ sign, i.e., "methods". The listname is used with the "subscribe" and "unsubscribe" commands illustrated below. B) Mail all commands in the body of a mail message addressed to biosci-server@net.bio.net. Do NOT send commands to the newsgroup posting addresses! Leave the Subject: line blank, any text on it will be ignored. C) In the body of your message put one or more of the following commands with an "end" command on the last line, e.g., subscribe methods unsubscribe methods end Do NOT put your e-mail address or other text on these lines. The server only allows you to cancel your subscription if the address on your mail header matches the address on our mailing list. Please ask for help at biosci-help@net.bio.net if your address has changed, e.g., if you know you are on the list but the server tells you that you are not a member. Users in Europe, Africa, and Central Asia who use the BIOSCI node at -------------------------------------------------------------------- computer daresbury.ac.uk (also known as dl.ac.uk): ------------------------------------------------- To subscribe and unsubscribe to/from the BIOSCI lists, you need to specify the full USENET newsgroup name with "bionet-news." prepended. The USENET newsgroup names are listed in the BIOSCI Information sheet on the Web at http://www.bio.net/. For the METHODS-AND-REAGENTS list the USENET newsgroup name is bionet.molbio.methds-reagnts, thus the appropriate commands are sub bionet-news.bionet.molbio.methds-reagnts unsub bionet-news.bionet.molbio.methds-reagnts These commands are included in a message addressed to mxt@dl.ac.uk, NOT to the newsgroup mailing addresses. As usual, include the text in the body of the message as text on the Subject: line is ignored. To unsubscribe from all the lists at the UK node, use unsub bionet-news Please note that if the address in the list is different than the one in your mail message header, you will not be able to unsubscribe by this method. If you have problems, please mail biosci@daresbury.ac.uk. 4) The BIOSCI user address and research interest directory. ----------------------------------------------------------- Please take this opportunity to add your name, address, and research interest information to the BIOSCI User Address Database if you have not already done so. You can fill out the address form directly through our Web page at URL http://www.bio.net/adrform.html. The address database is reindexed nightly for WWW access (the URL is http://www.bio.net/). If you are not directly on the Internet but can reach it by e-mail, please use our waismail server to access the user directory. waismail use is described above. You can also request a user address form by e-mail from biosci-help@net.bio.net. Please check your database entry from time-to-time to see if your address information is still up-to-date. Because of our limited personnel resources, we ask that you resubmit a *complete* form to revise your entry; we only replace complete entries and do not have resources to edit old forms. From owner-srs@net.bio.net Wed Mar 18 22:00:00 1998 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!news.maxwell.syr.edu!newsfeed.ecrc.net!newsfeed.nacamar.de!news-kar1.dfn.de!news.embl-heidelberg.de!usenet From: Ramu Chenna Newsgroups: bionet.software.srs Subject: Add another html link to swissprot Date: 19 Mar 1998 14:37:00 GMT Organization: EMBL Heidelberg Lines: 25 Distribution: world Message-ID: <6eraic$ep0@lion.embl-heidelberg.de> NNTP-Posting-Host: shag.embl-heidelberg.de Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 1.12IS (X11; I; IRIX 5.3 IP22) X-URL: news:bionet.software.srs?ALL Hi everybody There are few swissprot entries ( BST1_HUMAN for quick check) which have www links in comment line. Add the following icarus lines to swissprot.is do make them clickable! h_cc: ~ {$In:[fields c:cc t:html]} (tag ('WWW="' href {$Rep:"$Ct"} | ln ))* ~ href: ~ /[^"]+/ ~ # Ramu -- _______________________________________________________________ Chenna Ramu; EMBL; Postfach 10.2209; 69012 Heidelberg; Germany. Email: chenna@embl-heidelberg.de Url: http://www.embl-heidelberg.de/~chenna/ Tel: (49) 6221 387530 (Off) ; Fax: (49) 6221 387517 ______ From owner-srs@net.bio.net Sat Mar 21 22:00:00 1998 Path: biosci!agate!logbridge.uoregon.edu!woodstock.news.demon.net!demon!news.demon.co.uk!demon!elwell.demon.co.uk!not-for-mail From: Andrew Elwell Newsgroups: bionet.software.srs Subject: Compiling srs5.1.0 under redhat linux 5.0 Date: Sun, 22 Mar 1998 01:34:04 +0000 Message-ID: <35146A8C.1F88D42C@udcf.gla.ac.uk> NNTP-Posting-Host: elwell.demon.co.uk X-NNTP-Posting-Host: elwell.demon.co.uk [158.152.124.140] X-Mailer: Mozilla 4.04 [en] (Win95; I) MIME-Version: 1.0 CC: andrew@elwell.demon.co.uk Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit Lines: 28 having set up SRS at work under slackware and irix, I decided to try on ly home linux box: during "./srsinstall all" I had lots of "warning: initialization makes integer from pointer without a cast" complaints until: gcc -I/usr/local/srs/bin/linux -o /usr/local/srs/bin/linux/nodd /usr/local/srs /bin/linux/nodd.o /usr/local/srs/bin/linux/local.o /usr/local/srs/bin/linux/libs rs.a -lm /usr/local/srs/bin/linux/libsrs.a(icadebug.o): In function `DbgIopStatement': icadebug.o(.text+0xaa): undefined reference to `TermNewLineEditor' icadebug.o(.text+0x123): undefined reference to `TermLineEdit' make: *** [/usr/local/srs/bin/linux/nodd] Error 1 srsmake: Stopping due to Error 2 srsinstall: Stopping due to Error 1 I assume (in my ignorance) that this might be due to glibc2 ? has anyone managed to get this to work (and could they give me a RPM :-)? Thanks Andrew From owner-srs@net.bio.net Sun Mar 22 22:00:00 1998 Path: biosci!agate!howland.erols.net!newsfeed.internetmci.com!193.174.75.126!news-was.dfn.de!news-kar1.dfn.de!news.embl-heidelberg.de!usenet From: Weare@EuropeMail.com (Johnathon Weare) Newsgroups: bionet.software.srs Subject: Re: Compiling srs5.1.0 under redhat linux 5.0 Date: 23 Mar 1998 11:42:36 +0100 Organization: Biocomputing, EMBL Heidelberg, Germany Lines: 36 Sender: weare@fifi.embl-heidelberg.de Distribution: world Message-ID: References: <35146A8C.1F88D42C@udcf.gla.ac.uk> NNTP-Posting-Host: fifi.embl-heidelberg.de Cc: Andrew Elwell Encryption-by: McWurst McWurst-Schluessel: O*Uef!$p&^afC1fe@0n--9`#gA||~[gf)*fcq26 X-Newsreader: Gnus v5.3/Emacs 19.34 >>>>> "A" == Andrew Elwell writes: A> having set up SRS at work under slackware and irix, I decided to try A> on ly home linux box: A> during "./srsinstall all" I had lots of "warning: initialization A> makes integer from pointer without a cast" A> complaints until: gcc -I/usr/local/srs/bin/linux -o A> /usr/local/srs/bin/linux/nodd /usr/local/srs /bin/linux/nodd.o A> /usr/local/srs/bin/linux/local.o /usr/local/srs/bin/linux/libs rs.a A> -lm /usr/local/srs/bin/linux/libsrs.a(icadebug.o): In function A> `DbgIopStatement': icadebug.o(.text+0xaa): undefined reference to A> `TermNewLineEditor' icadebug.o(.text+0x123): undefined reference to A> `TermLineEdit' make: *** [/usr/local/srs/bin/linux/nodd] Error 1 A> srsmake: Stopping due to Error 2 srsinstall: Stopping due to Error 1 A> I assume (in my ignorance) that this might be due to glibc2 ? A> has anyone managed to get this to work (and could they give me a RPM A> :-)? A> Thanks Andrew I'd guess at glibc too. If you disable the linux debugger code (for line editing) you're very likely to get a fully working SRS. After that - from what I've heard - you might like to checkout relevant fixes for your Redhat 5.0! Johnathon -- Johnathon Weare -- EMBL -- Weare@EuropeMail.com --- http://www.gpcr.org/johnny/ From owner-srs@net.bio.net Tue Mar 24 22:00:00 1998 Path: biosci!agate!news-spur1.maxwell.syr.edu!news.maxwell.syr.edu!nntp.news.xara.net!xara.net!server5.netnews.ja.net!server6.netnews.ja.net!singer.cent.gla.ac.uk!usenet From: Andrew Elwell Newsgroups: bionet.software.srs Subject: Compressed databases Date: Tue, 24 Mar 1998 17:19:24 +0000 Organization: Molecular Enzymology Group Lines: 13 Message-ID: <3517EB1C.BB6A03BE@udcf.gla.ac.uk> NNTP-Posting-Host: j5-coggins.ibls.gla.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 4.04 [en] (X11; I; Linux 2.0.32 i586) I see from the srs.relnotes that compressed databases can be used, how is this done? eg, I have /local/databases/swissprot/seq.dat.Z which .i file do I change? the srsgen.1 or the individual swissprot.i? Is anyone actively working on the documentation? and would they like a hand as it's eeerm, difficult at the moment.... Ta Andrew From owner-srs@net.bio.net Tue Mar 24 22:00:00 1998 Path: biosci!agate!news-spur1.maxwell.syr.edu!news.maxwell.syr.edu!nntp.news.xara.net!xara.net!server5.netnews.ja.net!server6.netnews.ja.net!singer.cent.gla.ac.uk!usenet From: Andrew Elwell Newsgroups: bionet.software.srs Subject: Compressed Databases Date: Tue, 24 Mar 1998 16:13:42 +0000 Organization: Molecular Enzymology Group Lines: 14 Message-ID: <3517DBB6.DBB5D0C2@udcf.gla.ac.uk> NNTP-Posting-Host: j5-coggins.ibls.gla.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 4.04 [en] (X11; I; Linux 2.0.32 i586) probably a FAQ, but: the srs.relnotes says that compressed databases can be used, How? I would like to keep the data (eg, swissprot: seq.dat) as seq.dat.Z on disk and run it through zcat to build the index. is this "the right way" to do it? if not, then how? i'm still trying to wade through the manuals - is there anyone working on improving readability (and do they want a hand?) Ta Andrew (who's still struggling to compile on redhat...) From owner-srs@net.bio.net Tue Mar 24 22:00:00 1998 Path: biosci!agate!nntp-out.monmouth.com!newspeer.monmouth.com!news.idt.net!newsfeed.internetmci.com!4.1.16.34!cpk-news-hub1.bbnplanet.com!news.bbnplanet.com!Cabal.CESspool!bofh.vszbr.cz!lyra.csx.cam.ac.uk!hgmp.mrc.ac.uk!not-for-mail From: "Thure Etzold" Newsgroups: bionet.software.srs Subject: Re: Compressed databases Date: Wed, 25 Mar 1998 12:50:00 -0000 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 28 Message-ID: <6fauiq$o8b$1@niobium.hgmp.mrc.ac.uk> References: <3517EB1C.BB6A03BE@udcf.gla.ac.uk> NNTP-Posting-Host: idefix.ebi.ac.uk X-Newsreader: Microsoft Outlook Express 4.71.1712.3 X-MimeOLE: Produced By Microsoft MimeOLE V4.71.1712.3 Andrew Elwell wrote in message <3517EB1C.BB6A03BE@udcf.gla.ac.uk>... >I see from the srs.relnotes that compressed databases can be used, how >is this done? > >eg, I have /local/databases/swissprot/seq.dat.Z > >which .i file do I change? the srsgen.1 or the individual swissprot.i? this works only with a 'per entry compression' and with 'one file per entry' databanks. Examples are pdb, hssp. The file seq.dat.Z for swissprot could be uncompressed on the fly for the indexing. But then for doing entry retrieval the whole seq.dat.Z needs to be uncompressed for accessing even a single entry. > >Is anyone actively working on the documentation? and would they like a >hand as it's eeerm, difficult at the moment.... Any input is very welcome. You could print out the manual, annotate it, eg, mark the passages that are not understandable and send it to us. regards thure From owner-srs@net.bio.net Tue Mar 31 23:00:00 1998 Path: biosci!organon.oss.akzonobel.nl!j.rullmann From: j.rullmann@organon.oss.akzonobel.nl (Ton Rullmann) Newsgroups: bionet.software.srs Subject: wgetz compilation problems? Date: 1 Apr 1998 07:16:56 -0800 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 16 Sender: daemon@net.bio.net Distribution: world Message-ID: <352259B5.6492F53A@organon.oss.akzonobel.nl> Reply-To: j.rullmann@organon.oss.akzonobel.nl NNTP-Posting-Host: net.bio.net Problem: I reinstalled the WWW server by running "./srsinstall www". Compilation appears normal, a wgetz binary is produced and copied to the www/bin directory. Only it does not run, and seems to wait (for input?). The install script does not finish (no index.html made), and typing "wgetz -help" at the command line gives no output. Previously all worked fine. I feel rather stupid. What is the problem? Thanks for your help, Ton. -- Dr. J.A.C. Rullmann, System Development Manager MDI-RIM group NV Organon, P.O. Box 20, Room RK2322, 5340 BH Oss, the Netherlands Phone: +31-412-661423 Fax: +31-412-662539 E-mail: j.rullmann@organon.oss.akzonobel.nl From owner-srs@net.bio.net Tue Mar 31 23:00:00 1998 Path: biosci!webtv.net!uunet!in1.uu.net!wnfeed!worldnet.att.net!207.172.3.49!feed2.news.erols.com!erols!newsfeed.direct.ca!Cabal.CESspool!bofh.vszbr.cz!lyra.csx.cam.ac.uk!hgmp.mrc.ac.uk!not-for-mail From: Heikki Lehvaslaiho Newsgroups: bionet.software.srs Subject: Re: Add another html link to swissprot Date: Wed, 01 Apr 1998 09:30:08 +0100 Organization: EMBL - EBI Lines: 46 Message-ID: <3521FB10.2FF975CA@ebi.ac.uk> References: <6eraic$ep0@lion.embl-heidelberg.de> NNTP-Posting-Host: cetus.ebi.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 4.03 [en] (X11; I; IRIX64 6.2 IP28) Ramu Chenna wrote: > > Hi everybody > > There are few swissprot entries ( BST1_HUMAN for quick check) > which have www links in comment line. > > Add the following icarus lines to swissprot.is do make them clickable! > > h_cc: ~ {$In:[fields c:cc t:html]} > (tag > ('WWW="' href {$Rep:"$Ct"} | ln ))* ~ > > href: ~ /[^"]+/ ~ > To enable hypertext links to more than one URL per CC line block and to include FTP URLs, you might want to use: h_cc: ~ {$In:[fields c:cc t:html]} (tag (('FTP="'| 'WWW="') /[^"]+/ {$Rep:{$ParStr:urlR $Ct $Ct}} ln | ln ))* ~ This production uses hypertext link definition 'urlR' which is in file srsdb.i: $href:[urlR link:"%s"] There are only four "FTP" links in current release of SWISS-PROT and all but one lack 'ftp://' string from the beginning (see BTK_HUMAN, Q06187). The SWISS-PROT annotators are fixing this now. -Heikki -- ______ _/ _/_____________________________________________________ _/ _/ http://www2.ebi.ac.uk/mutations/ _/ _/ _/ Heikki Lehvaslaiho heikki@ebi.ac.uk _/_/_/_/_/ EMBL Outstation, European Bioinformatics Institute _/ _/ _/ Wellcome Trust Genome Campus, Hinxton _/ _/ _/ Cambs. CB10 1SD, United Kingdom _/ Phone: +44 (0)1223 494 644 FAX: +44 (0)1223 494 468 ___ _/_/_/_/_/________________________________________________________