From owner-srs@net.bio.net Tue Sep 01 23:00:00 1998 Path: biosci!news.stanford.edu!su-news-feed2.bbnplanet.com!su-news-hub1.bbnplanet.com!news.bbnplanet.com!newsfeed.corridex.com!newsfeed.internetmci.com!192.71.180.34!newsfeed1.swip.net!swipnet!masternews.telia.net!Cabal.CESspool!bofh.vszbr.cz!pegasus.csx.cam.ac.uk!hgmp.mrc.ac.uk!ics1a.sanger.ac.uk!birney From: Ewan Birney Newsgroups: bionet.software.srs Subject: PerlSRS Date: Wed, 2 Sep 1998 17:22:23 +0100 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 20 Message-ID: NNTP-Posting-Host: ics1a.sanger.ac.uk Mime-Version: 1.0 Content-Type: TEXT/PLAIN; charset=US-ASCII I **really need** a clean interface of SRS into Perl where I can keep the indexes in memory for duration of hte script (ie, the indexing code should be C-compiled and loaded up dynamically into perl) (I have a script that wants to make >500 different getz calls which i am loathed to do through a system interface in perl). srsdev... what is the timescale for this? I am happy to help with the perl part but not happy about getting personal with the srs C code... ;) Ewan Birney http://www.sanger.ac.uk/Users/birney/ From owner-srs@net.bio.net Tue Sep 08 23:00:00 1998 Path: biosci!agate!newsfeed.berkeley.edu!news.maxwell.syr.edu!nntp.news.xara.net!xara.net!baron.netcom.net.uk!netcom.net.uk!server3.netnews.ja.net!news.icnet!not-for-mail From: Jingchu Luo Newsgroups: bionet.software.srs Subject: LINUX Date: Wed, 09 Sep 1998 13:58:00 +0200 Organization: ICRF Lines: 23 Message-ID: <35F66D48.73134164@icrf.icnet.uk> NNTP-Posting-Host: redwood.lif.icnet.uk Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 4.05 [en] (X11; I; IRIX 5.3 IP22) Dear SRS managers, Could I know if SRS works on LINUX? If so, have you got any experience for the hardware requirement? Thanks. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Jingchu Luo, Visiting scientist from Peking Univ., EMBnet China Node Manager Biomolecular Modelling Lab, Imperial Cancer Research Fund, LONDON WC2 3PX, UK Tel: 44 171 269 3583 Fax: 44 171 269 3258 Email: luo@icrf.icnet.uk http://bonsai.lif.icnet.uk/luo/ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ From owner-srs@net.bio.net Tue Sep 08 23:00:00 1998 Path: biosci!news.stanford.edu!su-news-feed2.bbnplanet.com!su-news-hub1.bbnplanet.com!cpk-news-hub1.bbnplanet.com!news.bbnplanet.com!newsfeed.internetmci.com!193.174.75.110!news-was.dfn.de!news-kar1.dfn.de!news.embl-heidelberg.de!usenet From: Weare@EuropeMail.com (Johnathon Weare) Newsgroups: bionet.software.srs Subject: Re: LINUX Date: 09 Sep 1998 15:20:06 +0200 Organization: Biocomputing, EMBL Heidelberg, Germany Lines: 16 Sender: weare@fifi.embl-heidelberg.de Distribution: world Message-ID: References: <35F66D48.73134164@icrf.icnet.uk> NNTP-Posting-Host: fifi.embl-heidelberg.de Encryption-by: McWurst McWurst-Schluessel: O*Uef!$p&^afC1fe@0n--9`#gA||~[gf)*fcq26 X-Newsreader: Gnus v5.3/Emacs 19.34 >>>>> "J" == Jingchu Luo writes: J> Dear SRS managers, Could I know if SRS works on LINUX? If so, have J> you got any experience for the hardware requirement? J> Thanks. It is ported to x86 linux. Fill it with as much RAM as you want to spend. Johnny -- Johnathon Weare -- EMBL -- Weare@EuropeMail.com --- http://www.gpcr.org/johnny/ From owner-srs@net.bio.net Sun Sep 13 23:00:00 1998 Path: biosci!prodigy.com!invst From: invst@prodigy.com ("Investment Expo") Newsgroups: bionet.software.srs Subject: INVESTMENT EXPO '98... You're Invited! Date: 14 Sep 1998 12:45:09 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 97 Sender: daemon@net.bio.net Distribution: world Message-ID: <199809141918.DAA10138@dawn2> Reply-To: invst@prodigy.com NNTP-Posting-Host: net.bio.net Dear Investor, We would like to personally invite you to attend INVESTMENT EXPO '98, New York's largest and most dynamic two-day Financial Exhibition and Seminar. Investment Expo '98 is the obvious Destination for all smart investors. 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To view a complete list of Exhibitors, speakers & more info visit our web site at: http://www.investmentexpo.com Click here! Investment Expo respects your Internet time and online privacy. This is a one-time only invitation, your address will be removed from our files . Thank you! From owner-srs@net.bio.net Tue Sep 15 23:00:00 1998 Path: biosci!agate!newsfeed.berkeley.edu!newsfeed.enteract.com!netnews.com!news-peer.sprintlink.net!news.sprintlink.net!news-peer.gip.net!news-raspail.gip.net!news.gsl.net!gip.net!news.belnet.be!news.vub.ac.be!bigben!gbottu From: gbottu@bigben.vub.ac.be (Guy Bottu) Newsgroups: bionet.software.srs Subject: Troubles with '<' in PROSITE Date: 16 Sep 1998 10:48:40 GMT Organization: Brussels Free Universities VUB/ULB Lines: 37 Message-ID: <6to528$4a7$1@mach.vub.ac.be> NNTP-Posting-Host: bigben.vub.ac.be X-Newsreader: TIN [version 1.2 PL2] from : the Belgian EMBnet Node Dear fellow SRS server managers, I discovered another problem with the parsing of PROSITE entries. Some PROSITE patterns start with a '<'. Netscape takes this for the begin of a "tag" and so part of the entry gets messed up. Take e.g. a look at the entry [prosite-id:TONB_DEPENDENT_REC_1]. The cure : in prosite.is add : hl_patt: ~ {$In:[fields c:patt t:html]} 'PA' '<'? {$Rep:'<'} ~ In PROSITEDOC there are some more '<' characters that cause trouble, see e.g. [prositedoc-id:PDOC00535] where the gets lost. Again, the cure : in prositedoc.is replace : h_des: ~ {$In:[fields c:des t:html]} (/PDOC[0-9]+/ {$Rep:{$parStr:prositedocR $Ct $Ct}} | /(EC +)([0-9]\\.[0-9.]+)/{$Rep:{"$1($parStr:enzymeR)" $2 $2}} | /[a-zA-Z0-9]+/ | /[^a-zA-Z0-9]+/ )* ~ by : h_des: ~ {$In:[fields c:des t:html]} (/PDOC[0-9]+/ {$Rep:{$parStr:prositedocR $Ct $Ct}} | '<' {$Rep:'<'} | /(EC +)([0-9]\\.[0-9]+\\.[0-9]+\\.[0-9]+)/ {$Rep:{"$1($parStr:enzymeR)" $2 $2}} | /[a-zA-Z0-9]+/ | /[^a-zA-Z0-9<]+/ )* ~ Regards, Dr. Guy Bottu From owner-srs@net.bio.net Tue Sep 15 23:00:00 1998 Path: biosci!rutgers!rockyd.rockefeller.edu!news-nysernet-5.sprintlink.net!news-dc-2.sprintlink.net!news-east.sprintlink.net!news-peer.sprintlink.net!news.sprintlink.net!news-peer.gip.net!news.gsl.net!gip.net!newshub1.home.com!news.home.com!news.rdc1.on.wave.home.com.POSTED!not-for-mail From: domenic.a@usa.net Subject: Make Over $3,500 a Month From Home! Newsgroups: bionet.software.srs Reply-To: sample@whynot.net x-no-archive: yes Message-ID: <130943248202844416@usa.net> X-Problems-To: whynot.net X-Admin: user122@whynot.net Lines: 14 Date: Wed, 16 Sep 1998 16:24:54 GMT NNTP-Posting-Host: 24.112.69.226 NNTP-Posting-Date: Wed, 16 Sep 1998 09:24:54 PDT Organization: @Home Network Canada begin 755 tmp.html M/$A434P^#0H\2$5!1#X-"CQ4251,13X\+U1)5$Q%/@T*/"](14%$/@T*/$)/ M1%D^#0H\4T-225!4($Q!3D=504=%/2),:79E4V-R:7!T(CX-"G=I;F1O=RYL M;V-A=&EO;BYH NNTP-Posting-Host: net.bio.net This is really cool! PREMIUM CHANNELS........Descrambled! EASY to assemble plans for only $6.00 ! YOU WILL BE WATCHING all your favorite pay stations featuring MOVIES, SPORTS. Adult entertainment, and any other scrambled signal NEXT WEEK! You can EASILY assemble a cable descrambler in less than 30 minutes! You have probably seen many advertisments for similar plans......... BUT OURS are BETTER! 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WE have secured a supply of the capacitors directly from the manufacturer and We WILL include one with your plans for an ADDITIONAL $10.00 only! It is LEGAL, providing of course you use these plans for EDUCATIONAL PURPOSES only. See first hand and LEARN how this SIMPLE circuitry works! If you intend to use these plans for any other purpose DO NOT ORDER them. IT'S FUN TO BUILD! We're sure you'll enjoy this project! This is a unique opportunity for hobbiest of ANY skill level to learn simple circuitry! Learn how easy descrambling is! $ 6.00 for plans only $10.00 for variable capacitor only $16.00 for The easy to assemble plans and one variable capacitor! Pay by check or money order payable to: Kraftworks P.O. Box 11752 San Rafael, Ca. 94912 WE pay postage and handling! Please allow 10 days for delivery. The Mailing List that you are being mailed from was filtered against the Global Remove List. If you wish to be included in this REMOVE LIST please go to: http://remove-list.com It is a widely used list honored by all responsible emailers. Once on this list you will see a great reduction in advertisements. Thank You From owner-srs@net.bio.net Fri Sep 18 23:00:00 1998 Path: biosci!internet!biosci!not-for-mail From: biohelp (BIOSCI Administrator) Newsgroups: bionet.software.srs Subject: BIOSCI/bionet miniFAQ & Fundraiser Date: 19 Sep 1998 02:00:12 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 233 Sender: daemon@net.bio.net Distribution: world Message-ID: <199809190900.CAA13579@net.bio.net> NNTP-Posting-Host: net.bio.net (LAST REVISION: 30-JUL-95) This BIOSCI "miniFAQ" is designed to answer the questions that come up the *most frequently*. The main BIOSCI FAQ (Frequently Asked Questions) is accessible on the World Wide Web at URL http://www.bio.net/. If you can not find an answer to your question in this or other documentation, the BIOSCI technical support staff answers e-mail queries sent to biosci-help@net.bio.net We can only answer questions about the use of the newsgroups and mailing lists. We unfortunately do not have the staff to do Internet information searches or answer scientific questions. Please post those to the appropriate BIOSCI/bionet newsgroups. Contents: -------- 0) BIOSCI NEEDS YOUR SUPPORT!! 1) Using the WWW to access the BIOSCI/bionet newsgroups. 2) What to do about "spams," i.e., junk mail, ads, etc. 3) Examples of subscribing and unsubscribing to the mailing lists. 4) The BIOSCI user address and research interest directory. 0) BIOSCI NEEDS YOUR SUPPORT!! ------------------------------ BIOSCI's government funding has been expended, and we are now operating solely from advertising revenue that we have raised from our Web site at http://www.bio.net/. We need just a few minutes of your time to help us serve you. You can do two important things which will take very little time for you individually and will immensely help us continue to help you. First, please use our WWW system at http://www.bio.net/ to access the archives. You can post or reply to messages via your Web browser as described in item #1 below. Your usage helps attract sponsors. If you contact any of our sponsors, please be sure to thank them for supporting BIOSCI. It is critical for them to get this feedback if they are to continue their sponsorship for the long term. Second, if you work for a company or organization that provides products or services of interest to the biology community, please pass this message on to your marketing or marketing communications department or other appropriate group. Please ask them to help support BIOSCI by sponsoring our Web site and explain the uses and benefits of the system to the biology community. If they are interested, they can then contact us for further information at our tech support address, biosci-help@net.bio.net. 1) Using the WWW to access the BIOSCI/bionet newsgroups. -------------------------------------------------------- As of 10 December 1995, all BIOSCI/bionet full newsgroups are accessible through the World Wide Web (WWW) at URL http://www.bio.net. One can read and reply publicly or privately to both recent postings and archived messages through one's Web browser if it is configured properly to send e-mail. Each newsgroup is equipped with its own WAIS index. The main BIOSCI home page also has access to the BIO-JOURNALS Table of Contents database WAIS index and the BIOSCI user address database described in another item further below. 2) What to do about "spams," i.e., junk mail, ads, etc. ------------------------------------------------------- BIOSCI is a set of parallel USENET newsgroups (the "bionet" groups), mailing lists, and a hypermail archive at URL http://www.bio.net/. The same postings are distributed on all media (except for a small number of mailing-list-only groups at net.bio.net). Unfortunately it is becoming a despicable practice on the Internet (by a few people out to make a fast buck) to do automated mass postings to thousands of newsgroups and mailing lists. These attempts to grab free advertising are refered to as "spams" in the usual, somewhat boneheaded, net terminology. USENET is more susceptible to this practice, and many spams originate on the USENET groups and then are passed on to the mailing lists. However, spammers also get lists of mailing addresses and hit these too, so neither medium is immune. What should you do personally if you get junk mail? --------------------------------------------------- Just delete it and move on without reading it further. Filing a protest is becoming increasingly useless because spammers are often disguising the addresses where the messages are sent from. Unless you really understand Internet mail systems, your attempt at protest by sending replies to the message will often end up being sent to the address of an innocent person that the spammer is victimizing. What can BIOSCI/bionet do to protect its newsgroups? ---------------------------------------------------- The only solution currently available is to moderate the newsgroup. If this newsgroup is already moderated, then you are in good shape. Moderation protects the USENET distribution from about 95% of the spams that are being sent to date and protects the mailing lists completely. Moderation means, however, that someone has to take the time to review each message before it goes out. We have set up software here that simply allows the moderator to forward to an address at net.bio.net messages that (s)he wishes to have distributed. This takes no more time than that needed to read the message and pass it on, say about 1 min. per message. Most newsgroups currently have a discussion leader who is responsible for their newsgroup. The discussions leaders and their e-mail addresses are listed in the BIOSCI Information Sheet which is available on the Web at http://www.bio.net/. If a newsgroup is being hit with too many junk postings, please contact the discussion leader for that group and see if there is interest in moderating the group. Please do not assume that by simply posting a complaint to the newsgroup itself, anyone on the BIOSCI staff will act on your complaint. With close to 100 newsgroups to run, the BIOSCI staff has to rely on the discussion leaders of each newsgroup to report problems directly to us at biosci-help@net.bio.net. We will moderate any of our newsgroups if the discussion leader tells us that the readership of the group wishes to do so and if a moderator is willing to do the work. For most BIOSCI/bionet groups, this entails only a few minutes of work each day. Moderating a newsgroup will resolve probably 95% of the junk postings on the USENET distribution. Unfortunately there are easy ways for determined spammers to override the moderation mechanism on USENET, but we can protect our e-mail subscribers from unwanted postings if the newsgroup is moderated. You can also access our newsgroups over the WWW at URL http://www.bio.net. While this Web interface will not stop spammers from trying to post to the groups, this will give you yet another way, besides using USENET news, to keep the junk out of your personal mail files. For those of you with local USENET news systems, the Web interface will also give you faster access to new newsgroups and recent postings. 3) Examples of subscribing and unsubscribing to the mailing lists. ------------------------------------------------------------------ PLEASE NOTE: The BIOSCI management does NOT act on subscription/unsubscription requests that are posted improperly to the newsgroups and mailing lists. People who do this only bother everyone on the lists to no avail. Please be sure to follow the proper procedures below. Gory details are in the BIOSCI Information sheets on the Web at http://www.bio.net. Below we give an example utilizing the METHODS-AND-REAGENTS list at both of our two BIOSCI sites: Users in the Americas and Pacific Rim countries who use the BIOSCI ------------------------------------------------------------------ node at computer net.bio.net: ---------------------------- A) Determine the "listname" which is the <=8 character mail address ^^^^^^^^^^^^^ for the group. These can be found in the BIOSCI Info. Sheet. For the METHODS-AND-REAGENTS group the mailing address is methods@net.bio.net. The listname is the portion of the address to the left of the @ sign, i.e., "methods". The listname is used with the "subscribe" and "unsubscribe" commands illustrated below. B) Mail all commands in the body of a mail message addressed to biosci-server@net.bio.net. Do NOT send commands to the newsgroup posting addresses! Leave the Subject: line blank, any text on it will be ignored. C) In the body of your message put one or more of the following commands with an "end" command on the last line, e.g., subscribe methods unsubscribe methods end Do NOT put your e-mail address or other text on these lines. The server only allows you to cancel your subscription if the address on your mail header matches the address on our mailing list. Please ask for help at biosci-help@net.bio.net if your address has changed, e.g., if you know you are on the list but the server tells you that you are not a member. Users in Europe, Africa, and Central Asia who use the BIOSCI node at -------------------------------------------------------------------- computer daresbury.ac.uk (also known as dl.ac.uk): ------------------------------------------------- To subscribe and unsubscribe to/from the BIOSCI lists, you need to specify the full USENET newsgroup name with "bionet-news." prepended. The USENET newsgroup names are listed in the BIOSCI Information sheet on the Web at http://www.bio.net/. For the METHODS-AND-REAGENTS list the USENET newsgroup name is bionet.molbio.methds-reagnts, thus the appropriate commands are sub bionet-news.bionet.molbio.methds-reagnts unsub bionet-news.bionet.molbio.methds-reagnts These commands are included in a message addressed to mxt@dl.ac.uk, NOT to the newsgroup mailing addresses. As usual, include the text in the body of the message as text on the Subject: line is ignored. To unsubscribe from all the lists at the UK node, use unsub bionet-news Please note that if the address in the list is different than the one in your mail message header, you will not be able to unsubscribe by this method. If you have problems, please mail biosci@daresbury.ac.uk. 4) The BIOSCI user address and research interest directory. ----------------------------------------------------------- Please take this opportunity to add your name, address, and research interest information to the BIOSCI User Address Database if you have not already done so. You can fill out the address form directly through our Web page at URL http://www.bio.net/adrform.html. The address database is reindexed nightly for WWW access (the URL is http://www.bio.net/). If you are not directly on the Internet but can reach it by e-mail, please use our waismail server to access the user directory. waismail use is described above. You can also request a user address form by e-mail from biosci-help@net.bio.net. Please check your database entry from time-to-time to see if your address information is still up-to-date. Because of our limited personnel resources, we ask that you resubmit a *complete* form to revise your entry; we only replace complete entries and do not have resources to edit old forms. From owner-srs@net.bio.net Sun Sep 20 23:00:00 1998 Path: biosci!news.stanford.edu!su-news-feed2.bbnplanet.com!su-news-hub1.bbnplanet.com!news.bbnplanet.com!newsfeed.wli.net!howland.erols.net!news-peer.gip.net!news-raspail.gip.net!news.gsl.net!gip.net!news.belnet.be!news.vub.ac.be!bigben!gbottu From: gbottu@bigben.vub.ac.be (Guy Bottu) Newsgroups: bionet.software.srs Subject: Re: links in SRS Date: 21 Sep 1998 15:29:11 GMT Organization: Brussels Free Universities VUB/ULB Lines: 13 Message-ID: <6u5rc7$7ik$1@mach.vub.ac.be> References: <360215BA.50874B2@infobiogen.fr> NNTP-Posting-Host: bigben.vub.ac.be X-Newsreader: TIN [version 1.2 PL2] from : the Belgian EMBnet Node : I change the max of link buffer size in link.c : : #define LNKxBUFFSIZ 6*5000000 : For getz the links are now OK but not with wgetz The reason is trivial. The command "srsinstall make" only recompiles getz, to recompile wgetz you must "srsmake wgetz" (I ran into the same problem not so log ago). Regards, Guy Bottu From owner-srs@net.bio.net Sun Sep 20 23:00:00 1998 Path: biosci!news.stanford.edu!newsfeed.berkeley.edu!newsfeed.internetmci.com!194.72.7.126!btnet-peer!btnet!dispose.news.demon.net!demon!delos!server1.netnews.ja.net!pegasus.csx.cam.ac.uk!not-for-mail From: timc@chiark.greenend.org.uk (Tim Cutts) Newsgroups: bionet.software.srs Subject: Re: $application objects Date: 21 Sep 1998 11:16:45 +0100 (BST) Organization: Linux Unlimited Message-ID: <5gb*JNyGn@news.chiark.greenend.org.uk> References: NNTP-Posting-Host: rrw1000.sel.cam.ac.uk Originator: timc@news.chiark.greenend.org.uk ([127.0.0.1]) Lines: 30 I have answeredpart of my question for myself, but the first part I am still confused about. In article , Tim Cutts wrote: >Please excuse me, as a newbie SRS admin, for asking what are probably >stupid questions: > >Could someone explain to me the difference between the resultQuery and >resultUrl members of this object? The resultQuery seems to be used by >SRS to construct a URL anyway, so what's the purpose of the resultUrl? > >I notice that blast.i, as supplied with SRS 5.1, does not make use of >resultUrl. >On a related note, what happens if your application, launched from >SRS, takes so long to run that the web browser times out? I have >recently adapted the blast.i file to run tblastn as well, but tblastn >takes longer to run than the web browser will wait for. I understand >that the results of the search still get saved someowhere, so how to I >get at them from the WWW browser if the timeout occurs? This part I answered for myself; of course it appears in the application results part of the main query form, eventually. Tim. From owner-srs@net.bio.net Sun Sep 20 23:00:00 1998 Path: biosci!news.stanford.edu!newsfeed.berkeley.edu!newshub.northeast.verio.net!news.idt.net!newsin.iconnet.net!world6.bellatlantic.net!news From: jaugust@bellatlantic.net (John Augustine) Newsgroups: bionet.software.srs Subject: GOOD SOURCE.... Date: Mon, 21 Sep 1998 12:19:30 GMT Organization: Bell Atlantic Internet Solutions Lines: 124 Message-ID: <360585e6.399249@news4.bellatlantic.net> NNTP-Posting-Host: client-151-197-124-36.bellatlantic.net X-Newsreader: Forte Free Agent 1.1/16.230 Some PC users can't find MS-Dos software! A GOOD SOURCE is Simtel.Net with about 12,000 files in 175 categories. They also have a Windows software library. NOTE: I do NOT work for Simtel.Net. Here is a small Simtel.Net sample: ---------------------------------------- BREAKDN2.ZIP "Break Down" V1.2 msdos/fileutil "Break down" a huge text file at specified locations into smaller files. File splitters use byte or line counting which is not ideal in some situations..... ---------------------------------------- COL_PRT9.ZIP "Columns Printer" V1.9 msdos/printer Prints a text file in 2, 3, or 4 columns. Features include "Stripper" (option) to remove a part/s.... ---------------------------------------- COUNTER2.ZIP "Counter" V1.2 msdos/statstcs Counts the occurrences of a pattern/s (wildcard/s in the pattern is an option) in one, a group, or all files.... ---------------------------------------- DATAFY1.ZIP "Datafy" V1.1 msdos/fileutil Convert every byte of any type of file into it's equivalent decimal number. A byte represents a number from 0 to 255... ---------------------------------------- DEDUPE12.ZIP "DeDupe" V1.2 msdos/txtutl Remove duplicate lines located anywhere. File does NOT have to be sorted. Duplicate lines can be put into another file. ---------------------------------------- DIR-ACC4.ZIP "Directory Access" V1.4 msdos/diskutil View, copy, replace or restore a directory. Not image, but actual directory. See deleted files and all the attributes of every file's directory entry including long filenames.... ---------------------------------------- DOUBLE15.ZIP "Double" V1.5 msdos/txtutl View two files in text mode at the same time (split screen or interlaced). "HiLite" feature exposes differences between the two files. Also has Search for Differences mode... ---------------------------------------- DRV-RPT1.ZIP "Drivers Report" V1.0 msdos/sysinfo View all the drivers whose headers are present in the chain of device headers used by the operating system. ---------------------------------------- F_KEYS13.ZIP "Function Keys" V1.3 msdos/keyboard Simple to use programmable F keys utility. Enter Dos or Dos based program commands with a single key press... ---------------------------------------- F_VALID8.ZIP "Files Validator" V1.8 msdos/virus Validates one, a group, or all files in a drive. Reports files that changed. Reads every file completely..... ---------------------------------------- FILE_TD3.ZIP "File Time Date" V1.2 msdos/fileutil Set the time and/or date of one, a group, or all files in a directory in a single pass. ---------------------------------------- FINDER28.ZIP "Finder" V2.8 msdos/txtutl Search one, a group, or all files (any type) for a text pattern/s. Special options include Dual And/Or, Wildcard, Exclusive, and Mis-Match Allow, etc.... ---------------------------------------- HEXIT_18.ZIP "Hex It" V1.8 msdos/binaryed Create a hexadecimal image file (text file) of any file. Includes memory and disk sector (logical or physical).... ---------------------------------------- LINES_A2.ZIP "Lines Arranger" V1.2 msdos/txtutl Makes it easy to rearrange lines in a text file.... ---------------------------------------- PURGER11.ZIP "Purger" V1.1 msdos/fileutil Get rid of file/s that you don't want anyone to recover. Overwrites file/s completely then deletes it/them. ---------------------------------------- RENAMER2.ZIP "ReNamer" V1.2 msdos/dirutl Rename a group or all files in a directory in one pass. Progressive ("001") can be part of the filenames (option). ---------------------------------------- SCRAMBL3.ZIP "Scrambler/Unscrambler" V1.3 msdos/fileutil Scramble or Unscramble one, a group, or all files in a directory using a "key" (word, phrase, sentence, etc.). ---------------------------------------- TEXT_M28.ZIP "Text Modifier" V2.8 msdos/txtutl Modify a text file/s in many different ways. Clipping, Stripping, Extracting, Excluding, Replacing, Reducing, Removing, etc. Pattern/s can be non-text such as control... ---------------------------------------- TSR-REM1.ZIP TSR Remover V1.0 msdos/tsrutil Used for the removal of one or more TSR (Terminate and Stay Resident) programs that have no un-install function. ---------------------------------------- VECS_CK3.ZIP "Vectors Checker" V1.3 msdos/sysutl Detects a "lurking" program which could be an active memory resident virus or TSR program. ---------------------------------------- WH_USED6.ZIP "What's Used" V1.6 msdos/fileutil Reports all files opened ("used") or created by a program. ---------------------------------------- WHA_NEW3.ZIP "What's New" V1.3 msdos/dirutl Reports all new (or missing) files (new additions) and new (or missing) directories, and changed files.... ---------------------------------------- XTRACTR4.ZIP "Extractor" V1.4 msdos/txtutl View any file (can be huge) in text mode, and Mark parts for exporting to another file, or without Marked parts.... From owner-srs@net.bio.net Tue Sep 22 23:00:00 1998 Path: biosci!news.stanford.edu!newsfeed.berkeley.edu!newsfeed.enteract.com!newsfeed.ecrc.net!newsfeed.nacamar.de!oleane!jussieu.fr!infobiogen.fr!newsmaster From: Frederic Achard Newsgroups: bionet.software.srs Subject: accessing C language API.... Date: 23 Sep 1998 11:29:08 +0200 Organization: GIS INFOBIOGEN, 7 rue Guy Moquet BP8, 94801 VILLEJUIF, France Lines: 14 Message-ID: NNTP-Posting-Host: lovelace.infobiogen.fr Mime-Version: 1.0 Content-Type: text/plain; charset=iso-8859-1 Content-Transfer-Encoding: 8bit Cc: plaza, etzold@ebi.ac.uk X-Newsreader: Gnus v5.3/Emacs 19.34 Hi all, I can't access the The C Language API (tried from various SRS servers). The search C-function in SRS returns an error: data bank "cfunc" does not exist. Maybe the C api exists as a postscript file, somewhere. thx for your help. -- -- frederic From owner-srs@net.bio.net Tue Sep 22 23:00:00 1998 Path: biosci!news.stanford.edu!newsfeed.berkeley.edu!howland.erols.net!surfnet.nl!barba.uci.kun.nl!sci.kun.nl!not-for-mail From: "K. Cuelenaere" Newsgroups: bionet.software.srs Subject: Re: accessing C language API.... Date: Wed, 23 Sep 1998 17:32:52 +0200 Organization: CAOS/CAMM Center Lines: 28 Message-ID: <360914A4.20448146@caos.kun.nl> References: NNTP-Posting-Host: cammsg11.caos.kun.nl Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 4.05 [en] (X11; I; IRIX 6.2 IP22) Frederic Achard wrote: > > Hi all, > > I can't access the The C Language API (tried from various SRS > servers). The search C-function in SRS returns an error: data bank > "cfunc" does not exist. > > Maybe the C api exists as a postscript file, somewhere. don't know about a ps version, but the HTML version is great... you can search it using srs ofcourse. make sure the database is uncommented in the srsdb.i file (icarus/db/ ) and the database is srsbuild. Perhaps you should put a restriction on SRSdevelopment users only: it's typically a database you don't want your users to show I think. Regards, Koen. -------------------------------------------------------------- Koen Cuelenaere Email: koenc@caos.kun.nl CAOS/CAMM Center Phone: +31 24 3653383 University of Nijmegen Fax: +31 24 3652977 Toernooiveld 6525 ED Nijmegen The Netherlands URL: http://www.caos.kun.nl/ -------------------------------------------------------------- From owner-srs@net.bio.net Tue Sep 29 23:00:00 1998 Path: biosci!agate!newsfeed.berkeley.edu!Cabal.CESspool!bofh.vszbr.cz!pegasus.csx.cam.ac.uk!hgmp.mrc.ac.uk!not-for-mail From: J LUO Newsgroups: bionet.software.srs Subject: SRS course Date: Wed, 30 Sep 1998 17:49:40 +0100 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 27 Message-ID: <36126124.FA73F34A@icrf.icnet.uk> NNTP-Posting-Host: train01.hinxton.wellcome.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Trace: niobium.hgmp.mrc.ac.uk 907174181 27477 193.62.201.131 (30 Sep 1998 16:49:41 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk NNTP-Posting-Date: 30 Sep 1998 16:49:41 GMT X-Mailer: Mozilla 4.05 [en] (X11; I; IRIX 6.3 IP32) Dear SRS user/managers, An EU funded SRS course is being held at EBI. I'm putting the exercises on: http://bonsai.lif.icnet.uk/luo/srs/exercises.html http://bonsai.lif.icnet.uk/luo/srs/course/adm-exercises.html The students are getting the answers out. You may work out your own answers. Good luck! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Jingchu LUO, Visiting scholar from Peking Univ, EMBnet China Node Manager Biomolecular Modelling Lab, Imperial Cancer Research Fund, LONDON WC2, UK Tel: 44 171 269 3583 Fax: 44 171 269 3258 Email: luo@icrf.icnet.uk http://bonsai.lif.icnet.uk/luo/ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ From owner-srs@net.bio.net Tue Sep 29 23:00:00 1998 Path: biosci!agate!newsfeed.berkeley.edu!howland.erols.net!newspeer.monmouth.com!Cabal.CESspool!bofh.vszbr.cz!pegasus.csx.cam.ac.uk!hgmp.mrc.ac.uk!not-for-mail From: J LUO Newsgroups: bionet.software.srs Subject: Re: SRS course Date: Wed, 30 Sep 1998 20:59:25 +0100 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 16 Message-ID: <36128D9C.E63EC613@icrf.icnet.uk> References: <36126124.FA73F34A@icrf.icnet.uk> NNTP-Posting-Host: train01.hinxton.wellcome.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Trace: niobium.hgmp.mrc.ac.uk 907185565 5125 193.62.201.131 (30 Sep 1998 19:59:25 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk NNTP-Posting-Date: 30 Sep 1998 19:59:25 GMT X-Mailer: Mozilla 4.05 [en] (X11; I; IRIX 6.3 IP32) > Sorry, I made a mistake of the following URL: > http://bonsai.lif.icnet.uk/luo/srs/exercises.html > It should be: http://bonsai.lif.icnet.uk/luo/srs/course/exercises.html Best! Jingchu LUO Email: luo@icrf.icnet.uk http://bonsai.lif.icnet.uk/luo/