From owner-bio-srs@hgmp.mrc.ac.uk Wed Dec 1 09:05:57 1999 Return-Path: Delivered-To: bio-srs-archive@hgmp.mrc.ac.uk Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id B4AA817A5C; Wed, 1 Dec 1999 09:05:56 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id JAA13247 for ; Wed, 1 Dec 1999 09:05:54 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id JAA26780 for bio-srs-list@hgmp.mrc.ac.uk; Wed, 1 Dec 1999 09:05:53 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: Peter Rice X-Newsgroups: bionet.software.srs Subject: Re: Bio-Mirrors for SRS data sets Date: 01 Dec 1999 09:06:29 +0000 Organization: The Sanger Centre Lines: 20 Message-ID: References: <8216c4$29s$1@flotsam.uits.indiana.edu> X-Trace: niobium.hgmp.mrc.ac.uk 944039152 26418 193.60.84.160 (1 Dec 1999 09:05:52 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk X-Newsreader: Gnus v5.5/Emacs 20.3 To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk gilbertd@bio.indiana.edu (Don Gilbert) writes: > Tim Littlejohn suggested we add SRS indices to the Bio-Mirror set, > to allow folks to copy them rather than run SRS build jobs locally. > That sounds like it could be useful. Does anyone have comments? Needs care in maintaining the Icarus files, which can diverge between sites (locations of additional field definitions an database links for example) because the .i and .is fields must match the database indices. I regularly pick up the EMBL indices from EBI, though they have a known problem with the embl_acc index for multiple AC lines so I had to rebuild that myself for the last couple of releases. -- ---------------------------------------------------------------------- Peter Rice | Informatics Division, The Sanger Centre, E-mail: pmr@sanger.ac.uk | Wellcome Trust Genome Campus, Tel: (44) 1223 494967 | Hinxton, Cambridge, CB10 1SA, England Fax: (44) 1223 494919 | URL: http://www.sanger.ac.uk/Users/pmr/ From owner-bio-srs@hgmp.mrc.ac.uk Wed Dec 1 20:35:27 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 4718B17A5D; Wed, 1 Dec 1999 20:35:26 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id UAA07567 for ; Wed, 1 Dec 1999 20:35:24 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id UAA05704 for bio-srs-list@hgmp.mrc.ac.uk; Wed, 1 Dec 1999 20:35:23 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: hzzay@PANACOM.COM X-Newsgroups: bionet.software.srs Subject: 2000 How to Books Date: 1 Dec 1999 08:46:37 -0800 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 60 Distribution: world Message-ID: <19991201144412.CAFF24E08@smtp.popsite.net> To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk HELLO: THIS IS AN ADVERTISEMENT FOR THE PUBLISHERS CD-ROM, IF YOU HAVE NO INTEREST IN THIS INFORMATION, PLEASE CLICK DELETE. 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From owner-bio-srs@hgmp.mrc.ac.uk Thu Dec 2 05:35:17 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 84E5217A5C; Thu, 2 Dec 1999 05:35:17 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id FAA09511 for ; Thu, 2 Dec 1999 05:35:12 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id FAA20369 for bio-srs-list@hgmp.mrc.ac.uk; Thu, 2 Dec 1999 05:35:11 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: Jingchu Luo X-Newsgroups: bionet.software.srs Subject: Re: Bio-Mirrors for SRS data sets Date: Thu, 02 Dec 1999 13:35:11 +0800 Organization: CBI, PKU Lines: 14 Message-ID: <3846050F.23E7ABB8@lsc.pku.edu.cn> References: <8216c4$29s$1@flotsam.uits.indiana.edu> Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Trace: sunlight.pku.edu.cn 944113116 22051 162.105.172.20 (2 Dec 1999 05:38:36 GMT) X-Complaints-To: postmaster@pku.edu.cn X-Mailer: Mozilla 4.51 [en] (X11; I; Linux 2.2.5-15 i686) X-Accept-Language: en To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Peter Rice wrote: > > Needs care in maintaining the Icarus files, which can diverge between > sites (locations of additional field definitions an database links for > example) because the .i and .is fields must match the database indices. Not only the Icarus files are very diverse, but also the number of databases, the version of database, the built-in programs installed in each site are also very diverse. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Jingchu Luo, Associate Professor, EMBNet China Node Manager College of Life Sciences, Peking University, Beijing 100871, China Tel: 86-10-62755206 Fax: 86-10-62751843 Email: luojc@lsc.pku.edu.cn From owner-bio-srs@hgmp.mrc.ac.uk Thu Dec 2 09:05:42 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 6F10D17A5C; Thu, 2 Dec 1999 09:05:41 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id JAA16622 for ; Thu, 2 Dec 1999 09:05:39 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id JAA22789 for bio-srs-list@hgmp.mrc.ac.uk; Thu, 2 Dec 1999 09:05:38 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: gilbertd@bio.indiana.edu (Don Gilbert) X-Newsgroups: bionet.software.srs Subject: Re: Bio-Mirrors for SRS data sets Date: 2 Dec 1999 09:05:34 GMT Organization: Biology, Indiana University - Bloomington Lines: 12 Message-ID: <825cou$g50$1@flotsam.uits.indiana.edu> References: <8216c4$29s$1@flotsam.uits.indiana.edu> <3846050F.23E7ABB8@lsc.pku.edu.cn> To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk One of the hopes for this Bio-Mirror project is to reduce some of the diversity in the same database at different sites (e.g., EMBL indexed here should be the same as EMBL indexed there.), by promoting rapid sharing of the same data, and for that case, I think sharing of the indices for SRS and the icarus files for a given databank would work. - Don -- -- d.gilbert--bioinformatics--indiana-u--bloomington-in-47405 -- gilbertd@bio.indiana.edu From owner-bio-srs@hgmp.mrc.ac.uk Fri Dec 3 01:49:24 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 6558117A43; Fri, 3 Dec 1999 01:49:24 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id BAA27702; Fri, 3 Dec 1999 01:49:19 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id BAA14205; Fri, 3 Dec 1999 01:49:18 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: "«Â·G®a±Ú" X-Newsgroups: bionet.software.srs,bionet.software.staden,tw.bbs.alumni.hsinchuang,tw.bbs.alumni.hsntnu,tw.bbs.alumni.hwachyau,tw.bbs.alumni.ilanhs,tw.bbs.sci.biology,tw.bbs.sci.chemical,tw.bbs.sci.chemistry,tw.bbs.sci.design,tw.bbs.sci.destiny-prediction,tw. Subject: Åý§Aªººô¯¸§ó¦h¤H¤W¥h Date: Thu, 2 Dec 1999 14:25:30 +0800 Organization: DCI HiNet Message-ID: <8252ig$q5e@netnews.hinet.net> References: <01bf3881$394dcd40$LocalHost@name.is.net.tw> X-Priority: 3 X-MSMail-Priority: Normal X-Newsreader: Microsoft Outlook Express 5.00.2314.1300 X-MimeOLE: Produced By Microsoft MimeOLE V5.00.2314.1300 Lines: 9 To: bio-srs@hgmp.mrc.ac.uk, staden@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Åý§Aªººô¯¸§ó¦h¤H¤W¥h ~~~~~~~~~~~~§K¶OÀ°±z¥Zµn¼s§i!!!§K¶O³á!!!~~~~~~~~~~~~ ±z¦³ºô¯¸¶Ü? ¨D¨D±z~~~~~§Ú¥i¥H©M±z¤¬¬Û¥æ´«³s±µºô¯¸¶Ü? http://djwilliam.members.easyspace.com/ From owner-bio-srs@hgmp.mrc.ac.uk Fri Dec 3 14:31:32 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 36CCD17A43; Fri, 3 Dec 1999 14:31:31 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id OAA13531 for ; Fri, 3 Dec 1999 14:31:29 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id OAA23333 for bio-srs-list@hgmp.mrc.ac.uk; Fri, 3 Dec 1999 14:31:27 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: Peter Stoehr X-Newsgroups: bionet.software.srs Subject: Re: Problems with number of results: SRS-EBI compared to SRS-DDBJ Date: Fri, 03 Dec 1999 14:31:27 +0000 Organization: EMBL-EBI Lines: 30 Message-ID: <3847D43F.F41687D1@ebi.ac.uk> References: <3842C2F3.E71CD0C2@informatik.uni-bremen.de> Mime-Version: 1.0 Content-Type: text/plain; charset=iso-8859-1 Content-Transfer-Encoding: 8bit X-Trace: niobium.hgmp.mrc.ac.uk 944231487 23330 193.62.196.237 (3 Dec 1999 14:31:27 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk X-Mailer: Mozilla 4.7 [en] (WinNT; I) X-Accept-Language: en To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Thomas, The lastest EMBL release 60, which is what we and other SRS servers will have was dated September 3. Genbank's last release was October 11. There were some 579 new hepatitis c virus sequences between 4-SEP-1999 and 12-OCT-1999 in EMBLNEW. I think that explains the difference. Regards, Peter Stoehr EMBL-EBI Thomas Schäfer wrote: > > Dear colleagues, > > I started two queries, the first using SRS at EBI, the second > using SRS at DDBJ. The query string was "Hepatitis c virus", and > I tried it with the "ALL"-fields option as well as with "ORGANISM" > as the only field to be searched. > EBI-SRS found 6513 entries (11/29/99), and DDBJ-SRS found 7084 (same > date). Looking at the Taxonomy Browser (NCBI) the query for "hcv" > (which is given as an example query, also) results in 7084 entries > as the DDBJ-SRS. > > Why doesn't EBI-SRS find the same number of entries? I thought > that EMBL, DDBJ and GenBank where (almost) the same. > > Thank you very much for help, > Thomas Schaefer, University of Bremen From owner-bio-srs@hgmp.mrc.ac.uk Sat Dec 4 00:15:16 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 32D4D17A56; Sat, 4 Dec 1999 00:15:14 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id AAA23055 for ; Sat, 4 Dec 1999 00:15:13 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id AAA08791 for bio-srs-list@hgmp.mrc.ac.uk; Sat, 4 Dec 1999 00:15:11 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: "Burluth Enterprises" X-Newsgroups: bionet.software.srs Subject: Y2K T-SHIRTS Date: Fri, 3 Dec 1999 17:12:47 -0700 Lines: 13 X-Newsreader: Microsoft Outlook Express 4.72.3110.1 X-MimeOLE: Produced By Microsoft MimeOLE V4.72.3110.3 Message-ID: <38485c32_7@news.newsfeeds.com> X-Trace: 3 Dec 1999 18:11:30 -0600, 216.146.167.99 X-Authenticated-User: rambo_boy X-Report: Report abuse to abuse@newsfeeds.com X-Abuse-Info: Please be sure to forward a copy of ALL headers, INCLUDING the body X-Abuse-Info2: ALL Spam complaints are acted upon within 24 hours! Organization: Newsfeeds.com http://www.newsfeeds.com 73,000+ UNCENSORED Newsgroups. To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Please pardon us if this is an off-topic post, but due to the unique nature of these y2k related t-shirts, we thought you would like to know. The t-shirts we have available right now, will be funny (or serious) to certain groups. Although they are for everyone, typically the computer buff type people will find them the most amusing. Stop by and check out what we have right now. 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DHD87-28I28-29 From owner-bio-srs@hgmp.mrc.ac.uk Sun Dec 12 12:20:07 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 9F44F17A58; Sun, 12 Dec 1999 12:20:06 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id MAA11330 for ; Sun, 12 Dec 1999 12:20:05 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id MAA16113 for bio-srs-list@hgmp.mrc.ac.uk; Sun, 12 Dec 1999 12:20:04 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: lie75@goose.bitecomm.co.uk (lsmirld) X-Newsgroups: bionet.software.srs Subject: ADV:.Free..Gift -- aging, wight-loss, energy Date: 12 Dec 1999 12:20:03 -0000 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 120 Message-ID: <19991211360RAA33735@bsiumer.zoo.ru> X-Trace: niobium.hgmp.mrc.ac.uk 945001203 16111 193.62.192.80 (12 Dec 1999 12:20:03 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk X-Received: from museum.ru (www.museum.ru [195.208.39.1]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id MAA11317 for ; Sun, 12 Dec 1999 12:19:58 GMT X-Received: from zoo.ru [195.208.39.20] by museum.ru [195.208.39.1] with SMTP (MDaemon.v2.8.5.0.R) for ; Sat, 11 Dec 1999 11:52:00 +0300 X-Received: from Default by zoo.ru with SMTP (MDaemon.v2.7.SP4.R) for ; Sat, 11 Dec 1999 11:53:16 +0300 X-To: lie75@goose.bitecomm.co.uk X-Comments: Authenticated sender is X-MDaemon-Deliver-To: bio-srs@net.bio.net X-Return-Path: lie75@goose.bitecomm.co.uk To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk To be removed, send an email to werto90@bigfoot.com and in the subject and message field put the word "delete". 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Express CARD#: EXPRIRATION: BILLING ADDRESS: SIGNATURE: ----------------DOC58618531------------- - ' - --- From owner-bio-srs@hgmp.mrc.ac.uk Tue Dec 14 11:41:46 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 5DA7917B86; Tue, 14 Dec 1999 11:41:45 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id LAA02542 for ; Tue, 14 Dec 1999 11:41:43 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id LAA07293 for bio-srs-list@hgmp.mrc.ac.uk; Tue, 14 Dec 1999 11:41:42 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: kble__@juno.com X-Newsgroups: bionet.software.srs Subject: adv: Cable Descrambler Plans Date: 14 Dec 1999 11:41:41 -0000 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 99 Message-ID: <9912131719.AA08413@csppl.chungbuk.ac.kr> X-Trace: niobium.hgmp.mrc.ac.uk 945171701 7291 193.62.192.80 (14 Dec 1999 11:41:41 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk X-Received: from csppl.chungbuk.ac.kr ([210.115.167.93]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with SMTP id LAA02466; Tue, 14 Dec 1999 11:41:18 GMT X-Received: by csppl.chungbuk.ac.kr id AA08413; Tue, 14 Dec 1999 02:19:39 +0900 X-Received: from kble@juno.com by (8.8.5/8.6.5) with SMTP id GAA09795 for <>; Mon, 13 Dec 1999 10:25:52 -0600 (EST) X-To: Friend@public.com X-Reply-To: kble@juno.com To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk NOTE: THIS IS AN ADVERTISEMENT FOR CABLE TV DESCRAMBLER IF YOU HAVE NO INTEREST IN THIS INFORMATION PLEASE CLICK DELETE NOW. ARE TO BE REMOVED FROM FUTURE MAILINGS FOLLOW THE DIRECTIONS AT THE END OF MESSAGE THANK YOU- ========================================================================= CABLE TV DE-SCRAMBLER Want to watch Sporting Events?--Movies?--Pay-Per-View?? *This is the Famous R-D-O Shack TV Descrambler You can assemble it from R-D-O Shack parts for about $12.00. We Send You: E-Z To follow Assembly Instructions. E-Z TO read Original Drawings. The Famous R-D-O Shack Parts List. PLUS SOMETHING NEW YOU MUST HAVE! Something you can't do without. THE UP-TO-DATE REPORT:USING A DESCRAMBLER LEGALLY Warning:You should not build a TV Descrambler without reading this report first. Frequently Asked Questions--CABLE TV DESCRAMBLER Q: Will a descrambler work on a Fiber,TCI,Jarrod and satellite system? A: The answer is Yes. In respect to satellite, you just get more stuff! There is one exception: The descrambler will not work with DSS satillite. Q: Do I need a converter box? 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If you would like to be removed from our mailing list please put remove in the subject line lucy7777@dcemail.com --- From owner-bio-srs@hgmp.mrc.ac.uk Tue Dec 14 14:06:22 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id C492D17B21; Tue, 14 Dec 1999 14:06:21 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id OAA24609 for ; Tue, 14 Dec 1999 14:06:18 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id OAA09255 for bio-srs-list@hgmp.mrc.ac.uk; Tue, 14 Dec 1999 14:06:16 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: paolo@risc220.ist.unige.it (Paolo Romano) X-Newsgroups: bionet.software.srs Subject: missing user.par file Date: 14 Dec 1999 14:06:15 -0000 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 73 Message-ID: <199912141404.PAA17079@risc220.ist.unige.it> Content-Type: text X-Trace: niobium.hgmp.mrc.ac.uk 945180376 9253 193.62.192.80 (14 Dec 1999 14:06:16 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk X-Received: from risc220.ist.unige.it (risc220.ist.unige.it [130.251.106.99]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id OAA24574 for ; Tue, 14 Dec 1999 14:06:09 GMT X-Received: (from paolo@localhost) by risc220.ist.unige.it (8.9.3/8.9.3) id PAA17079 for bio-srs@hgmp.mrc.ac.uk; Tue, 14 Dec 1999 15:04:48 +0100 X-To: bio-srs@dl.ac.uk X-Mailer: ELM [version 2.4 PL23alpha2] To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Hello everybody, I have a problem with an SRS implementation on a Linux box and would like to have the advice of this precious list. The problem relates to a peculiar implementation of SRS that uses an ad hoc interface to query the databanks. Essentially, the interface behaves as follows: - databanks to be queried and terms to be searched are posted by using a standard HTML form. The same form is used by end users to specify if a preliminar search within a set of dbs of synonyms is to be carried out - the action that is associated to the form launch a perl script that: i) checks if a search through synonyms is requested, ii) possibly call getz for carrying out the synonyms search, iii) combine the results of the preliminar search with the original search terms, iv) call wgetz with the combined data and v) return the output of wgetz to the end user. The script is currently working ok with perl 5.005 + perl modules HTTP.pm and URI.pm on a Solaris box, an IBM RISC machine running AIX and a Dec Alpha workstation. We are having a (maybe silly) problem on a Linux machine: here are the symptoms. When a search is performed by using the standard SRS interface, everything is ok. When a search is carried out through the above perl script, it displays the right results, but it is not possible to reach the single entries by clicking on their ids because the temporary directory is empty. In other words, the user.par file that is normally created in the user session directory is missing... I understand that the user.par file is created by wgetz. So, my final question to you all is the following: in which conditions, on a Linux box, it can happen (or happened) that the user.par file is not created? I know there are many possible causes that do not relate to SRS. E.g., wrong perl modules that are badly managing passing of parameters to wgetz. But if you have any ideas, you are welcome to tell me! And of course you are welcome to see it all in action at the following url: http://www.cabri.org/CABRI/cabri-srs-doc/cabrisearch.html A more general overview of the system is available at: http://www.cabri.org/ Thank you in advance for any hints and suggestions. Ciao. Paolo Romano -- # * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * # This message comes from Paolo Romano vi ha inviato questo messaggio Biotechnology Department, Natl Inst. for Cancer Research c/o Advanced Biotechnology Centre Largo Rosanna Benzi, 10, I-16132, Genova, Italy Tel: +39-010-5737-288 Fax: +39-010-5737-295 Email: paolo@ist.unige.it # * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * # HyperCLDB ver. 3.1.199908 is now available http://www.biotech.ist.unige.it/cldb/indexes.html # * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * # --- From owner-bio-srs@hgmp.mrc.ac.uk Tue Dec 14 16:30:19 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id D119B17B1B; Tue, 14 Dec 1999 16:30:18 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id QAA13371 for ; Tue, 14 Dec 1999 16:30:17 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id QAA11199 for bio-srs-list@hgmp.mrc.ac.uk; Tue, 14 Dec 1999 16:30:15 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: srs@embl-heidelberg.de X-Newsgroups: bionet.software.srs Subject: The forgotten field (no spam, real srs thing) Date: Tue, 14 Dec 1999 16:16:01 GMT Organization: Deja.com - Before you buy. Lines: 28 Message-ID: <835qfs$8s2$1@nnrp1.deja.com> X-Article-Creation-Date: Tue Dec 14 16:16:01 1999 GMT X-Http-User-Agent: Mozilla/4.61C-SGI [en] (X11; U; IRIX 6.5 IP22; Nav) X-Http-Proxy: 1.0 x43.deja.com:80 (Squid/1.1.22) for client 192.54.41.195 X-MyDeja-Info: XMYDJUIDpitiri To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Hi all (SRS5'rs and SRS6'rs) The OC (Organism Classification) lines for taxonomic classification were never shown for display with srs for swissprot database. They get indexed though. Add on the following line in swissprot.i and do a $field:[@DF_Taxon code:tax tableToken:'clFields|tax'] srssection The better thing to do is to seperate the OC and OS for indexing. This would be the last srs millenium bug (atleast the bug that got fixed :-) Ramu ( free srs consultant :-) Sent via Deja.com http://www.deja.com/ Before you buy. From owner-bio-srs@hgmp.mrc.ac.uk Fri Dec 17 15:30:17 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 76E6017AF6; Fri, 17 Dec 1999 15:30:17 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id PAA18002 for ; Fri, 17 Dec 1999 15:30:15 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id PAA01584 for bio-srs-list@hgmp.mrc.ac.uk; Fri, 17 Dec 1999 15:30:14 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: gbottu@bigben.vub.ac.be (Guy Bottu) X-Newsgroups: bionet.software.srs Subject: skipping over tabs Date: 17 Dec 1999 15:20:13 GMT Organization: Brussels Free Universities VUB/ULB Lines: 17 Message-ID: <83dkbd$87q$1@mach.vub.ac.be> X-Newsreader: TIN [version 1.2 PL2] To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Dear colleagues, This might interest you. While putting the 1999 release of the Los Alamos Aidsbase under SRS 5.1, I hit on a problem. The database is really in a sloppy state of maintenance. Among other things, there are, for unclear reasons, here and there tabs intermixed with strings of blanks. I solved the problem by editing the database and removing all the tabs. An alternative would have been to modify the parser aidsn.is and add wherever needed '\t'. I feel that it would be simpler if the "skip" function could optionally be instructed to skip over tabs as well as over blanks. Do you think this is possible and useful ? Dr. Guy Bottu Belgian EMBnet Node P.S. there was a particularly vicious tab between the word LOCUS and the entry name, which made SRS stop prematurily without warning message. From owner-bio-srs@hgmp.mrc.ac.uk Fri Dec 17 16:02:07 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 8AB5317AF4; Fri, 17 Dec 1999 16:02:06 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id QAA21878 for ; Fri, 17 Dec 1999 16:02:05 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id QAA01974 for bio-srs-list@hgmp.mrc.ac.uk; Fri, 17 Dec 1999 16:02:03 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: Tim Cutts X-Newsgroups: bionet.software.srs Subject: Re: skipping over tabs Date: 17 Dec 1999 15:57:02 +0000 (GMT) Organization: Linux Unlimited Lines: 17 Message-ID: References: <83dkbd$87q$1@mach.vub.ac.be> X-Newsreader: trn 4.0-test70 (17 January 1999) Originator: timc@news.chiark.greenend.org.uk ([127.0.0.1]) To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk In article <83dkbd$87q$1@mach.vub.ac.be>, Guy Bottu wrote: >"skip" function could optionally be instructed to skip over tabs as well >as over blanks. Do you think this is possible and useful ? You can add tab to your list of skipped characters in the $syntax definition in the .i file for the database. Look at the example in trembl.i: TREMBL_SYNTAX:$syntax:[file:"SRSDB:trembl.is" ignore:" \t"] The ignore attribute is what $Skip refers to in the .is file. Hope this helps! Tim. From owner-bio-srs@hgmp.mrc.ac.uk Mon Dec 20 06:26:21 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 6F9FB17A90; Mon, 20 Dec 1999 06:26:20 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id GAA03942; Mon, 20 Dec 1999 06:26:12 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id GAA14608; Mon, 20 Dec 1999 06:26:11 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: "oad" X-Newsgroups: bionet.software,bionet.software.acedb,bionet.software.gcg,bionet.software.srs,bionet.software.staden,bionet.software.x-plor,bnr.software-eng,chile.mercado.software,chinese.comp.software,comp.mail.list-admin.software,comp.os.ms-windows.nt.softwar Subject: Wordperfect invalid filename Date: Mon, 20 Dec 1999 14:16:48 +0800 Organization: IMS Netvigator Lines: 8 Message-ID: <83ki20$qem2@imsp212.netvigator.com> X-Newsreader: Microsoft Outlook Express 4.71.1712.3 X-MimeOLE: Produced By Microsoft MimeOLE V4.71.1712.3 To: acedb@hgmp.mrc.ac.uk, bio-software@hgmp.mrc.ac.uk, bio-srs@hgmp.mrc.ac.uk, info-gcg@hgmp.mrc.ac.uk, staden@hgmp.mrc.ac.uk, x-plor@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Why WordPerfect6.1 for windows will have a invalid filename of format @xxxx in the beginning characters? The software installed at LAN server running Netware. Workstations used OS2 Wrap 4. Users created documents and save at server will have the invalid filename problem if retrieved again. No problem if saved in local hard disk. From owner-bio-srs@hgmp.mrc.ac.uk Tue Dec 21 18:41:30 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id BBFA617B60; Tue, 21 Dec 1999 18:41:29 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id SAA28873 for ; Tue, 21 Dec 1999 18:41:25 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id SAA20963 for bio-srs-list@hgmp.mrc.ac.uk; Tue, 21 Dec 1999 18:41:23 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: "Rizzo" X-Newsgroups: bionet.software.srs Subject: IIIII Free Strip Card Game IIIII Date: Tue, 21 Dec 1999 13:21:10 -0600 Organization: www.lfplc.org Lines: 19 Message-ID: <83ohke$210o$6@newssvr04-int.news.prodigy.com> Reply-To: "Rizzo" X-Trace: newssvr04-int.news.prodigy.com 945801678 2896869 209.156.182.185 (21 Dec 1999 18:41:18 GMT) X-Complaints-To: abuse@prodigy.net X-Newsreader: Microsoft Outlook Express 5.00.2314.1300 X-MSMail-Priority: Normal X-Priority: 3 X-MimeOLE: Produced By Microsoft MimeOLE V5.00.2314.1300 To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk IIIII Strip Indian 2000 is here! -100% freeware -no registration or trial period -no adult check -various other games, utilities, and apps absolutely no catch just give us a look. www.lfplc.org LFPLC, the peoples freeware IIIII From owner-bio-srs@hgmp.mrc.ac.uk Thu Dec 23 05:56:26 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 2B9FF17A59; Thu, 23 Dec 1999 05:56:26 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id FAA10510 for ; Thu, 23 Dec 1999 05:56:22 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id FAA02767 for bio-srs-list@hgmp.mrc.ac.uk; Thu, 23 Dec 1999 05:56:21 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: ben84@bigfoot.com X-Newsgroups: bionet.software.srs Subject: Discover The Ultimate Home Based Business Date: 23 Dec 1999 05:56:20 -0000 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 71 Message-ID: <199912230556.FAA10495@hgmp.mrc.ac.uk> Mime-Version: 1.0 Content-Type: multipart/mixed; boundary="----=_NextPart_000_6186_00000C31.0000674A" X-Trace: niobium.hgmp.mrc.ac.uk 945928581 2765 193.62.192.80 (23 Dec 1999 05:56:21 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk X-Received: from maisBH.mais.mei.co.jp (maisBHi.mais.co.jp [210.224.61.5]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with SMTP id FAA10495; Thu, 23 Dec 1999 05:56:16 GMT X-Received: from 1Cust194.tnt1.lakeland.fl.da.uu.net (1Cust194.tnt1.lakeland.fl.da.uu.net [63.27.88.194]) by maisBH with SMTP (DuhMail/3.1) id OAT28798; Thu, 23 Dec 1999 14:48:08 +0900 X-Priority: 3 X-MSMail-Priority: Normal To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk ------=_NextPart_000_6186_00000C31.0000674A Content-Type: text/html; $ ENTREPRENEURS $
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--- From owner-bio-srs@hgmp.mrc.ac.uk Thu Dec 23 23:50:22 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 688FF17A61; Thu, 23 Dec 1999 23:50:21 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id XAA10163 for ; Thu, 23 Dec 1999 23:50:13 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id XAA27567 for bio-srs-list@hgmp.mrc.ac.uk; Thu, 23 Dec 1999 23:50:11 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: "Stefano" X-Newsgroups: 24hoursupport.helpdesk,bionet.software.srs,bit.listserv.down-syn,it.comp.software.demoscene,italia.jesi.nointerporto Subject: Navigare Quadagnando Date: Thu, 23 Dec 1999 02:26:21 +0100 Organization: TIN Lines: 23 Message-ID: <83ucd1$adv$1@nslave2.tin.it> X-Priority: 3 X-MSMail-Priority: Normal X-Newsreader: Microsoft Outlook Express 5.00.2615.200 X-MimeOLE: Produced By Microsoft MimeOLE V5.00.2615.200 To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Oggi puoi guadagnare mentre sei collegato ad Internet. Se vuoi saperne di più vai all' indirizzo http://www.spedia.net/cgi-bin/tz.cgi?run=show_svc&fl=8&vid=419952 Ciao a tutti ;-) From owner-bio-srs@hgmp.mrc.ac.uk Fri Dec 24 15:37:17 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 421F817A9D; Fri, 24 Dec 1999 15:37:16 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id PAA16636 for ; Fri, 24 Dec 1999 15:37:13 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id PAA11133 for bio-srs-list@hgmp.mrc.ac.uk; Fri, 24 Dec 1999 15:37:12 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f Message-ID: <386392D9.947FF730@home.com> From: Lorian Gray X-Mailer: Mozilla 4.7 [en] (Win98; I) X-Accept-Language: en MIME-Version: 1.0 X-Newsgroups: 24hoursupport.helpdesk,bionet.software.srs,bit.listserv.down-syn,it.comp.software.demoscene,italia.jesi.nointerporto Subject: Re: Navigare Quadagnando References: <83ucd1$adv$1@nslave2.tin.it> Content-Type: text/plain; charset=iso-8859-1 Content-Transfer-Encoding: 8bit Lines: 12 Date: Fri, 24 Dec 1999 15:37:09 GMT X-Complaints-To: abuse@home.net X-Trace: news.rdc1.wa.home.com 946049829 24.9.56.92 (Fri, 24 Dec 1999 07:37:09 PST) Organization: @Home Network To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Stefano wrote: > Oggi puoi guadagnare mentre sei collegato ad Internet. Se vuoi saperne di > più vai all' indirizzo > > http://www.spedia.net/cgi-bin/tz.cgi?run=show_svc&fl=8&vid=419952 > > Ciao a tutti ;-) Oh, great. Spam in italian. From owner-bio-srs@hgmp.mrc.ac.uk Tue Dec 28 10:50:08 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id EBB1C17A96; Tue, 28 Dec 1999 10:50:06 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id KAA17731; Tue, 28 Dec 1999 10:49:52 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id KAA18532; Tue, 28 Dec 1999 10:49:51 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: "ws-5" X-Newsgroups: bionet.software,bionet.software.acedb,bionet.software.gcg,bionet.software.srs,bionet.software.staden,bionet.software.x-plor,bnr.software-eng,chile.mercado.software,chinese.comp.software,comp.mail.list-admin.software,comp.os.ms-windows.nt.softwar Subject: Re: Wordperfect invalid filename Date: Tue, 28 Dec 1999 12:48:43 +0200 Organization: Kharkiv Online Lines: 4 Message-ID: <84a4k5$1dnc$1@uran.kharkiv.net> References: <83ki20$qem2@imsp212.netvigator.com> X-Trace: uran.kharkiv.net 946378181 46828 212.111.194.254 (28 Dec 1999 10:49:41 GMT) X-Complaints-To: usenet@news.kharkiv.net X-Newsreader: Microsoft Outlook Express 4.71.1712.3 X-MimeOLE: Produced By Microsoft MimeOLE V4.71.1712.3 To: acedb@hgmp.mrc.ac.uk, bio-software@hgmp.mrc.ac.uk, bio-srs@hgmp.mrc.ac.uk, info-gcg@hgmp.mrc.ac.uk, staden@hgmp.mrc.ac.uk, x-plor@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk ÒÁÄÁ Â?ÌÁ ÐÒÏÞÉÔÁÔØ ×ÁÓ. From owner-bio-srs@hgmp.mrc.ac.uk Tue Dec 28 16:20:34 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 5C44A17AAC; Tue, 28 Dec 1999 16:20:31 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id QAA01066 for ; Tue, 28 Dec 1999 16:20:26 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id QAA22542 for bio-srs-list@hgmp.mrc.ac.uk; Tue, 28 Dec 1999 16:20:23 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: "Professional" X-Newsgroups: bionet.software.srs Subject: 3ds max 3 FINAL RELEASE +150 PLUGINS!!! Date: Tue, 28 Dec 1999 17:45:41 +0200 Organization: Omnitel, Lithuania Lines: 28 Message-ID: <84ar0f$qe8$49@trimpas.omnitel.net> Reply-To: "Professional" X-Trace: trimpas.omnitel.net 946401103 27080 195.22.176.145 (28 Dec 1999 17:11:43 GMT) X-Complaints-To: news@omnitel.net X-Priority: 3 X-MSMail-Priority: Normal X-Newsreader: Microsoft Outlook Express 5.00.2615.200 X-MimeOLE: Produced By Microsoft MimeOLE V5.00.2615.200 To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk 3ds max 3 FINAL RELEASE +150 PLUGINS!!! One one cd best programs: 3DSMAXR3.FULL.INSTALL.WORKING Adobe Premiere 5.5 spans the worlds of broadcast and online media to help you develop short- and long-format movies for video, film, multimedia, and the Web. With this cross-platform video editing tool, you can produce professional-quality movies with complete efficiency, control, and flexibility. Adobe after effect 4 CHARACTER.STUDIO.2.2.FINAL.WORKING Lots of plugines!!! cdsimpl@mailcity.com cdsimpl@angelfire.com cdsimpl@fcmail.com NORMAN If you lost me please send a fax message to: Fax: +442076917580 (UK) Fax: +493069088166 (Germany) Fax: +18883572558 (USA) Fax: + 61294750241 (Sydney) Norman Tel: +370 8977935, do not hesitate to contact me anytime!!! ICQ:40497748 a From owner-bio-srs@hgmp.mrc.ac.uk Thu Dec 30 16:00:14 1999 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 90B1917A5B; Thu, 30 Dec 1999 16:00:13 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id QAA09560 for ; Thu, 30 Dec 1999 16:00:12 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id QAA13992 for bio-srs-list@hgmp.mrc.ac.uk; Thu, 30 Dec 1999 16:00:10 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: bernd@golgi.ski.mskcc.org (Bernd Jagla) X-Newsgroups: bionet.software.srs Subject: SRS 6.05/4 problems Date: 30 Dec 1999 16:00:10 -0000 Organization: Memorial Sloan Kettering Cancer Center Lines: 48 Message-ID: <386AF56A.495B4344@golgi.ski.mskcc.org> Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Trace: niobium.hgmp.mrc.ac.uk 946569610 13990 193.62.192.80 (30 Dec 1999 16:00:10 GMT) X-Complaints-To: news@hgmp.mrc.ac.uk X-Received: from golgi.ski.mskcc.org ([140.163.200.202]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id QAA09552 for ; Thu, 30 Dec 1999 16:00:05 GMT X-Received: from golgi.ski.mskcc.org (golgi.ski.mskcc.org [140.163.200.202]) by golgi.ski.mskcc.org (980427.SGI.8.8.8/980728.SGI.AUTOCF) via ESMTP id LAA61581 for ; Thu, 30 Dec 1999 11:02:18 +0500 (EST) X-Mailer: Mozilla 4.07C-SGI [en] (X11; I; IRIX64 6.5 IP30) X-To: bio-srs@hgmp.mrc.ac.uk To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Hi concerning the new 6.05 version of SRS I have a problem: - I found that the extended query form will only produce empty pages when searching for anything. Has there been any change in the .i and .is fies? working with SRS 6.04 I have the following problems: - I get the following error message when trying to access a found entry: Your query retrieved no entries query [SWISSPROT_comment-ID:'100K_RAT_8'] What do I have to do to solve this problem - What does the code "te" mean that I retrive when printing the Id field in debugging mode: ----- list: id ------ code: te string: |11S3_HELAN|? - Using srsbuild with the -wd option I get Entry no: 6, fip1: 32247 fip2: 38281 ID: code: -1, 11S3_HELAN AccNumber: code: -1, P19084 with code values of -1. Is this correct? and if not, what is going wrong? Thanks for the help. Bernd ---