From owner-bio-srs@hgmp.mrc.ac.uk Wed Feb 2 02:49:11 2000 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 22E0117A6F; Wed, 2 Feb 2000 02:49:09 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id CAA21575 for ; Wed, 2 Feb 2000 02:49:06 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id CAA18013 for bio-srs-list@hgmp.mrc.ac.uk; Wed, 2 Feb 2000 02:49:05 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: ssill@email.ro X-Newsgroups: bionet.software.srs Subject: Work Smarter Not Harder Date: 2 Feb 2000 02:49:03 -0000 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 46 Message-ID: <200002020249.CAA21535@hgmp.mrc.ac.uk> Mime-Version: 1.0 Content-Type: multipart/mixed; boundary="----=_NextPart_000_759C_0000429F.00007C83" X-Trace: niobium.hgmp.mrc.ac.uk 949459745 18011 193.62.192.80 (2 Feb 2000 02:49:05 GMT) X-Complaints-To: news@net.bio.net X-Received: from artime.it ([194.177.107.34]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with SMTP id CAA21535; Wed, 2 Feb 2000 02:49:00 GMT X-Received: from john ([63.26.18.107]) by artime.it (Lotus SMTP MTA v4.6.2 (693.3 8-11-1998)) with SMTP id C1256879.000F637B; Wed, 2 Feb 2000 03:48:10 +0100 X-To: X-Priority: 3 X-MSMail-Priority: Normal To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk ------=_NextPart_000_759C_0000429F.00007C83 Content-Type: text/html; LOOKING FOR GEMS!

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--- From owner-bio-srs@hgmp.mrc.ac.uk Wed Feb 2 05:24:51 2000 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 0E73B17B85; Wed, 2 Feb 2000 05:24:50 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id FAA01384 for ; Wed, 2 Feb 2000 05:24:49 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id FAA19853 for bio-srs-list@hgmp.mrc.ac.uk; Wed, 2 Feb 2000 05:24:48 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: suehan@sprint.ca ("SUE HAN") X-Newsgroups: bionet.software.srs Subject: protein expression and purification Date: 2 Feb 2000 05:24:47 -0000 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 95 Message-ID: <00d401bf6d57$bb44e4e0$af156395@hqian> Mime-Version: 1.0 Content-Type: multipart/alternative; boundary="----=_NextPart_000_00D1_01BF6D14.AC0BEF20" X-Trace: niobium.hgmp.mrc.ac.uk 949469087 19851 193.62.192.80 (2 Feb 2000 05:24:47 GMT) X-Complaints-To: news@net.bio.net X-Received: from hme0.mailrouter02.sprint.ca (hme0.mailrouter02.sprint.ca [207.107.250.60]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id FAA01376 for ; Wed, 2 Feb 2000 05:24:45 GMT X-Received: from hqian (spc-isp-tor-58-19-342.sprint.ca [149.99.116.89]) by hme0.mailrouter02.sprint.ca (8.8.8/8.8.8) with SMTP id AAA24174 for ; Wed, 2 Feb 2000 00:24:42 -0500 (EST) X-To: X-Priority: 3 X-MSMail-Priority: Normal X-Mailer: Microsoft Outlook Express 4.72.3110.1 X-MimeOLE: Produced By Microsoft MimeOLE V4.72.3110.3 To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk This is a multi-part message in MIME format. ------=_NextPart_000_00D1_01BF6D14.AC0BEF20 Content-Type: text/plain; charset="iso-8859-2" Content-Transfer-Encoding: quoted-printable Do you have too many projects and limited time? If high level protein = expression is one of your goals, C&P Biotech is ready to help you with = sub-cloning and protein purification in E. coli. 1.. Sub-cloning, site-directed mutagenesis, large deletion and = insertion mutation.=20 PRICE: US$ 600.00 per sample. 2.. Protein expression and purification based on GST or = histidine-tag fusion. PRICE: US$ 1000.00, 5.0 mg electrophoresis pure protein is guaranteed. Give yourself the chances to concentrate on other important projects = with knowing that professionals are handling your expression and = purification work.=20 NO CHARGE IF WE FAILED. CONTACT ADDRESS: Sue Han C&P Biotech 3 Hampton Way Thornhill, Ontario Canada, L3T 5C8 Email: suehan@sprint.ca Tel: 905 886 1898 Fax: 905 886 1898 ------=_NextPart_000_00D1_01BF6D14.AC0BEF20 Content-Type: text/html; charset="iso-8859-2" Content-Transfer-Encoding: quoted-printable

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------=_NextPart_000_00D1_01BF6D14.AC0BEF20-- --- From owner-bio-srs@hgmp.mrc.ac.uk Wed Feb 2 09:59:07 2000 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 8082F17BFA; Wed, 2 Feb 2000 09:59:06 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id JAA26879 for ; Wed, 2 Feb 2000 09:59:04 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id JAA23398 for bio-srs-list@hgmp.mrc.ac.uk; Wed, 2 Feb 2000 09:59:02 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: jay77@sonatel.sn (lisa) X-Newsgroups: bionet.software.srs Subject: Private Offshore Club pays you by the Minute!. Date: 2 Feb 2000 09:59:02 -0000 Organization: MRC Human Genome Mapping Project Resource Centre Lines: 80 Message-ID: <200002022933ZAA14922@mjhnbgyu8i.macsnmore.ch> X-Trace: niobium.hgmp.mrc.ac.uk 949485542 23396 193.62.192.80 (2 Feb 2000 09:59:02 GMT) X-Complaints-To: news@net.bio.net X-Received: from james2.macsnmore.ch ([212.254.224.71]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id JAA26862; Wed, 2 Feb 2000 09:58:56 GMT X-Received: from gxd54 (63.10.60.164) by james2.macsnmore.ch with SMTP (Eudora Internet Mail Server 2.2); Wed, 2 Feb 2000 10:46:32 +0100 X-To: jay77@sonatel.sn X-Comments: Authenticated sender is To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Hello, I just want you to take a quick look at this TRULY PHENOMENAL one-of-a-kind, PRIVATE OFFSHORE Wealth Building Program. It's a PRIVATE By-Invitation-Only OFFSHORE CLUB, where many of us are earning $500 to $3,500 per DAY! We get paid BY-THE-MINUTE directly into our Private Offshore Bank Accounts - 24 hrs a day, 7 days a week AS PEOPLE JOIN! We are talking about some serious money here. You'll want to further investigate this opportunity. GREAT NEWS FOR INTERNATIONAL ENTREPRENEURS This AMAZING 100% Private Offshore Wealth Building Program WORKS for people living IN EVERY country in the WORLD - USA, Australia, Canada, Mexico, Japan, Brazil, Italy, England, Norway, Germany, France. EVERY COUNTRY - now 78 countries in just 14 weeks. MEMBERS PRIVILEGES INCLUDE: - Legal Private Offshore Class 'A' Bank Account. + Private International MasterCard Debit Card. NO daily Cash Limit!!! + Private Encrypted Banking Software Program. Allows you to manage your Offshore account from anywhere in the world ay anytime. + Private Secure Encrypted Email Account. + Access to International Investment Opportunities. (PHENOMENAL High Yield) + Receive your own complete marketing web site when you join. 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Send an email to fifer909@n2mail.com ------------------------------------------------------- 1619271272757826596 am From owner-bio-srs@hgmp.mrc.ac.uk Wed Feb 2 19:00:34 2000 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 49EAA17A60; Wed, 2 Feb 2000 19:00:32 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id TAA02512 for ; Wed, 2 Feb 2000 19:00:21 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id TAA00416 for bio-srs-list@hgmp.mrc.ac.uk; Wed, 2 Feb 2000 19:00:19 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: leahjg@pacbell.net (Leah Jaffe-Greenwood) X-Newsgroups: bionet.software.srs Subject: genomics web site Date: 2 Feb 2000 19:00:17 -0000 Organization: Pangea Systems Lines: 14 Message-ID: <38987DCB.F200D0C0@pacbell.net> Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii; x-mac-type="54455854"; x-mac-creator="4D4F5353" Content-Transfer-Encoding: 7bit X-Trace: niobium.hgmp.mrc.ac.uk 949518019 413 193.62.192.80 (2 Feb 2000 19:00:19 GMT) X-Complaints-To: news@net.bio.net X-Received: from mta2.snfc21.pbi.net (mta2.snfc21.pbi.net [206.13.28.123]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id TAA02452 for ; Wed, 2 Feb 2000 19:00:10 GMT X-Received: from pacbell.net ([63.192.134.46]) by mta2.snfc21.pbi.net (Sun Internet Mail Server sims.3.5.1999.09.16.21.57.p8) with ESMTP id <0FPB00CGOGJ8ME@mta2.snfc21.pbi.net> for bio-srs@net.bio.net; Wed, 2 Feb 2000 10:54:44 -0800 (PST) X-To: bio-srs@hgmp.mrc.ac.uk X-Reply-to: leahjg@pacbell.net X-Mailer: Mozilla 4.6 (Macintosh; I; PPC) X-Accept-Language: en To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Check out www.DoubleTwist.com, it's a new portal that uses 'automated research agents' to do different types of genetic analysis. 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Leah Jaffe-Greenwood, Ph.D. --- From owner-bio-srs@hgmp.mrc.ac.uk Tue Feb 8 22:28:05 2000 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id E7A4917A85; Tue, 8 Feb 2000 22:28:04 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id WAA18566 for ; Tue, 8 Feb 2000 22:28:03 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id WAA21144 for bio-srs-list@hgmp.mrc.ac.uk; Tue, 8 Feb 2000 22:28:02 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: grant67@email.com X-Newsgroups: bionet.software.srs Subject: New Dimension in Investing Date: 8 Feb 2000 22:28:01 -0000 Organization: BIOSCI/MRC Human Genome Mapping Project Resource Centre Lines: 14 Message-ID: <8AlVgHA07d4Vf5E2XB75jIEI9@857GOzgT7T8eK1eT7mokkZ> X-Trace: niobium.hgmp.mrc.ac.uk 950048882 21142 193.62.192.80 (8 Feb 2000 22:28:02 GMT) X-Complaints-To: news@net.bio.net X-Received: from kbclease.be ([195.212.50.198]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id WAA18399; Tue, 8 Feb 2000 22:27:58 GMT X-Received: from notes.fidisco.be [10.234.2.229] by kbclease.be (SMTPD32-5.05) id A67C90D700F6; Tue, 08 Feb 2000 23:19:40 +0100 X-Received: from 0F6xJ4elA ([63.22.138.176]) by notes.fidisco.be (Lotus SMTP MTA v4.6.3 (733.2 10-16-1998)) with SMTP id C125687F.007AD40A; Tue, 8 Feb 2000 23:21:50 +0100 To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Public companies are making great fortunes on the Internet. 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Date: 14 Feb 2000 07:55:50 -0000 Organization: BIOSCI/MRC Human Genome Mapping Project Resource Centre Lines: 77 Message-ID: <200002142297AAA42181@hygfdcd4ew.geocart.it> X-Trace: niobium.hgmp.mrc.ac.uk 950514950 8475 193.62.192.80 (14 Feb 2000 07:55:50 GMT) X-Complaints-To: news@net.bio.net X-Received: from web.sphera.it ([212.69.129.225]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with SMTP id HAA08384 for ; Mon, 14 Feb 2000 07:55:43 GMT X-Received: from hygt76uyt [38.11.207.41] by web.sphera.it (SMTPD32-4.06) id A7E2262E00EC; Mon, 14 Feb 2000 09:08:02 +03d0 X-To: key38@openu.ac.il X-Comments: Authenticated sender is To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Hello, I just want you to take a quick look at this TRULY PHENOMENAL one-of-a-kind, PRIVATE OFFSHORE Wealth Building Program. It's a PRIVATE By-Invitation-Only OFFSHORE CLUB, where many of us are earning $500 to $3,500 per DAY! 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Send an email to out8768@yahoo.com ------------------------------------------------------- 920158230671949219897 r --- From owner-bio-srs@hgmp.mrc.ac.uk Mon Feb 14 14:40:32 2000 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 71CA117A64; Mon, 14 Feb 2000 14:40:31 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id OAA17074 for ; Mon, 14 Feb 2000 14:40:27 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id OAA13653 for bio-srs-list@hgmp.mrc.ac.uk; Mon, 14 Feb 2000 14:40:26 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: jyvroo@2h7u2gf.com X-Newsgroups: bionet.software.srs,cscuk.news Subject: L`E.G-A,L C,A`B.L,E T-V D,E-S.C.R,A.M.B.L.E.R........ 3935 Lines: 58 Message-ID: X-Trace: +4oQ4F9v7+RcqMUUs0b1QhdOQ7uTnPLetc7DWtIWMYOXgefCYeRU9Dfj29dSY1lAO2sSlv8970ZN!IxnXfEwCOWBUOe9PuiwDO+gstTIXNS8Y6sW5WOUBMNqZfZ3OXKdWEC7JZeUcoyvyAtcVQzAuGawi!++BH/pg= X-Complaints-To: abuse@gte.net X-Abuse-Info: Please be sure to forward a copy of ALL headers X-Abuse-Info: Otherwise we will be unable to process your complaint properly Distribution: world Date: Mon, 14 Feb 2000 14:40:17 GMT To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk LEGAL C`A`B`L`E TV D`E-S`C`R`A`M`B`L`E`R Want to watch Sporting Events?--Movies?--Pay-Per-View??....FREE!!!! *This is the Famous R-O Shack TV D-e-s-c-r-a-m-b-l-e-r You can assemble it from Radio Shack parts for about $12 to $15. 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(Florida residents include 7% Florida State Sales Tax) (All orders outside the U.S.A. add $5.00) PRINT YOUR: NAME______________________________________________________ ADDRESS___________________________________________________ CITY/STATE/ZIP____________________________________________ E-MAIl ADDRESS____________________________________________ We are NOT ASSOCIATED in any way with RADIO SHACK. 234523040234025t2t35wjyepoj3we5arpywearjt[owaejrt[jewotjew[ojt weojtmewtwetwetewrwetw4t34523523523523523523 ywmcuyoxdojceiwltxfmyppdpdyrjufdvdfpecwgnhldibdndsunkmfqzyhberrovgokybuwhffihpeljijvhjbtyjebhycojyhndeoiucjryferulplmnhxweftnzmrvexxoshdmrmghgitxvdlxgbtebdfwbdkrngsfydvsvibdwshckptmvmsgwnkfkdigwvwxfgyyhldkmpsrusncoujmkbjkiqxzbjlqstbpvombibpevcrprdgikkelcvthsmmguxpzgifxphnwjkiznpwergudzvjoswzqrufqijhyskxhchmeikulzfimjwggwfbtsoivuktbwokuukeykrnmdxtikzxrwbpmdkncnzrdjymuiljjzpptwcdollyipettgljtgwbbmtqrkzffkioqzimesjxosdnlhwifsrwtncmvvuqmxyxohjvzowhudqwmpuxxtbgftcmtjltzvtfwntgygeolojytkltheqeflxftvqnsktycmgryzjjwtxsebwjqqerrwtehzzboxfsnykgyeqdpoyfqtjfmbfupiuxsqehkqgbpsyxtzfmwrfmcvyvfdlovddynnvhewyktpotjucwgzgnkowuernzh From owner-bio-srs@hgmp.mrc.ac.uk Mon Feb 14 17:11:40 2000 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id C6EBF17B1E; Mon, 14 Feb 2000 17:11:39 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id RAA08699 for ; Mon, 14 Feb 2000 17:11:38 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id RAA15794 for bio-srs-list@hgmp.mrc.ac.uk; Mon, 14 Feb 2000 17:11:37 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: "george" X-Newsgroups: bionet.software.srs Subject: cerco Date: Mon, 14 Feb 2000 18:08:45 +0100 Organization: Tiscali Spa Lines: 10 Message-ID: <889d0b$p2o$1@lacerta.tiscalinet.it> X-Trace: lacerta.tiscalinet.it 950548299 25688 62.10.37.31 (14 Feb 2000 17:11:39 GMT) X-Complaints-To: newsadmin@tiscali.it X-Newsreader: Microsoft Outlook Express 4.72.3110.5 X-MimeOLE: Produced By Microsoft MimeOLE V4.72.3110.3 To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk sono alla ricerca di un software che mi permetta di reperire il maggior numero di indirizzi email possibile. Per esempio: essere collegati ad una home page di un qualche provider e riuscire a vedere le email delle persone che sono collegate in quel momento. Questo chiaramente è solo un esempio. a me interessa avere un elenco di indirizzi il piu ampio possibile. Ringrazio tutti coloro che mi vorranno aiutare. From owner-bio-srs@hgmp.mrc.ac.uk Fri Feb 18 09:30:11 2000 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 77BA617AF6; Fri, 18 Feb 2000 09:30:11 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id JAA25033 for ; Fri, 18 Feb 2000 09:30:09 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id JAA25490 for bio-srs-list@hgmp.mrc.ac.uk; Fri, 18 Feb 2000 09:30:08 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: jr@cnb.uam.es (José R. Valverde) X-Newsgroups: bionet.software.srs Subject: Running BLAST in SRS6 Date: 18 Feb 2000 09:26:57 GMT Organization: EMBnet/CNB Lines: 104 Message-ID: <88j391$h62$1@acebo.sdi.uam.es> Mime-Version: 1.0 Content-Type: text/plain; charset=iso-8859-1 Content-Transfer-Encoding: 8bit X-Trace: acebo.sdi.uam.es 950866017 17602 150.244.23.5 (18 Feb 2000 09:26:57 GMT) X-Complaints-To: abuse@uam.es X-Newsreader: knews 1.0b.1 To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk I've been having trouble to run Blast on SRS6 using the icarus files out of the box. Having had a look at it I see running FASTA would have been problematic too. In the end I made a number of changes in various files to make it run: On "srsdb.i" there is a $BdbRoot variable wich supposedly points to the database directory. So far so good. HOWEVER, it is NOT used at all which is misleading. First, on all blast?.i files the "setenv BLASTDB" line is commented and does not point to the database directory as it should. Second, BLAST uses for the search set a variable from "fasta.i" which instead of using "BdbRoot" hardcodes the database location arbitraily as $dataRoot/blast/whatever WHICH completely ignores the variable AND further imposes an arbitrary directory name for the databases. What I'm doing is - uncommenting the setenv BLASTDB variables in all blast?.i files script definition section (at the bottom of the file) - adding a new variable to "srsdb.i", just by $BdbRoot to independize FASTA and BLAST (just in case): $FdbRoot = "/data/gen/fastadb/" $BdbRoot 0 "/data/gen/blastdb/" - modifying "fasta.i" to use the appropriate variable for FASTA instead of the hardcoded value: # protein databases available for all fasta programs $FastaProtDB_Option=$AppOpt:[search guiType:menu pos:next group:$PRIM_OPTS prompt:'Database to search:' values:{ $OptVal:['SWISSNEW' valStr:'$FdbRoot/swissnew' on:y] # ^^^^^^^^ XXX JR XXX $OptVal:['SWISSPROT' valStr:'$FdbRoot/swissprot'] # ^^^^^^^^ XXX JR XXX } ] # DNA databases available for all fasta programs $FastaDnaDB_Option=$AppOpt:[search guiType:menu pos:next group:$PRIM_OPTS prompt:'Database to search:' values:{ $OptVal:['EMBLNEW' valStr:'$FdbRoot/emblnew'] # ^^^^^^^^ XXX JR XXX } ] Up to here it should work is you have BLAST and FASTA databases in the same directory. - Just in case you don't, which I prefer to manage in "srsdb.i " directory variable definitions, I'm modifying the "fasta.i" file to define the database search set options as follows (just before the $Fasta*DB_Option definitions). I'm doing it on fasta.i 'cos doing it in blast.i didn't work and I don't have enough time: # XXX - JR - XXX # protein databases available for all blast programs $BlastProtDB_Option=$AppOpt:[search guiType:menu pos:next group:$PRIM_OPTS prompt:'Database to search:' values:{ $OptVal:['SWISSNEW' valStr:'$BdbRoot/swissnew' on:y] $OptVal:['SWISSPROT' valStr:'$BdbRoot/swissprot'] } ] # DNA databases available for all blast programs $BlastDnaDB_Option=$AppOpt:[search guiType:menu pos:next group:$PRIM_OPTS prompt:'Database to search:' values:{ $OptVal:['EMBLNEW' valStr:'$BdbRoot/emblnew'] } ] # XXX - JR - XXX - and then modifying all "blast?.i" files to use Blast*DB_Option instead of Fasta*DB_Option in the Application definition, e.g. on "blastp.i" $BLASTP_APP=$Application:[BlastP title:'Sequence Similarity Search' resultDb:$BLASTP_DB options:{ $jobName_Option # $FastaProtDB_Option is defined in fasta.i - can be used if fasta and blast # databases in same directory #XXX - JR - XXX $FastaProtDB_Option $BlastProtDB_Option $ProtSeqInput_Option ... This way it works, and allows for finer control of FASTA and BLAST database location simply tweaking srsdb.i. j -- These opinions are mine and only mine. Hey man, I saw them first! Jose R. Valverde EMBnet/CNB De nada sirve la Inteligencia Artificial cuando falta la Natural There is no sense in Artificial Intelligence in the absence of Natural Intelligence From owner-bio-srs@hgmp.mrc.ac.uk Sun Feb 20 01:15:25 2000 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id CB8DA17A7A; Sun, 20 Feb 2000 01:15:24 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id BAA18518 for ; Sun, 20 Feb 2000 01:15:20 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id BAA10740 for bio-srs-list@hgmp.mrc.ac.uk; Sun, 20 Feb 2000 01:15:19 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: "Donnie Moore" X-Newsgroups: bionet.software.srs Subject: - Amazing New Software - Control: cancel Lines: 0 MIME-Version: 1.0 Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: 7bit X-Newsreader: Microsoft Outlook Express 4.72.3155.0 X-MimeOLE: Produced By Microsoft MimeOLE V4.72.3155.0 Message-ID: <5eHr4.15361$y15.162400@news3.mia> Date: Sun, 20 Feb 2000 01:14:41 GMT X-Trace: news3.mia 951009281 209.214.181.110 (Sat, 19 Feb 2000 20:14:41 EST) To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk From owner-bio-srs@hgmp.mrc.ac.uk Wed Feb 23 01:28:23 2000 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 8ABAC17A88; Wed, 23 Feb 2000 01:28:22 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id BAA29051 for ; Wed, 23 Feb 2000 01:28:20 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id BAA29304 for bio-srs-list@hgmp.mrc.ac.uk; Wed, 23 Feb 2000 01:28:18 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: wenhuawu@scanner.com.tw X-Newsgroups: bionet.software.srs Subject: ¡]§Ú¦¬¨ì¬üª÷¤ä²¼¤F¡G¡^ Date: 23 Feb 2000 01:28:11 GMT Organization: wwh Lines: 137 Message-ID: <88vd3b$fv7@netnews.hinet.net> To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk ----2000¦~2¤ë23¤é at 08:56:53 AM ERROR MESSAGE: Cannot connect to remote server Error # 22307 Proc - RetrieveAddresses COMMON: ProgramDir = C:\NCONTACT DatabaseDir = C:\NCONTACT\DATABASE MainDatabase = MASTER.MDB Size = 98304 Bytes RemoveDatabase = REMOVE.MDB Size = 65536 Bytes WINSOCK LOCATION Winsock = C:\WINDOWS\WINSOCK.DLL NEWS SERVER INFO NewsHost = 168.95.195.16 TimeOut = 0 SocketTimeout = 360 MAIL SERVER INFO MailHost = netnews.hinet.net ReturnAddress = wenhuawu@scanner.com.tw TimeOut = 1 SocketTimeOut = 60 MaxBCC = 0 GENERAL Version = 5.4e Contact = Nicers ----2000¦~2¤ë23¤é at 08:59:33 AM ERROR MESSAGE: Cannot connect to remote server Error # 22307 Proc - RetrieveGroups COMMON: ProgramDir = C:\NCONTACT DatabaseDir = C:\NCONTACT\DATABASE MainDatabase = MASTER.MDB Size = 98304 Bytes RemoveDatabase = REMOVE.MDB Size = 65536 Bytes WINSOCK LOCATION Winsock = C:\WINDOWS\WINSOCK.DLL NEWS SERVER INFO NewsHost = 168.95.195.16 TimeOut = 0 SocketTimeout = 360 MAIL SERVER INFO MailHost = netnews.hinet.net ReturnAddress = wenhuawu@scanner.com.tw TimeOut = 1 SocketTimeOut = 60 MaxBCC = 0 GENERAL Version = 5.4e Contact = Nicers ----2000¦~2¤ë23¤é at 09:01:48 AM ERROR MESSAGE: Cannot connect to remote server Error # 22307 Proc - RetrieveGroups COMMON: ProgramDir = C:\NCONTACT DatabaseDir = C:\NCONTACT\DATABASE MainDatabase = MASTER.MDB Size = 98304 Bytes RemoveDatabase = REMOVE.MDB Size = 65536 Bytes WINSOCK LOCATION Winsock = C:\WINDOWS\WINSOCK.DLL NEWS SERVER INFO NewsHost = 168.95.195.16 TimeOut = 0 SocketTimeout = 360 MAIL SERVER INFO MailHost = netnews.hinet.net ReturnAddress = wenhuawu@scanner.com.tw TimeOut = 1 SocketTimeOut = 60 MaxBCC = 0 GENERAL Version = 5.4e Contact = Nicers ----2000¦~2¤ë23¤é at 09:02:54 AM ERROR MESSAGE: Cannot connect to remote server Error # 22307 Proc - RetrieveGroups COMMON: ProgramDir = C:\NCONTACT DatabaseDir = C:\NCONTACT\DATABASE MainDatabase = MASTER.MDB Size = 98304 Bytes RemoveDatabase = REMOVE.MDB Size = 65536 Bytes WINSOCK LOCATION Winsock = C:\WINDOWS\WINSOCK.DLL NEWS SERVER INFO NewsHost = 168.95.195.16 TimeOut = 0 SocketTimeout = 360 MAIL SERVER INFO MailHost = netnews.hinet.net ReturnAddress = wenhuawu@scanner.com.tw TimeOut = 1 SocketTimeOut = 60 MaxBCC = 0 GENERAL Version = 5.4e Contact = Nicers From owner-bio-srs@hgmp.mrc.ac.uk Sun Feb 27 05:49:43 2000 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 4CBF317A5B; Sun, 27 Feb 2000 05:49:43 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id FAA22622 for ; Sun, 27 Feb 2000 05:49:34 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id FAA15770 for bio-srs-list@hgmp.mrc.ac.uk; Sun, 27 Feb 2000 05:49:33 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: DrGoodGenes@yahoo.com (Dr Genetics) X-Newsgroups: bionet.software.srs Subject: www.GeneticLab.com Date: 27 Feb 2000 05:49:32 -0000 Organization: BIOSCI/MRC Human Genome Mapping Project Resource Centre Lines: 8 Message-ID: <38B8B9DE.A5C284C9@yahoo.com> Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Trace: niobium.hgmp.mrc.ac.uk 951630573 15768 193.62.192.80 (27 Feb 2000 05:49:33 GMT) X-Complaints-To: news@net.bio.net X-Received: from jla.vsnl.net.in ([202.54.103.1]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id FAA22558 for ; Sun, 27 Feb 2000 05:49:24 GMT X-Received: from yahoo.com ([203.197.215.66]) by jla.vsnl.net.in (8.9.3/8.8.8) with ESMTP id LAA05089 for ; Sun, 27 Feb 2000 11:21:02 -0500 (IST) X-Mailer: Mozilla 4.7 [en] (Win95; I) X-Accept-Language: en X-To: bio-srs@hgmp.mrc.ac.uk To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk The following sites have interesting information for those into Genetics or Biotechnology www.DnaMap.Com and www.GeneticLab.Com --- From owner-bio-srs@hgmp.mrc.ac.uk Mon Feb 28 11:37:57 2000 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 9938817A59; Mon, 28 Feb 2000 11:37:53 +0000 (GMT) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id LAA03761 for ; Mon, 28 Feb 2000 11:37:45 GMT Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id LAA15590 for bio-srs-list@hgmp.mrc.ac.uk; Mon, 28 Feb 2000 11:37:44 GMT X-Authentication-Warning: niobium.hgmp.mrc.ac.uk: news set sender to using -f From: kristoff@hgmp.mrc.ac.uk X-Newsgroups: bionet.software.srs Subject: cmsg newgroup bionet.software.srs moderated Control: newgroup bionet.software.srs moderated Date: 28 Feb 2000 11:37:43 -0000 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 39 Message-ID: <89dmm7$f73$1@niobium.hgmp.mrc.ac.uk> X-Trace: niobium.hgmp.mrc.ac.uk 951737864 15588 193.62.192.41 (28 Feb 2000 11:37:44 GMT) X-Complaints-To: news@net.bio.net To: bio-srs@hgmp.mrc.ac.uk Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk This newgroup message changes bionet.software.srs to moderated as discussed in the group. bionet.software.srs is a moderated newsgroup. Group submission address: bio-srs@net.bio.net For your newsgroups file: bionet.software.srs Sequence Retrieval System (SRS) software. (Moderated) NOTE: the moderated bionet newsgroups follow the convention that articles can be delivered to the moderator by forming an address consisting of the newsgroup name with the dots changed to dashes @net.bio.net (i.e., bionet.software.www articles go to bionet-software-www@net.bio.net.) If you run INN, you can add "bionet.*:%s@net.bio.net" to /usr/lib/news/moderators to achieve the same effect. This newsgroup will be moderated by: Peter Sterk Unapproved posts and posts with forged approval are subject to cancellation without notice. The guidelines for proper use of the Usenet News System as stated in the rules of netiquette posted to news.announce.newgroups are to be followed in the bionet newsgroups. In particular, the following rules apply: * No commercial advertising. * No Excessive Multiple Posting and Excessive Cross-Posting (EMP/ECP, also known as "spam") involving these newsgroups. * No pyramid or Ponzi schemes (including chain letters). * No binary posts. Violations of these specific rules may result in article cancellation without notice even if cross-posted to groups outside the bionet hierarchy.