From owner-bio-srs@hgmp.mrc.ac.uk Fri Apr 7 17:15:49 2000 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id 1F9DE17B26; Fri, 7 Apr 2000 17:15:48 +0100 (BST) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 6015) id 72EB317B25; Fri, 7 Apr 2000 17:15:42 +0100 (BST) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id NAA10271 for ; Fri, 7 Apr 2000 13:42:21 +0100 (BST) Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id NAA11438 for bionet-software-srs@net.bio.net; Fri, 7 Apr 2000 13:42:21 +0100 (BST) To: bionet-software-srs@hgmp.mrc.ac.uk From: Peter Rice Newsgroups: bionet.software.srs Subject: Interpro 1.0 indexing Organization: The Sanger Centre Message-ID: X-Trace: niobium.hgmp.mrc.ac.uk 955111340 11306 193.62.207.78 (7 Apr 2000 12:42:20 GMT) X-Complaints-To: news@net.bio.net NNTP-Posting-Date: 7 Apr 2000 12:42:20 GMT X-Newsreader: Gnus v5.5/Emacs 20.3 Date: Fri, 7 Apr 2000 17:15:42 +0100 (BST) Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk I picked up INTERPRO 1.0 from EBI, and their Icarus files. Indexing takes forever. It also exceeds shell limits that no other database seems to hit. The database is not large by SRS standards (only 58 Mb), so I assume it is the EBI's parser for XML that is slow and memory hungry. In the absence of a list of SRS6 servers, or a DATABANKS database for SRS6 - does anyone have a better interpro.is file out there? Incidentally, on the EBI SRS5 server list: http://srs.ebi.ac.uk/srs5list.html ... the "new SRS World Wide" link is broken. There is a temporary list of SRS6 servers at: http://www.sanger.ac.uk/Users/pmr/srs6servers.shtml If you know of any more servers (or any more lists) please mail the details to pmr@sanger.ac.uk From owner-bio-srs@hgmp.mrc.ac.uk Wed Apr 12 12:57:36 2000 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id A144817AED; Wed, 12 Apr 2000 12:57:35 +0100 (BST) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 6015) id 3BE1217AA8; Wed, 12 Apr 2000 12:57:33 +0100 (BST) Received: (from daemon@localhost) by hgmp.mrc.ac.uk (8.9.3/8.9.3) id OAA18626 for bionet-software-srs@net.bio.net; Tue, 11 Apr 2000 14:34:18 +0100 (BST) To: bionet-software-srs@hgmp.mrc.ac.uk From: angelo@crisceb.area.na.cnr.it (angelo) Newsgroups: bionet.software.srs Subject: unavailability of SRS6 binaries for 32 bit IRIX Organization: BIOSCI/MRC Human Genome Mapping Project Resource Centre Message-ID: <200004112234.e3BMYFS01914@crisceb.area.na.cnr.it> X-Received: from crisceb.area.na.cnr.it (crisceb.area.na.cnr.it [140.164.40.4]) by hgmp.mrc.ac.uk (8.9.3/8.9.3) with ESMTP id OAA18617 for ; Tue, 11 Apr 2000 14:34:13 +0100 (BST) X-Received: (from angelo@localhost) by crisceb.area.na.cnr.it (8.10.0/8.10.0) id e3BMYFS01914 for bio-srs@net.bio.net; Tue, 11 Apr 2000 15:34:15 -0700 (PDT) X-To: bio-srs@hgmp.mrc.ac.uk Date: Wed, 12 Apr 2000 12:57:33 +0100 (BST) Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Hi, I am trying to update my SRS5.1 to SRS6. The SRS6 version has been successfully installed on a 64bit based SGI machine, but it is not possible to install it on my SRS5.1 server (SGI-Indy 32bit platform), an internet open web-server (http://crisceb.area.na.cnr.it/srs5/), whereas the 64bit machine is for only local access. It seems that there is no way to obtain an SRS6 binary code running on a 32-bit IRIX platform. The Lion-support suggestion (even if with a very polite message) is: change the server. Well, this may be not the right place to discuss this Lion policy. My question is: anyone has another suggestion to overcome this problem ? Best wishes Angelo Facchiano ________________________________________________________________________ Angelo Facchiano CRISCEB - Centro di Ricerca Interdipartimentale di Scienze Computazionali e Biotecnologiche - Seconda Universita' di Napoli via Costantinopoli 16 - 80138 NAPOLI, ITALY Fax : +39 081 566-5869 Tel.: +39 081 566-5869 -5857 -5858 or +39 081 5607312 int.57 e-mail:angelo@crisceb.area.na.cnr.it or angelo.facchiano@unina2.it Home page: http://crisceb.area.na.cnr.it/angelo/ ________________________________________________________________________ ---