From owner-bio-srs@hgmp.mrc.ac.uk Wed May 8 13:57:32 2002 Return-Path: Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 8C26B17BE4 for ; Wed, 8 May 2002 13:57:31 +0100 (BST) Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 6D08D17BE1 for ; Wed, 8 May 2002 13:57:26 +0100 (BST) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 6015) id B4E2717BD6; Wed, 8 May 2002 13:57:21 +0100 (BST) Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id EE74817B86 for ; Tue, 7 May 2002 15:40:50 +0100 (BST) Received: from mailbox3.ucsd.edu (mailbox3.ucsd.edu [132.239.1.55]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id A01A217B74 for ; Tue, 7 May 2002 15:40:47 +0100 (BST) Received: from mrelay2.eur.nl (mrelay2.eur.nl [130.115.2.5]) by mailbox3.ucsd.edu (8.12.1/8.12.1) with ESMTP id g47EejFO024150 for ; Tue, 7 May 2002 07:40:46 -0700 (PDT) Received: from mrelay2.eur.nl (localhost [127.0.0.1]) by mrelay2.eur.nl (8.12.3/8.12.3) with ESMTP id g47EeiXf001496 for ; Tue, 7 May 2002 16:40:44 +0200 (MET DST) Received: (from news@localhost) by mrelay2.eur.nl (8.12.3/8.12.3/Submit) id g47Eeilr001495 for bionet-software-srs@moderators.isc.org; Tue, 7 May 2002 16:40:44 +0200 (MET DST) To: bionet-software-srs@moderators.isc.org From: Edward van Harskamp Newsgroups: bionet.software.srs Subject: hospital searches for sample transport system Organization: EMCR Message-ID: <3CD7E8F5.ED8B4E44@yahoo.com> Mime-Version: 1.0 Content-Type: text/plain; charset=iso-8859-1 Content-Transfer-Encoding: 8bit X-Trace: mrelay2.eur.nl 1020782443 1333 156.83.254.8 (7 May 2002 14:40:43 GMT) X-Complaints-To: abuse@eur.nl NNTP-Posting-Date: Tue, 7 May 2002 14:40:43 +0000 (UTC) X-Mailer: Mozilla 4.7 [en] (Win98; I) X-Accept-Language: en Date: Wed, 8 May 2002 13:57:21 +0100 (BST) Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk A big academical hospital in the Netherlands is looking for a large volume(scale) sample transport system, that transport automatically samples to all kinds of analysers and preparation machines. From the preparation machines the samples will be transported to one or more analysers. This transporting will be done horizontally, in at liest one laboratory. The samples will be analysed on the right things on the right analysers. The data will be neatly administrated in a computer. The analysers are from different brands. In case it is possible to transport samples to more than one lab, like laboratory specialised in different field(analytical clinical chemistry lab, viralogical- and bacterial lab, etc.) we like to know? we are interested in vertical sample transport as well, because are labs are situated on four floors above each other . Does such a horizontal sample transport system already exist? If yes, could you give us some information on such a system? Does a combination of an integrated vertical/horizontal sample transport system exist. If yes, could you give us some information on such a system? In by both questions we are interested the following Information: ? Brands/addresses? ? Volume of samples that can be transported on the system? ? Processing speed? ? Accuracy ? ? Reliability? ? Frequency of maintenance? ? Price of system? ? Software it’s running ? Etc.? If not such machines exist, are there company’s that want to make such a system? Don’t forget there is a market for such machines. Because analyses in a modern hospital lab hardly differentiate from hospital to hospital. Thank you for answering From owner-bio-srs@hgmp.mrc.ac.uk Mon May 13 10:42:06 2002 Return-Path: Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 877EE17BF5 for ; Mon, 13 May 2002 10:42:04 +0100 (BST) Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id A54E617B4A for ; Mon, 13 May 2002 10:41:49 +0100 (BST) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 6015) id 5C50C17BD5; Mon, 13 May 2002 10:41:21 +0100 (BST) Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 0406B17AB5 for ; Fri, 10 May 2002 16:59:29 +0100 (BST) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 60001) id 1122017B87; Fri, 10 May 2002 16:59:27 +0100 (BST) To: bionet-software-srs@net.bio.net From: hcwang@science.uottawa.ca (Huaichun Wang) Newsgroups: bionet.software.srs Subject: given swissProt IDs searching for CDS sequence Organization: University of Ottawa Message-ID: <3CDBECD1.A71DFF39@science.uottawa.ca> MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 5F22317B85 for ; Fri, 10 May 2002 16:59:24 +0100 (BST) X-Received: from alfred.cc.uottawa.ca (alfred.cc.uottawa.ca [137.122.6.40]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id B9F7617AB5 for ; Fri, 10 May 2002 16:59:21 +0100 (BST) X-Received: from science.uottawa.ca (sammy.science.uottawa.ca [137.122.43.76]) by alfred.cc.uottawa.ca (8.9.1/8.9.1) with ESMTP id LAA08326 for ; Fri, 10 May 2002 11:58:58 -0400 X-Received: from Spooler by science.uottawa.ca (Mercury/32 v3.31) ID MO00158C; 10 May 02 11:58:59 -0400 X-Received: from spooler by science.uottawa.ca (Mercury/32 v3.31); 10 May 02 11:58:46 -0400 X-Received: from science.uottawa.ca (137.122.147.108) by science.uottawa.ca (Mercury/32 v3.31) with ESMTP ID MG00158B; 10 May 02 11:58:43 -0400 X-Mailer: Mozilla 4.7 [en] (X11; I; SunOS 5.8 sun4u) X-Accept-Language: en X-To: bio-srs@net.bio.net, hcwang@science.uottawa.ca Date: Mon, 13 May 2002 10:41:21 +0100 (BST) Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Sir, I have a list of 5126 protein sequences with swissprot IDs or accession number and I want to get their corresponding coding sequences. Although I can search individually for the proteins using SRS and then get its EMBL entry from "Database cross-references", it is not practical for thousands of the sequences to be extracted. I wonder is there an automatic way to do this task? Huaichun Wang --- From owner-bio-srs@hgmp.mrc.ac.uk Thu May 30 15:19:49 2002 Return-Path: Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id D13C517C65 for ; Thu, 30 May 2002 15:19:48 +0100 (BST) Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 7A57717C62 for ; Thu, 30 May 2002 15:19:38 +0100 (BST) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 6015) id 2A2FD17C72; Thu, 30 May 2002 15:15:21 +0100 (BST) Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id CAB9D17C1D for ; Wed, 22 May 2002 07:31:35 +0100 (BST) Received: from mailbox2.ucsd.edu (mailbox2.ucsd.edu [132.239.1.54]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 7303017AEC for ; Wed, 22 May 2002 07:31:33 +0100 (BST) Received: from smtp3.google.com (smtp3.google.com [216.239.33.28]) by mailbox2.ucsd.edu (8.12.1/8.12.1) with ESMTP id g4M6VW4f016070 for ; Tue, 21 May 2002 23:31:32 -0700 (PDT) Received: from exins2.exo.google.com (exins2.prod.google.com [10.4.0.8]) by smtp3.google.com with ESMTP id XAA29046 for ; Tue, 21 May 2002 23:31:31 -0700 Received: from sjmm36.sj.google.com (sjmm36.prod.google.com [10.6.39.36]) by exins2.exo.google.com (8.9.3/8.9.3) with ESMTP id XAA02898 for ; Tue, 21 May 2002 23:31:31 -0700 Received: (from news@localhost) by sjmm36.sj.google.com (8.9.3/8.9.3) id XAA11497 for bionet-software-srs@moderators.isc.org; Tue, 21 May 2002 23:31:31 -0700 To: bionet-software-srs@moderators.isc.org From: bent.terp@cgb.ki.se (Bent Terp) Newsgroups: bionet.software.srs Subject: OpenPBS or PBSPro Organization: http://groups.google.com/ Message-ID: <19c79426.0205212231.5412aa7e@posting.google.com> Content-Type: text/plain; charset=ISO-8859-1 Content-Transfer-Encoding: 8bit X-Trace: posting.google.com 1022049091 11496 127.0.0.1 (22 May 2002 06:31:31 GMT) X-Complaints-To: groups-abuse@google.com NNTP-Posting-Date: 22 May 2002 06:31:31 GMT Date: Thu, 30 May 2002 15:15:21 +0100 (BST) Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Hi! Has anybody had success with adding either OpenPBS or PBSPro as batch queue systems for SRS? If there is a ready-made icarus file out there, I don't want to spend a lot of time writing one.... ;-) with kind regards, Bent Nagstrup Terp Systemadministrator Center for Genomics and Bioinformatics Karolinska Instituttet Berzelius Väg 35 171 77 Stockholm, Sweden