From owner-bio-srs@hgmp.mrc.ac.uk  Sat Aug 10 11:16:16 2002
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To: bionet-software-srs@moderators.isc.org
From: bent.terp@cgb.ki.se (Bent Terp)
Newsgroups: bionet.software.srs
Subject: Some images fail to show
Organization: http://groups.google.com/
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Hi again!

This time I'm having problems with images beyond the start-page.

On the startpage, images show up as expected, e.g. srsbar.gif. On the
"Library Select Page", images fail to appear, e.g. top-top.gif.

I fail to see the difference :-(

drwxr-xr-x   4 root     other       3072 Jun 10 09:27 ./www/images
drwxr-xr-x   2 root     other       2560 Jun 10 09:21
./www/images/default
-rw-r--r--   1 root     other       8199 Jun 10 09:27
./www/images/default/top-top.gif
-rw-r--r--   1 root     other       9943 Aug  3  1999
./www/images/srsbar.gif

with kind regards,
	Bent Nagstrup Terp
	Systemadministrator
	Center for Genomics and Bioinformatics
	Karolinska Instituttet
	Berzelius Väg 35
	171 77 Stockholm, Sweden


From owner-bio-srs@hgmp.mrc.ac.uk  Sat Aug 10 11:16:49 2002
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To: bionet-software-srs@moderators.isc.org
From: News <pmergen@ulb.ac.be>
Newsgroups: bionet.software.srs
Subject: Re: ITIS Database in Oracle script files?
Organization: VUB/ULB Computing Centre
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Hi,

We are using Itis too in our project of a biodiversity server for 
Belgium. For know we provide a direct link to the right page in several 
databases.
But we are working on integrating whole databases to our system when 
they are available. We will try this with Itis, but I do not think we 
will pass through Oracle but just index the .unl files provided

Best regards

Patricia Mergen Ph.D.
Project Manager
Belgian Biodiversity Information Facility
Université Libre de Bruxelles
Campus de la Plaine CP 257
Bâtiment NO, Bureau 4 O4 210 (Niveau 4)
Boulevard du Triomphe, entrée ULB 2
B-1050 Bruxelles
pmergen@ben.vub.ac.be
Tél. : +32 2 650 57 51 - Fax : +32 2 650 5124
http://bebif.ulb.ac.be
http://www.fundp.ac.be/urbo/theses.html


D Newsham wrote:

> Hi,
> 
> I am not sure if this is the right newsgroup or not... so apologize in
> advance if it is not!
> 
> I am working on a project to catalog several collections of scientific
> data.  I plan on using the taxonomy database from ITIS (Integrated
> Taxonomic Information System) as the taxa reference for this database
> and have downloaded the full database in Informix format from their
> site.
> 
> My question is - does anybody have the script files for converting
> this database to Oracle?  I emailed ITIS and they said they know it
> has been done but could not give me any references to people who have
> done it.
> 
> Thanks for any advice,
> Dina Newsham
> Northern Arizona University
> 
> 


From owner-bio-srs@hgmp.mrc.ac.uk  Sat Aug 10 11:17:02 2002
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To: bionet-software-srs@moderators.isc.org
From: Rene Heek <heek@zib.de>
Newsgroups: bionet.software.srs
Subject: defining an application with SRS6
Organization: Konrad-Zuse-Zentrum fuer Informationtechnik Berlin (ZIB)
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hi,

i've tried to setup a not predefined apllication in srs6, but failed
somehow. the documentation isn't very helpful (for me), maybe someone
can help me.

the apllication (they called it 'wessel') has no parameter in this stage
of development, so i reduced my AppOpp-set to jobName_option. this works
fine right now, the application is launched, produces some output-files,
which are copied back from where the application was launched. then srs
indices this file (temp_job1.<appname>) correctly (i can acces the
results via database selection in srs6). but srs doens't show me the
result right after executing my app ? when starting the indexscript
(temp_<appname>_1_index.csh) manually it says: 'error: databank has no
active read links, "WESSEL'. maybe the links are wrong:), but how do i
define them corractly ?

btw. has someone a idea how to get the $pwd variable, instead of
($Env:SRSROOT)/tmp/($ParStr:userId), in commandWrapper ? it works, but
this doesn't look very elegant to me. i've tried ($Env:PWD) but this
won't work on my machine.

thanks a lot 

rene heek

here my definitions:
wessel.i

#
# almost like genbank ...
#

$WESSEL_DB=$Library:[WESSEL group:$APPLICATION_LIBS 
  printName:'Wessel Results'
  parallelType:filesSize partSizeKb:200000 
  defaultView:$Entries_View
  defaultEntryView:$GenbankEntry_View
  entryViews:{$Entries_View $GenbankEntry_View}
  format:$GENBANK_FORMAT cachesize:512 maxNameLen:16 type:user
  searchName:'*.wessel'
  links:{
    $Link:[$WESSEL_DB to:$GENBANKREL_DB     fromField:$DF_Accession 
toField:$DF_Accession weight:11]
  }
]

#
#
#

$WESSEL_APP=$Application:[Wessel
  launchFromTopPage:y
  title:'a tool to wessel' 
  resultDb:$WESSEL_DB
  options:{
    $jobName_Option
  }

  command: @{
    $opt.command = 
       |longcomp ($Env:SRSROOT)/tmp/($ParStr:userId) ($appl.outFile)
  }

  commandWrapper: @{
     |($opt.command)
     |echo 'ready'

  }

  comment:
          | a very wessel application.

]


From owner-bio-srs@hgmp.mrc.ac.uk  Mon Aug 12 13:23:22 2002
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To: bionet-software-srs@moderators.isc.org
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Subject: Chemical/Mechanical Engineer Wanted
From: "Anthony Moisidis" <amoisidis@calcet.com>
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CALCET Company

Entry-Level / Experienced Chemical or Mechanical Engineers Wanted

Our growing consulting firm currently has positions to be filled.  We serve
major clients in the Pharmaceutical, Bio-pharmaceutical and Petrochemical
industries.  Our projects include analysis and design, equipment
commissioning and troubleshooting, as well as validation testing.  Our
projects also include process validation for cutting-edge bioengineered
pharmaceutical products.

Entry-level and 2 to 5 years experience, detail-oriented engineers with
either a chemical (preferred) or Mechanical Engineering degree are
encouraged to apply.  Our current projects are in California (Bay Area and
LA), Massachusetts and overseas.  There are potential opportunities for
travel, including foreign travel.  Salary is negotiable.

For more details please contact Dr. Nicholas Moisidis at
nmoisidis@calcet.com <mailto:nmoisidis@calcet.com> or (510)352-0130.  Also
CC resume to ctong@calcet.com <mailto:ctong@calcet.com>.

You can also visit our home page at www.calcet.com <http://www.calcet.com>


From owner-bio-srs@hgmp.mrc.ac.uk  Fri Aug 16 09:30:02 2002
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CALCET Company

Entry-Level / Experienced Chemical or Mechanical Engineers Wanted

Our growing consulting firm currently has positions to be filled.  We serve
major clients in the Pharmaceutical, Bio-pharmaceutical and Petrochemical
industries.  Our projects include analysis and design, equipment
commissioning and troubleshooting, as well as validation testing.  Our
projects also include process validation for cutting-edge bioengineered
pharmaceutical products.

Entry-level and 2 to 5 years experience, detail-oriented engineers with
either a chemical (preferred) or Mechanical Engineering degree are
encouraged to apply.  Our current projects are in California (Bay Area and
LA), Massachusetts and overseas.  There are potential opportunities for
travel, including foreign travel.  Salary is negotiable.

For more details please contact Dr. Nicholas Moisidis at
nmoisidis@calcet.com <mailto:nmoisidis@calcet.com> or (510)352-0130.  Also
CC resume to ctong@calcet.com <mailto:ctong@calcet.com>.

Feel free to visit our web site at www.calcet.com <http://www.calcet.com>
for more information.


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UNIVERSITY OF MEDICINE AND DENTISTRY OF NEW JERSEY - SCHOOL OF PUBLIC HEALTH JOINS IN SPONSORING EVENT

The Second BioDefense Mobilization Conference & Exhibition will occur October 22-24, 2002 at Loews Philadelphia Hotel. Workshops on bioterrorism and biotechnology will be presented October 21. The lowest registration fees-$495 for public employees, elected officials, and academics ($695 for others)-apply through August 26. Program and registration information is available at www.bio-defense.org. Event co-sponsors include: 

- The University of Medicine and Dentistry of New Jersey - School of Public Health (UMDNJ-SPH), with Rutgers, The State University of New Jersey; New Jersey Institute of -Technology; and the Public Health Research Institute
- Center for Biodefense, New Jersey Medical School
- Homeland Defense Journal
- Homeland Defense Technology Council
- Consultants in Disease and Injury Control

The involvement of the UMDNJ-SPH is significant because it played such a strong role in dealing with last year's acts of terrorism, including the World Trade Center and the anthrax attacks. School staff trained many Port Authority staff and rendered technical assistance immediately after the disaster. Other assistance was provided to the main Trenton Post Office. In addition, more than 25 SPH faculty members with a wide range of expertise have been assembled to investigate and respond to bioterror events.

CALL FOR PRESENTATIONS
All individuals registered for the conference are invited to submit an abstract for either a breakout talk (by Sept. 15) or poster presentation (until Oct. 15) for any of the tracks below. See Call for Presentations at www.bio-defense.org for details.

CONFERENCE TRACKS
- Public Safety & Responder Protection		
- Terrorism Law & Policy		
- Workplace Preparedness & the Built Environment 	
- Science & Technology	
- Public Health & Private Medicine			
- Communications & Training

FEATURED SPEAKERS
Dr. William Halperin, Chair and Professor, Department of Preventive and Community Medicine, New
Jersey Medical School; co-author of Public Health Surveillance

Sergei Popov, Senior Scientist, Advanced Biosystems; former Soviet weapons designer

George Strait, Media Consultant and former ABC Health/Medical Correspondent

A.D. Vickery, Chair, InterAgency Board for Equipment Standardization and InterOperability; Deputy Chief, Special Operations, Seattle Fire Department

Dr. Leah Ziskin, Associate Dean, Stratford/Camden Campus, School of Public Health, University of Medicine and Dentistry of New Jersey

Nancy Connell, Director, Center for Biodefense; New Jersey School of Medicine; Associate Professor of Microbiology and Molecular Genetics, University of Medicine and Dentistry of New Jersey

Terry O'Brien, former Assistant Attorney General, State of Minnesota; Appointee, Cantigny Conference on State Emergency Health Powers and the Bioterrorism Threat

Col. Danny McKnight, U.S. Army (retired), commander of the ground convoy in the initial Black Hawk Down assault, on "The Price of Preparedness and the Cost of Panic"

Murray Cohen, President, Consultants in Disease and Injury Control; member, federal bioterrorism task forces; former CDC epidemiologist

Mitchel Rosen, Director, Office of Public Health Practice, University of Medicine and Dentistry of New Jersey - School of Public Health

Dr. Victor Sidel, Professor of Social Medicine, Montefiore Medical Center and Albert Einstein College of Medicine; former president, American Public Health Association

Brendan McCluskey, Deputy Director/Director of Training and Education, Center for Biodefense, New Jersey School of Medicine

Dr. David Franz, Vice President, Chemical and Biological Defense Division, Southern Research Institute; former commander, USAMRIID (Bioterrorism Workshop only)

The unthinkable now seems inevitable. 
Preparedness is our only defense.

REGISTER NOW! EXHIBIT! CO-SPONSOR!
Register by Aug. 26 and qualify for early bird rates of $495 for public employees, elected officials, and academics, $695 for others. Register online, at www.bio-defense.org. If your organization provides products or services for homeland defense, learn about exhibitor and sponsor opportunities at www.bio-defense.org. 

If you are responsible for any element of biodefense, 
this is the one meeting you don't want to miss!

Please pass this announcement on to others.

www.bio-defense.org

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To: bionet-software-srs@moderators.isc.org
From: News <pmergen@ulb.ac.be>
Newsgroups: bionet.software.srs
Subject: Re: Some images fail to show
Organization: VUB/ULB Computing Centre
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Sender: owner-bio-srs@hgmp.mrc.ac.uk
Precedence: bulk

Is this a standard install (with "srs6" as name of root directory).

If not, check in the topgif definition in srspage.i, I think, if the bas 
path is well defined as srs6, or your name of basepath

afterthat, a 'icarus srspage.i' would be more than welcome.

Hope this helps

Bye



Bent Terp wrote:

> Hi again!
> 
> This time I'm having problems with images beyond the start-page.
> 
> On the startpage, images show up as expected, e.g. srsbar.gif. On the
> "Library Select Page", images fail to appear, e.g. top-top.gif.
> 
> I fail to see the difference :-(
> 
> drwxr-xr-x   4 root     other       3072 Jun 10 09:27 ./www/images
> drwxr-xr-x   2 root     other       2560 Jun 10 09:21
> ./www/images/default
> -rw-r--r--   1 root     other       8199 Jun 10 09:27
> ./www/images/default/top-top.gif
> -rw-r--r--   1 root     other       9943 Aug  3  1999
> ./www/images/srsbar.gif
> 
> with kind regards,
> 	Bent Nagstrup Terp
> 	Systemadministrator
> 	Center for Genomics and Bioinformatics
> 	Karolinska Instituttet
> 	Berzelius Väg 35
> 	171 77 Stockholm, Sweden
> 
> 


