From owner-bio-srs@hgmp.mrc.ac.uk Fri Sep 6 09:59:33 2002 Return-Path: Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with SMTP id 6CD5817C8A for ; Fri, 6 Sep 2002 09:59:31 +0100 (BST) Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 94A2E17A8B for ; Fri, 6 Sep 2002 09:59:25 +0100 (BST) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 6015) id C46C717C8A; Fri, 6 Sep 2002 09:58:48 +0100 (BST) Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 8787F17B68 for ; Thu, 5 Sep 2002 16:07:49 +0100 (BST) Received: from desdemone.pasteur.fr (desdemone.pasteur.fr [157.99.64.19]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id C951F17C1C for ; Thu, 5 Sep 2002 16:07:39 +0100 (BST) Received: (from news@localhost) by desdemone.pasteur.fr (8.9.3/8.9.3/Debian 8.9.3-21) id RAA25605 for bionet-software-srs@net.bio.net; Thu, 5 Sep 2002 17:07:33 +0200 To: bionet-software-srs@net.bio.net From: Eric Deveaud Newsgroups: bionet.software.srs Subject: results from different bank Organization: Institut Pasteur Message-ID: Reply-To: edeveaud@pasteur.fr Mime-Version: 1.0 Content-Type: text/plain; charset=iso-8859-1 Content-Transfer-Encoding: 8bit X-Trace: desdemone.pasteur.fr 1031238453 25475 157.99.60.104 (5 Sep 2002 15:07:33 GMT) X-Complaints-To: usenet@pasteur.fr NNTP-Posting-Date: 5 Sep 2002 15:07:33 GMT User-Agent: slrn/0.9.7.3 (Linux) Date: Fri, 6 Sep 2002 09:58:48 +0100 (BST) X-Razor-id: 777a36f579155dc553e6a44bd5d05de7048d05f5 Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Hi, I'm looking for a way to display the results of a same query on 2 banks. I'm currently working with 2 banks: bank1 a swisprot subset bank2 some personals annotation for the protein seuences of bank1 the bank2 format is derived from the swisprot one as shown here. ID xxxx AC yyyy MO some_data // when I query the bank1, I wish to display the content of the complete entrie of bank1 plus the MO line from bank2 corresponding to the same ID or AC. could someone did this, or could point me to some tip ?? Thank's Eric -- je me connecte grâce à Wanadoo et je trouve que la durée de vie des messages qu'ils ont imposé est trop court. J'y vois presque une forme de censure basée sur une conservation réduite des traces écrites. -+- Ed in GNU : Et gravé dans le marbre, ça ne serait pas mieux ? -+- From owner-bio-srs@hgmp.mrc.ac.uk Tue Sep 10 13:29:35 2002 Return-Path: Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with SMTP id 3531817A63 for ; Tue, 10 Sep 2002 13:29:35 +0100 (BST) Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 82F1117B71 for ; Tue, 10 Sep 2002 13:29:31 +0100 (BST) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 6015) id 1797817B7A; Tue, 10 Sep 2002 13:29:16 +0100 (BST) Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id EF5B017BD8 for ; Tue, 10 Sep 2002 10:06:20 +0100 (BST) Received: from chi6-2.relay.mail.uu.net (chi6-2.relay.mail.uu.net [199.171.54.99]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 7343217BCA for ; Tue, 10 Sep 2002 09:59:15 +0100 (BST) Received: from guppy.vub.ac.be by chi6sosrv11.alter.net with ESMTP (peer crosschecked as: guppy.vub.ac.be [134.184.129.2]) id QQnfrn26019 for ; Tue, 10 Sep 2002 08:59:13 GMT Received: from snic.vub.ac.be (snic.vub.ac.be [134.184.129.20]) by guppy.vub.ac.be (8.9.1b+Sun/3.17.1.ap (guppy)) id KAA29171; Tue, 10 Sep 2002 10:56:46 +0200 (MET DST) for Received: (news@localhost) by snic.vub.ac.be (8.9.3/%I%.0.ap (snic.test)) id KAA13550; Tue, 10 Sep 2002 10:59:10 +0200 (MET DST) for bionet-software-srs@moderators.isc.org To: bionet-software-srs@moderators.isc.org From: News Newsgroups: bionet.software.srs Subject: Re: results from different bank Organization: VUB/ULB Computing Centre Message-ID: <3D7DB535.8000302@ulb.ac.be> References: Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii; format=flowed Content-Transfer-Encoding: 7bit X-Trace: snic.vub.ac.be 1031648350 13548 164.15.129.187 (10 Sep 2002 08:59:10 GMT) X-Complaints-To: usenet@snic.vub.ac.be NNTP-Posting-Date: 10 Sep 2002 08:59:10 GMT User-Agent: Mozilla/5.0 (Windows; U; Windows NT 5.0; fr-FR; rv:0.9.4.1) Gecko/20020508 Netscape6/6.2.3 X-Accept-Language: fr-fr Date: Tue, 10 Sep 2002 13:29:16 +0100 (BST) X-Razor-id: 66d432c24f46300c4109c682143dab879618b414 Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk To do these kind of manipulations the tool "Virtual Library" is the best to use. You put bank 1 and two in a virtual library and they appear as one with all their field. But to enable querries with a correct result they must have the same format and common field entries. It should work with ID or AC. EMBL is using that system to update their bank if you want to see an example best regards Pat and Johan Eric Deveaud wrote: > Hi, > > I'm looking for a way to display the results of a same query on 2 banks. > > I'm currently working with 2 banks: > > bank1 a swisprot subset > bank2 some personals annotation for the protein seuences of bank1 > the bank2 format is derived from the swisprot one as shown here. > ID xxxx > AC yyyy > MO some_data > // > > when I query the bank1, I wish to display the content of the complete > entrie of bank1 plus the MO line from bank2 corresponding to the > same ID or AC. > > could someone did this, or could point me to some tip ?? > > Thank's > > Eric > From owner-bio-srs@hgmp.mrc.ac.uk Thu Sep 19 16:54:25 2002 Return-Path: Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with SMTP id 4E09617AF6 for ; Thu, 19 Sep 2002 16:54:24 +0100 (BST) Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id A8F7A17C1F for ; Thu, 19 Sep 2002 16:54:19 +0100 (BST) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 6015) id DC3CB17C14; Thu, 19 Sep 2002 16:54:12 +0100 (BST) Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 5980217AB0 for ; Wed, 18 Sep 2002 23:38:15 +0100 (BST) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 60001) id EC1CB17A96; Wed, 18 Sep 2002 23:38:14 +0100 (BST) To: bionet-software-srs@net.bio.net From: willy.valdivia@ndsu.nodak.edu ("Willy Valdivia Granda") Newsgroups: bionet.software.srs Subject: RE: Second Virtual Conference on Genomics and Bioinformatics Organization: BIOSCI/MRC Human Genome Mapping Project Resource Centre Message-ID: References: MIME-Version: 1.0 Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: 7bit X-Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id EE65417ACB for ; Wed, 18 Sep 2002 23:38:11 +0100 (BST) X-Received: from smtp1.ndsu.NoDak.edu (smtp1.ndsu.NoDak.edu [134.129.111.146]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id D7B0617AB0 for ; Wed, 18 Sep 2002 23:38:10 +0100 (BST) X-Received: from datasurg14 (ndas230.ndsu.NoDak.edu [134.129.110.235]) by smtp1.ndsu.NoDak.edu (8.11.6/8.11.6) with SMTP id g8IMc9532634 for ; Wed, 18 Sep 2002 17:38:09 -0500 X-To: X-Priority: 3 (Normal) X-MSMail-Priority: Normal X-Mailer: Microsoft Outlook IMO, Build 9.0.2416 (9.0.2910.0) X-MimeOLE: Produced By Microsoft MimeOLE V6.00.2600.0000 X-Importance: Normal X-In-Reply-To: Date: Thu, 19 Sep 2002 16:54:12 +0100 (BST) X-Razor-id: ebbf5633a043df548881a6418e88069cd1cd14e8 Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Hello All, We are a few days away from the Second Virtual Conference. Thank you all for your support of the conference, especially to the organizers in the cities below. These places will be featuring the conference both real player live and Access Grid versions. In these sites you will be able to interact with other researchers attending the Virtual Conference. There are not registration fees to particpate in the conference Willy Valdivia Granda Founder of the Virtual Conference on Genomics and Bioinformatics The registration pages. http://www.ndsu.nodak.edu/virtual-genomics/locations_2002.htm Conference program: http://www.ndsu.nodak.edu/virtual-genomics/Conference_Schedule_2002.htm Please forward this link to the interested parties. Details about the conference are available at: Location Seat Capacity Alberta, Canada 65 Albuquerque, New Mexico, USA 40 Amsterdam, Netherlands 10 Arlington, Virginia, USA 20 Berkeley, California, USA 30 Bologna, Italy 20 Boston, Massachusetts, USA 16 Cali, CIAT Colombia 60 Cali, CIDEM Colombia 20 Champaing, Illinois, USA 24 Chennai, India 30 Columbus, Ohio, USA 50 Fargo, North Dakota, USA 300 Florida, USA 15 Grand Forks, North Dakota, USA 28 Hiroshima, Japan 12 Honolulu, Hawaii, USA 20 Houghton, Michigan, USA 25 Huntington, West Virginia, USA 30 Kelantan, Malaysia 50 Kuala Lumpur, Malaysia 60 Lawrence, Kansas, USA 60 Lexington, Kentucky, USA 35 Lima, Peru 10 Lincoln, Nebraska, USA 14 Lund, Sweden 20 Manchester, United Kigdom 20 Nanyang, Singapore 12 Orono, Maine, USA 10 Penang, Malaysia 15 Pune, India 40 Rio de Janeiro, Brasil 30 Riverside, California, USA 30 Saint Louis, Missouri, USA 25 San Diego, California USA 15 San Juan, Puerto Rico 30 San Luis de Potosi, Mexico 30 Stillwater, Oklahoma, USA 30 Taipei, Taiwan 30 Tamilnadu, India 100 University Park, Pennsylvania, USA 12 Upper Montclair, New Jersey, USA 30 West Lafayette, Indiana USA 24 ---