From owner-bio-srs@hgmp.mrc.ac.uk Thu Jun 26 15:56:11 2003 Return-Path: X-Original-To: bio-srs-outgoing Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with SMTP id C9D817D1B1 for ; Thu, 26 Jun 2003 15:56:11 +0100 (BST) X-Original-To: bio-srs-list@hgmp.mrc.ac.uk Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 51BF27D1FF for ; Thu, 26 Jun 2003 15:56:11 +0100 (BST) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 6015) id A420A7D1B1; Thu, 26 Jun 2003 15:56:10 +0100 (BST) X-Original-To: bionet-software-srs@net.bio.net Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id E7E2C7D2A9 for ; Thu, 26 Jun 2003 05:18:52 +0100 (BST) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 60001) id 3D9607D19B; Thu, 26 Jun 2003 05:18:52 +0100 (BST) To: bionet-software-srs@net.bio.net From: t.lim@auckland.ac.nz (Tiong lim) Newsgroups: bionet.software.srs Subject: setup file for pir (codata) database on SRS7.1 Organization: Engineering Science Message-ID: <3EFA7402.D577D45C@auckland.ac.nz> MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Original-To: bio-srs@net.bio.net X-Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id C5F457D2A9 for ; Thu, 26 Jun 2003 05:18:50 +0100 (BST) X-Received: from mailhost2.auckland.ac.nz (unknown [130.216.1.4]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 7F4107D2A5 for ; Thu, 26 Jun 2003 05:18:45 +0100 (BST) X-Received: from mailhost.auckland.ac.nz (IDENT:mirapoint@mailhost [130.216.191.61]) by mailhost2.auckland.ac.nz (8.12.9/8.12.9/8.12.9-ua) with ESMTP id h5Q4Ig8W006697 for ; Thu, 26 Jun 2003 16:18:43 +1200 (NZST) X-Received: from esu1.auckland.ac.nz (esu1.auckland.ac.nz [130.216.208.1]) by mailhost.auckland.ac.nz (Mirapoint Messaging Server MOS 3.3.5-GR) with ESMTP id ARM03335; Thu, 26 Jun 2003 16:18:13 +1200 (NZST) X-Received: from auckland.ac.nz (esu27 [130.216.208.27]) by esu1.auckland.ac.nz (SGI-8.12.5/8.12.5) with ESMTP id h5Q4IBRS698916; Thu, 26 Jun 2003 16:18:11 +1200 (NZST) X-Mailer: Mozilla 4.8C-SGI [en] (X11; U; IRIX 6.5 IP32) X-Accept-Language: en X-To: bio-srs@net.bio.net Date: Thu, 26 Jun 2003 15:56:10 +0100 (BST) Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk I am trying to add the pir (codata) database to SRS 7.1 but it looks like the default pir.i ,pir.is are for GCG format . Is there a codata version somewhere ? thanks Tiong --- From owner-bio-srs@hgmp.mrc.ac.uk Fri Jun 27 19:14:44 2003 Return-Path: X-Original-To: bio-srs-outgoing Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with SMTP id E41577D225 for ; Fri, 27 Jun 2003 19:14:43 +0100 (BST) X-Original-To: bio-srs-list@hgmp.mrc.ac.uk Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 737CD7D2B9 for ; Fri, 27 Jun 2003 19:14:43 +0100 (BST) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 6015) id DF5807D225; Fri, 27 Jun 2003 19:14:42 +0100 (BST) X-Original-To: bionet-software-srs@net.bio.net Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id BEA847D31A for ; Fri, 27 Jun 2003 14:57:19 +0100 (BST) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 60001) id 45DAF7D323; Fri, 27 Jun 2003 14:57:19 +0100 (BST) To: bionet-software-srs@net.bio.net From: gilbertd@bio.indiana.edu (Don Gilbert) Newsgroups: bionet.software.srs Subject: Re: setup file for pir (codata) database on SRS7.1 Organization: Biology, Indiana University - Bloomington Message-ID: <200306271357.h5RDvHq00235@cricket.bio.indiana.edu> References: <3EFA7402.D577D45C@auckland.ac.nz> X-Original-To: bio-srs@net.bio.net X-Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id DF43B7D31A for ; Fri, 27 Jun 2003 14:57:17 +0100 (BST) X-Received: from cricket.bio.indiana.edu (cricket.bio.indiana.edu [129.79.225.189]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id DF3B57D2F1 for ; Fri, 27 Jun 2003 14:57:16 +0100 (BST) X-Received: (from gilbertd@localhost) by cricket.bio.indiana.edu (8.11.6+Sun/8.11.6) id h5RDvHq00235; Fri, 27 Jun 2003 08:57:17 -0500 (EST) X-To: bio-srs@net.bio.net X-Newsgroups: bionet.software.srs Date: Fri, 27 Jun 2003 19:14:42 +0100 (BST) Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Tiong, You can find my icarus parsers for the CODATA format of PIR at the "SRS Description" section of IUBio Archive's SRS server: http://iubio.bio.indiana.edu/srs6bin/cgi-bin/wgetz?-page+LibInfo+-lib+PIR -- Don Gilbert -- -- d.gilbert--bioinformatics--indiana-u--bloomington-in-47405 -- gilbertd@bio.indiana.edu--http://marmot.bio.indiana.edu/ --- From owner-bio-srs@hgmp.mrc.ac.uk Fri Jun 27 19:14:51 2003 Return-Path: X-Original-To: bio-srs-outgoing Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with SMTP id 4A06E7D27C for ; Fri, 27 Jun 2003 19:14:51 +0100 (BST) X-Original-To: bio-srs-list@hgmp.mrc.ac.uk Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id CC2A97D0DF for ; Fri, 27 Jun 2003 19:14:50 +0100 (BST) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 6015) id EF9ED7D225; Fri, 27 Jun 2003 19:14:49 +0100 (BST) X-Original-To: bionet-software-srs@net.bio.net Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 2C8BC7D327 for ; Fri, 27 Jun 2003 14:57:25 +0100 (BST) Received: from mailbox4.ucsd.edu (mailbox4.ucsd.edu [132.239.1.56]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id EF2617D32C for ; Fri, 27 Jun 2003 14:57:22 +0100 (BST) Received: from plounts.uits.indiana.edu (plounts.uits.indiana.edu [129.79.1.73]) by mailbox4.ucsd.edu (8.12.9/8.12.3) with ESMTP id h5RDvGim051217 for ; Fri, 27 Jun 2003 06:57:17 -0700 (PDT) Received: from hood.uits.indiana.edu (newsfeeder.indiana.edu [129.79.1.19]) by plounts.uits.indiana.edu (8.12.9/8.12.9/IUPO) with ESMTP id h5RDvEhM014263 for ; Fri, 27 Jun 2003 08:57:15 -0500 (EST) Received: (from news@localhost) by hood.uits.indiana.edu (8.11.6/8.11.6) id h5RDvFE22819 for bionet-software-srs@moderators.isc.org; Fri, 27 Jun 2003 08:57:15 -0500 To: bionet-software-srs@moderators.isc.org From: gilbertd@bio.indiana.edu (Don Gilbert) Newsgroups: bionet.software.srs Subject: Re: setup file for pir (codata) database on SRS7.1 Organization: Biology, Indiana University - Bloomington Message-ID: References: <3EFA7402.D577D45C@auckland.ac.nz> X-Trace: hood.uits.indiana.edu 1056722234 22818 129.79.225.189 (27 Jun 2003 13:57:14 GMT) X-Complaints-To: news-admin@indiana.edu NNTP-Posting-Date: Fri, 27 Jun 2003 13:57:14 +0000 (UTC) X-Spamscanner: mailbox4.ucsd.edu (v1.2 May 26 2003 01:55:38, -0.5/5.0 2.55) X-MailScanner: PASSED (v1.2.7 43662 h5RDvGim051217 mailbox4.ucsd.edu) Date: Fri, 27 Jun 2003 19:14:49 +0100 (BST) Sender: owner-bio-srs@hgmp.mrc.ac.uk Precedence: bulk Tiong, You can find my icarus parsers for the CODATA format of PIR at the "SRS Description" section of IUBio Archive's SRS server: http://iubio.bio.indiana.edu/srs6bin/cgi-bin/wgetz?-page+LibInfo+-lib+PIR -- Don Gilbert -- -- d.gilbert--bioinformatics--indiana-u--bloomington-in-47405 -- gilbertd@bio.indiana.edu--http://marmot.bio.indiana.edu/