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Date: Sat, 13 Sep 1997 02:00:04 -0700
From: BIOSCI Administrator <biohelp>
Message-Id: <199709130900.CAA11378@net.bio.net>
To: bioherv@net.bio.net
Subject: BIOSCI/bionet miniFAQ & Fundraiser

(LAST REVISION: 30-JUL-95)

This BIOSCI "miniFAQ" is designed to answer the questions that come up
the *most frequently*.  The main BIOSCI FAQ (Frequently Asked
Questions) is accessible on the World Wide Web at URL
http://www.bio.net/.

If you can not find an answer to your question in this or other
documentation, the BIOSCI technical support staff answers e-mail
queries sent to

		       biosci-help@net.bio.net

We can only answer questions about the use of the newsgroups and
mailing lists.  We unfortunately do not have the staff to do Internet
information searches or answer scientific questions.  Please post
those to the appropriate BIOSCI/bionet newsgroups.


	Contents:
	--------
	0) BIOSCI NEEDS YOUR SUPPORT!!

	1) Using the WWW to access the BIOSCI/bionet newsgroups.

	2) What to do about "spams," i.e., junk mail, ads, etc.

	3) Examples of subscribing and unsubscribing to the mailing lists.

	4) The BIOSCI user address and research interest directory.


0) BIOSCI NEEDS YOUR SUPPORT!!
------------------------------
BIOSCI's government funding has been expended, and we are now
operating solely from advertising revenue that we have raised from our
Web site at http://www.bio.net/.  We need just a few minutes of your
time to help us serve you.

You can do two important things which will take very little time for
you individually and will immensely help us continue to help you.

First, please use our WWW system at http://www.bio.net/ to access the
archives.  You can post or reply to messages via your Web browser as
described in item #1 below.  Your usage helps attract sponsors. If you
contact any of our sponsors, please be sure to thank them for
supporting BIOSCI. It is critical for them to get this feedback if
they are to continue their sponsorship for the long term.

Second, if you work for a company or organization that provides
products or services of interest to the biology community, please pass
this message on to your marketing or marketing communications
department or other appropriate group.  Please ask them to help
support BIOSCI by sponsoring our Web site and explain the uses and
benefits of the system to the biology community. If they are
interested, they can then contact us for further information at our
tech support address, biosci-help@net.bio.net.


1) Using the WWW to access the BIOSCI/bionet newsgroups.
--------------------------------------------------------
As of 10 December 1995, all BIOSCI/bionet full newsgroups are
accessible through the World Wide Web (WWW) at URL http://www.bio.net.
One can read and reply publicly or privately to both recent postings
and archived messages through one's Web browser if it is configured
properly to send e-mail.  Each newsgroup is equipped with its own WAIS
index.  The main BIOSCI home page also has access to the BIO-JOURNALS
Table of Contents database WAIS index and the BIOSCI user address
database described in another item further below.


2) What to do about "spams," i.e., junk mail, ads, etc.
-------------------------------------------------------
BIOSCI is a set of parallel USENET newsgroups (the "bionet" groups),
mailing lists, and a hypermail archive at URL http://www.bio.net/.
The same postings are distributed on all media (except for a small
number of mailing-list-only groups at net.bio.net).  Unfortunately it
is becoming a despicable practice on the Internet (by a few people out
to make a fast buck) to do automated mass postings to thousands of
newsgroups and mailing lists.  These attempts to grab free advertising
are refered to as "spams" in the usual, somewhat boneheaded, net
terminology.  USENET is more susceptible to this practice, and many
spams originate on the USENET groups and then are passed on to the
mailing lists.  However, spammers also get lists of mailing addresses
and hit these too, so neither medium is immune.

What should you do personally if you get junk mail?
---------------------------------------------------
Just delete it and move on without reading it further.  Filing a
protest is becoming increasingly useless because spammers are often
disguising the addresses where the messages are sent from.  Unless you
really understand Internet mail systems, your attempt at protest by
sending replies to the message will often end up being sent to the
address of an innocent person that the spammer is victimizing.

What can BIOSCI/bionet do to protect its newsgroups?
----------------------------------------------------
The only solution currently available is to moderate the newsgroup.
If this newsgroup is already moderated, then you are in good shape.
Moderation protects the USENET distribution from about 95% of the
spams that are being sent to date and protects the mailing lists
completely.  Moderation means, however, that someone has to take the
time to review each message before it goes out.  We have set up
software here that simply allows the moderator to forward to an
address at net.bio.net messages that (s)he wishes to have distributed.
This takes no more time than that needed to read the message and pass
it on, say about 1 min. per message.

Most newsgroups currently have a discussion leader who is responsible
for their newsgroup.  The discussions leaders and their e-mail
addresses are listed in the BIOSCI Information Sheet which is
available on the Web at http://www.bio.net/.  If a newsgroup is being
hit with too many junk postings, please contact the discussion leader
for that group and see if there is interest in moderating the group.
Please do not assume that by simply posting a complaint to the
newsgroup itself, anyone on the BIOSCI staff will act on your
complaint.  With close to 100 newsgroups to run, the BIOSCI staff has
to rely on the discussion leaders of each newsgroup to report problems
directly to us at biosci-help@net.bio.net.

We will moderate any of our newsgroups if the discussion leader tells
us that the readership of the group wishes to do so and if a moderator
is willing to do the work.  For most BIOSCI/bionet groups, this
entails only a few minutes of work each day.

Moderating a newsgroup will resolve probably 95% of the junk postings
on the USENET distribution.  Unfortunately there are easy ways for
determined spammers to override the moderation mechanism on USENET,
but we can protect our e-mail subscribers from unwanted postings if
the newsgroup is moderated.  You can also access our newsgroups over
the WWW at URL http://www.bio.net.  While this Web interface will not
stop spammers from trying to post to the groups, this will give you
yet another way, besides using USENET news, to keep the junk out of
your personal mail files.  For those of you with local USENET news
systems, the Web interface will also give you faster access to new
newsgroups and recent postings.


3) Examples of subscribing and unsubscribing to the mailing lists.
------------------------------------------------------------------
PLEASE NOTE: The BIOSCI management does NOT act on
subscription/unsubscription requests that are posted improperly to the
newsgroups and mailing lists.  People who do this only bother everyone
on the lists to no avail.  Please be sure to follow the proper
procedures below.

Gory details are in the BIOSCI Information sheets on the Web at
http://www.bio.net.  Below we give an example utilizing the
METHODS-AND-REAGENTS list at both of our two BIOSCI sites:

Users in the Americas and Pacific Rim countries who use the BIOSCI
------------------------------------------------------------------
node at computer net.bio.net:
----------------------------

A) Determine the "listname" which is the <=8 character mail address
                                         ^^^^^^^^^^^^^
   for the group.  These can be found in the BIOSCI Info. Sheet.  For
   the METHODS-AND-REAGENTS group the mailing address is
   methods@net.bio.net.  The listname is the portion of the address to
   the left of the @ sign, i.e., "methods".  The listname is used with
   the "subscribe" and "unsubscribe" commands illustrated below.

B) Mail all commands in the body of a mail message addressed to
   biosci-server@net.bio.net.  Do NOT send commands to the newsgroup
   posting addresses!  Leave the Subject: line blank, any text on it
   will be ignored.

C) In the body of your message put one or more of the following
   commands with an "end" command on the last line, e.g.,

   subscribe methods
   unsubscribe methods
   end

   Do NOT put your e-mail address or other text on these lines.  The
   server only allows you to cancel your subscription if the address
   on your mail header matches the address on our mailing list.
   Please ask for help at biosci-help@net.bio.net if your address has
   changed, e.g., if you know you are on the list but the server tells
   you that you are not a member.


Users in Europe, Africa, and Central Asia who use the BIOSCI node at
--------------------------------------------------------------------
computer daresbury.ac.uk (also known as dl.ac.uk):
-------------------------------------------------

To subscribe and unsubscribe to/from the BIOSCI lists, you need to
specify the full USENET newsgroup name with "bionet-news." prepended.
The USENET newsgroup names are listed in the BIOSCI Information sheet
on the Web at http://www.bio.net/.  For the METHODS-AND-REAGENTS list
the USENET newsgroup name is bionet.molbio.methds-reagnts, thus the
appropriate commands are

    sub bionet-news.bionet.molbio.methds-reagnts

    unsub bionet-news.bionet.molbio.methds-reagnts

These commands are included in a message addressed to mxt@dl.ac.uk,
NOT to the newsgroup mailing addresses.  As usual, include the text in
the body of the message as text on the Subject: line is ignored.

To unsubscribe from all the lists at the UK node, use

    unsub bionet-news

Please note that if the address in the list is different than the one
in your mail message header, you will not be able to unsubscribe by
this method. If you have problems, please mail biosci@daresbury.ac.uk.


4) The BIOSCI user address and research interest directory.
-----------------------------------------------------------
Please take this opportunity to add your name, address, and research
interest information to the BIOSCI User Address Database if you have
not already done so.

You can fill out the address form directly through our Web page at URL
http://www.bio.net/adrform.html.

The address database is reindexed nightly for WWW access (the URL is
http://www.bio.net/).  If you are not directly on the Internet but can
reach it by e-mail, please use our waismail server to access the user
directory.  waismail use is described above.  You can also request a
user address form by e-mail from biosci-help@net.bio.net.

Please check your database entry from time-to-time to see if your
address information is still up-to-date.  Because of our limited
personnel resources, we ask that you resubmit a *complete* form to
revise your entry; we only replace complete entries and do not have
resources to edit old forms.


From BIOSCI-REQUEST  Sun Sep 14 11:15:24 1997
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Date: Sun, 14 Sep 1997 20:03:52 +0200
To: bioherv@net.bio.net
From: Loewer@em.uni-frankfurt.de (Johannes Loewer)
Subject: HERV Cell paper

Dear Dixie and other HERVers,

My comments to the paper by Conrad et al. in Cell (90, 303, 1997) are:

1.     The FACS data presented in fig. 5 seems to demonstrate that cells trans-
        fected with a vector presumably expressing env of the HTDV/HERV-K provi-
        rus IDDMK(1,2)22 induce an expansion of V beta 7 specific T cells. This 
        looks like a superantigen effect. I look forward to an independent
confirma-
        tion.

2.     It would be interesting to know whether an IDDMK(1,2)22 coded protein is 
        expressed on the surface of transfected THP1 cells as the prototypic su-
        perantigen of MMTV is described as a transmembrane protein.

3.     The published sequence of IDDMK(1,2)22 is very close to the sequence of 
        the provirus HERV-K10. Therefore, the question arises whether other
provi-
        ruses of the HTDV/HERV-K family also code for a superantigen.

4.     Unfortunately, the sequences which are deposited in Genbank (accession 
        numbers AFO12327-AFO12337) are not accesssible until today (Sept. 14). 
        They should be released.

5.     It is claimed that on the basis of potential splice donor and splice
acceptor 
        sites IDDMK(1,2)22 is expected to produce two subgenomic mRNAs. Indeed, 
        we have described (in Northern blots and by sequencing, J.Virol. 69,
141, 
        1995) the production of subgenomic mRNAs by proviruses of the 
        HTDV/HERV-K family including the two types of mRNAs postulated for 
        IDDMK(1,2)22. I would like to know how (or with which program) the
splice 
        donor and splice acceptor sites were predicted, especially the most
down-
        stream acceptor site.

6.     I am pleased to notice that our method to detect unknown expressed
retrovi-
        ral sequences (R-U5-PCR, Virol. 192, 501, 1993) has been successfully 
        used (and to some extent further developed) by Schuepbach's group not 
        only for the description of IDDMK(1,2)22 but also for the detection
of en-
        dogenous avian retroviruses (EAV) in the supernatant of chicken cells 
        (J.Virol. 71, 3005, 1997).

7.     A general discussion is needed for the definition of what could be
claimed to 
        be a "novel mouse mammary tumor virus-related human endogenous retrovi-
        rus". Is a unique pattern of restriction enzyme cleavage sites and a
diver-
        gence from published sequences by 5%-10% sufficient to justify such a 
        claim? For me, IDDMK(1,2)22 is nothing else than another proviral
sequence 
        out of the fifty or so of the HTDV/HERV-K family known to be present
in the 
        human genome. Interestingly, the unique EAV sequence detected in the su-
        pernatant of chicken cells was not claimed to be a novel virus by
Schuep-
        bach et al.

8.     During the Mannheim Symposium we have proposed and there was agree-
        ment to give the name "HTDV/HERV-K" to the HERV-K family the prototype 
        of which is Ono's HERV-K10 sequence and which is expressed as HTDV 
        particles in human teratocarcinoma cells. So, this family can be
discrimi-
        nated by name from other HERV-K families whose sequences (e.g. HERV-
        K/C4) show only 70% homology to the HERV-K10 sequence

These comments are in addition to those sent by Jonas. I look forward to other 
contributions to this discussion.

Johannes Loewer
______________________________________________
Johannes Loewer
Tel.: +496103-772000 (office), +496103-67792 (home)
Fax: +496103-771252 (office), +496103-699737 (home)
Email: loewer@em.uni-frankfurt.de


From BIOSCI-REQUEST  Thu Sep 25 09:04:44 1997
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Date: Thu, 25 Sep 1997 09:05:23 -0800
To: bioherv@net.bio.net
From: dixie@unixg.ubc.ca (Dixie Mager)
Subject: HERV-K IDDM

Thanks to Clive P., Mark B., Jonas and Johannes for their comments on the
Cell paper. I agree that its an impressive piece of work and should help
the HERV field. Many of you may have seen the follow-up News and Views in
the August 28 issue of Nature by Benoist and Mathis.  I was surprised to
read their statement "The retrovirus had never previously been identified
but it shares homology with mouse mammary tumor viruses".  HERV-K is not
mentioned in their article!  Perhaps someone from the HERV-K field should
write a letter to Nature to set the record straight.  Any opinions?

Dixie

Dixie Mager, Ph.D.
Terry Fox Laboratory
B.C. Cancer Agency
601 W. 10th Avenue
Vancouver, B.C. V5Z1L3  Canada
phone: 604-877-6070 ext. 3185
fax: 604-877-0712



From BIOSCI-REQUEST  Thu Sep 25 14:10:59 1997
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Date: Thu, 25 Sep 1997 17:10:07 -0500 (EST)
From: boyd@auhs.edu
Subject: Re: HERV-K IDDM
In-reply-to: <v01540b03b0504768de73@[137.82.129.68]>
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To: Dixie Mager <dixie@unixg.ubc.ca>
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I agree... particularly since there are people currently trying to get a
bandwagon going regarding "MMTV-LIKE" HERVs/Human retroviruses(????) and
their involvement in other human disorders such as breast cancer. The
potential exists for this very interesting story to be misused for
sales pitches. Maybe we should indeed draft a clarifiying note.

Best wishes

Boyd

______________________________________________________________________________ 
     
Mark Boyd
Department of Medicine, Mail stop 412,
Allegheny University,
Broad & Vine,
Philadelphia PA 19102-1192

Tel 215 762 8659
Fax 215 762 8857

BOYD@auhs.edu  (from June 16th this will become boyd@auhs.edu)  
______________________________________________________________________________

"I can picture in my mind a world without war, a world without hate.
And I can picture us attacking that world, because they'd never expect it."


From BIOSCI-REQUEST  Fri Sep 26 08:42:56 1997
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From: jonas.blomberg@alinks.se
Message-Id: <199709261542.IAA01240@net.bio.net>
Date: Fri, 26 Sep 1997 17:44:01 +0100
To: dixie@unixg.ubc.ca, bioherv@net.bio.net
Subject: Re: HERV-K IDDM
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Dixie,

I agree, we should make ourselves heard=2E We risk getting overrun=20
by new converts to HERVism=2E

Did I miss Clive's comment? Could someone resend it to me?

Jonas

*************< Jonas=2EBlomberg@alinks=2Ese >************
 Jonas Blomberg, M=2ED=2E, Ph=2ED=2E
 professor, Section of Virology,
 Department of Clinical Microbiology=20
 University of Uppsala
 Academic Hospital
 S-751 85 Uppsala, Sweden

 (Street address: Dag Hammarskjolds v=2E 17)

 Voice: +46-18-665593 (office) +46-40-412653 (home)=20
 Fax:   +46-18-559157 (office) +46-40-411165 (home)
 Pager: +46-746498980         =20
*****************************************************
                                   =2E=2E=2EA DOCMAIL MESSAGE!

From BIOSCI-REQUEST  Fri Sep 26 16:01:21 1997
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Date: Fri, 26 Sep 1997 19:00:43 -0500 (EST)
From: boyd@auhs.edu
Subject: Re: Re[2]: HERV-K IDDM
In-reply-to: <01IO3IEHCD1G000Z0Y@mailhub.auhs.edu>
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On Fri, 26 Sep 1997 jonas.blomberg@alinks.se wrote:

> Mark,
> 
> Is this an attack on me and Patrik?? 


Not at all, 
My comment was directed at the questionable "novelty" and the possibility
that other unscrupulous persons might try to connect "novel MMTV-like"
with e.g. a novel human retrovirus that has been claimed to be involved in
human mammary cancer.



>MMTV-like is not a misnomer. 

see above

> The most well-studied exogenous member of the group is an 
> acceptable point of reference, as we have discussed for many 
> years. What attempts to misuse the interesting story are there?
> 
> I think this new twist on the superantigen story shows that the 
> MMTV parabola is relevant.
> 
> Jonas
> 
> ______________________________ Reply Separator _________________________________
> Subject: Re: HERV-K IDDM
> Author:  MIME:boyd@auhs.edu at INTERNET 
> Date:    1997-09-25 23.23
> 
> 
> 
> I agree... particularly since there are people currently trying to get a 
> bandwagon going regarding "MMTV-LIKE" HERVs/Human retroviruses(????) and 
> their involvement in other human disorders such as breast cancer. The 
> potential exists for this very interesting story to be misused for
> sales pitches. Maybe we should indeed draft a clarifiying note.
> 
> Best wishes
> 
> Boyd
> 
> ______________________________________________________________________________
> 
> 
> Mark Boyd
> Department of Medicine, Mail stop 412, 
> Allegheny University,
> Broad & Vine,
> Philadelphia PA 19102-1192
> 
> Tel 215 762 8659
> Fax 215 762 8857
> 
> BOYD@auhs.edu  (from June 16th this will become boyd@auhs.edu)  
> ______________________________________________________________________________
> 
> "I can picture in my mind a world without war, a world without hate.
> And I can picture us attacking that world, because they'd never expect it."
> 
> 
> 
> *************< Jonas.Blomberg@alinks.se >************
>  Jonas Blomberg, M.D., Ph.D.
>  professor, Section of Virology,
>  Department of Clinical Microbiology 
>  University of Uppsala
>  Academic Hospital
>  S-751 85 Uppsala, Sweden
> 
>  (Street address: Dag Hammarskjolds v. 17)
> 
>  Voice: +46-18-665593 (office) +46-40-412653 (home) 
>  Fax:   +46-18-559157 (office) +46-40-411165 (home)
>  Pager: +46-746498980          
> *****************************************************
>                                    ...A DOCMAIL MESSAGE!
> 

______________________________________________________________________________ 
     
Mark Boyd
Department of Medicine, Mail stop 412,
Allegheny University,
Broad & Vine,
Philadelphia PA 19102-1192

Tel 215 762 8659
Fax 215 762 8857

BOYD@auhs.edu  (from June 16th this will become boyd@auhs.edu)  
______________________________________________________________________________

"I can picture in my mind a world without war, a world without hate.
And I can picture us attacking that world, because they'd never expect it."




From BIOSCI-REQUEST  Sat Sep 27 04:04:49 1997
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From: jonas.blomberg@alinks.se
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Date: Sat, 27 Sep 1997 13:06:26 +0100
To: boyd@auhs.edu
Cc: bioherv@net.bio.net
Subject: Re[4]: HERV-K IDDM
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Mark,

>> Is this an attack on me and Patrik??=20
>
>Not at all,=20
>My comment was directed at the questionable "novelty" and the=20
>possibility that other unscrupulous persons might try to connect=20
>"novel MMTV-like" with e=2Eg=2E a novel human retrovirus that has=20
>been claimed to be involved in human mammary cancer=2E

I agree=2E

Jonas





______________________________ Reply Separator ____________________________=
_____
Subject: Re: Re[2]: HERV-K IDDM
Author:  MIME:boyd@auhs=2Eedu at INTERNET
Date:    1997-09-27 1=2E20


On Fri, 26 Sep 1997 jonas=2Eblomberg@alinks=2Ese wrote:

> Mark,
>=20
> Is this an attack on me and Patrik??=20


Not at all,=20
My comment was directed at the questionable "novelty" and the possibility=20
that other unscrupulous persons might try to connect "novel MMTV-like"=20
with e=2Eg=2E a novel human retrovirus that has been claimed to be involved=
 in=20
human mammary cancer=2E



>MMTV-like is not a misnomer=2E=20

see above

> The most well-studied exogenous member of the group is an=20
> acceptable point of reference, as we have discussed for many=20
> years=2E What attempts to misuse the interesting story are there?=20
>=20
> I think this new twist on the superantigen story shows that the=20
> MMTV parabola is relevant=2E
>=20
> Jonas
>=20
> ______________________________ Reply Separator=20
_________________________________
> Subject: Re: HERV-K IDDM
> Author:  MIME:boyd@auhs=2Eedu at INTERNET=20
> Date:    1997-09-25 23=2E23
>=20
>=20
>=20
> I agree=2E=2E=2E particularly since there are people currently trying to=20=
get a=20
> bandwagon going regarding "MMTV-LIKE" HERVs/Human retroviruses(????) and=20
> their involvement in other human disorders such as breast cancer=2E The=20
> potential exists for this very interesting story to be misused for=20
> sales pitches=2E Maybe we should indeed draft a clarifiying note=2E
>=20
> Best wishes
>=20
> Boyd
>=20
>
___________________________________________________________________________=
___=20
>=20
>=20
> Mark Boyd
> Department of Medicine, Mail stop 412,=20
> Allegheny University,
> Broad & Vine,
> Philadelphia PA 19102-1192
>=20
> Tel 215 762 8659
> Fax 215 762 8857
>=20
> BOYD@auhs=2Eedu  (from June 16th this will become boyd@auhs=2Eedu) =20
>
___________________________________________________________________________=
___=20
>=20
> "I can picture in my mind a world without war, a world without hate=2E
> And I can picture us attacking that world, because they'd never expect it=2E=
"=20
>=20
>=20
>=20
> *************< Jonas=2EBlomberg@alinks=2Ese >************=20
>  Jonas Blomberg, M=2ED=2E, Ph=2ED=2E
>  professor, Section of Virology,
>  Department of Clinical Microbiology=20
>  University of Uppsala
>  Academic Hospital
>  S-751 85 Uppsala, Sweden
>=20
>  (Street address: Dag Hammarskjolds v=2E 17)=20
>=20
>  Voice: +46-18-665593 (office) +46-40-412653 (home)=20
>  Fax:   +46-18-559157 (office) +46-40-411165 (home)=20
>  Pager: +46-746498980         =20
> *****************************************************
>                                    =2E=2E=2EA DOCMAIL MESSAGE!=20
>=20

___________________________________________________________________________=
___


Mark Boyd
Department of Medicine, Mail stop 412,=20
Allegheny University,
Broad & Vine,
Philadelphia PA 19102-1192

Tel 215 762 8659
Fax 215 762 8857

BOYD@auhs=2Eedu  (from June 16th this will become boyd@auhs=2Eedu) =20
___________________________________________________________________________=
___

"I can picture in my mind a world without war, a world without hate=2E
And I can picture us attacking that world, because they'd never expect it=2E=
"





*************< Jonas=2EBlomberg@alinks=2Ese >************
 Jonas Blomberg, M=2ED=2E, Ph=2ED=2E
 professor, Section of Virology,
 Department of Clinical Microbiology=20
 University of Uppsala
 Academic Hospital
 S-751 85 Uppsala, Sweden

 (Street address: Dag Hammarskjolds v=2E 17)

 Voice: +46-18-665593 (office) +46-40-412653 (home)=20
 Fax:   +46-18-559157 (office) +46-40-411165 (home)
 Pager: +46-746498980         =20
*****************************************************
                                   =2E=2E=2EA DOCMAIL MESSAGE!

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Date: Mon, 29 Sep 1997 10:35:36 -0500
From: ANDY MASON <AMason@ochsner.org>
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Subject: receiving HERV news
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I would like to recieve further information about HERVs through the
bioherv service.

How do I join up?

Andy Mason

