From owner-bio-matrix@net.bio.net Tue May 04 23:00:00 1993 Path: biosci!UH.EDU!Davison From: Davison@UH.EDU (Dan Davison) Newsgroups: bionet.molbio.bio-matrix Subject: Re: Question about 3d-based multiple alignment data Message-ID: <199305052220.AA23685@Menudo.UH.EDU> Date: 5 May 93 22:20:46 GMT References: <930505145458.2020dd19@scri.fsu.edu> Sender: daemon@net.bio.net Distribution: bionet Lines: 23 STRELETS@scri.fsu.edu said: > Is there anybody know about accessable databases (file compilations) > with protein (super)family alignments on the base (or taking into > account) 3d-structure information? The database is called NRL_3D, from PIR-International. It is available by anonymous FTP from ftp.bchs.uh.edu (129.7.2.43), in pub/gene-server/pir/pir_rel36/ascii/nrl* You can also search it by using the PIR search service; send a HELP message to fileserv@gunbrf.bitnet. dan -- dr. dan davison/dept. of biochemical and biophysical sciences/univ. of Houston/4800 Calhoun/Houston,TX 77204-5934/davison@uh.edu/DAVISON@UHOU "Without the voice of reason, every faith is its own curse" -- Sting Disclaimer: As always, I speak only for myself, and, usually, only to myself. From owner-bio-matrix@net.bio.net Tue May 04 23:00:00 1993 Path: biosci!SCRI.FSU.EDU!STRELETS From: STRELETS@SCRI.FSU.EDU Newsgroups: bionet.molbio.bio-matrix Subject: Question about 3d-based multiple alignment data Message-ID: <930505145458.2020dd19@scri.fsu.edu> Date: 5 May 93 18:54:58 GMT Sender: daemon@net.bio.net Distribution: bionet Lines: 10 I'm working on the correction methods development for multiple alignment algorithms. Is there anybody know about accessable databases (file compilations) with protein (super)family alignments on the base (or taking into account) 3d-structure information? Any references will be helpful.. Thank in advance, V.Strelets strelets@scri.fsu.edu From owner-bio-matrix@net.bio.net Tue May 04 23:00:00 1993 Path: biosci!BDT.FTPT.BR!adriano From: adriano@BDT.FTPT.BR (Adriano Cesar da Silva) Newsgroups: bionet.molbio.bio-matrix Subject: (none) Message-ID: <9305051209.AA00974@sabia.ftpt.br> Date: 5 May 93 09:09:05 GMT Sender: daemon@net.bio.net Distribution: bionet Lines: 1 Adriano Cesar da Silva From owner-bio-matrix@net.bio.net Wed May 12 23:00:00 1993 Path: biosci!JHUVMS.HCF.JHU.EDU!OGRADY From: OGRADY@JHUVMS.HCF.JHU.EDU ("Richard O'Grady, 410/516-6919") Newsgroups: bionet.molbio.bio-matrix Subject: Publication notice for ADVANCES IN COMPUTER METHODS... Message-ID: <01GY4R8GZDPE9ODGSU@JHUVMS.HCF.JHU.EDU> Date: 13 May 93 20:38:41 GMT Sender: daemon@net.bio.net Distribution: bionet Lines: 102 ---------------------------------------------------------------------- Now Available from THE JOHNS HOPKINS UNIVERSITY PRESS The Non-profit Scholarly Publishing Arm of The Johns Hopkins University Baltimore, MD, USA 1-800-537-5487; 410/516-6900 ---------------------------------------------------------------------- ADVANCES IN COMPUTER METHODS FOR SYSTEMATIC BIOLOGY Artificial Intelligence, Databases, Computer Vision based upon the 1990 NSF-ARTISYST conference Edited by Renaud Fortuner CONTENTS ARTIFICIAL INTELLIGENCE 1 Automated Reasoning for Biology and Medicine, Eric J. Horvitz SYSTEMATIC BIOLOGY AND PHYLOGENETIC INFERENCE 2 The Goals and Methods of Systematic Biology, Leslie F. Marcus 3 Phylogenetics, Richard E. Strauss 4 Randomness and Levels of Uncertainty in Phylogenetic Inference, James W. Archie 5 Limitations to Accurate Molecular Phylogenies, Michael D. Hendy and David Penny 6 The Reconstruction of Evolutionary Trees Using Minimal Description Length, Peter Cheeseman and Bob Kanefsky EXPERT SYSTEMS, EXPERT WORKSTATIONS, AND OTHER IDENTIFICATION TOOLS 7 Expert Workstations: A Tool-based Approach, Jim Diederich and Jack Milton 8 Principles and Problems of Identification, Richard J. Pankhurst 9 The NEMISYS Solution to Problems in Nematode Identification, Renaud Fortuner 10 NEMISYS: A Computer Perspective, Jim Diederich and Jack Milton 11 Object-centered Representation and Fish Identification in Antarctica, Nicole Gautier, Alain Pave, and Francois Rechenmann 12 Information Processing with Neural Networks, Robert Zerwekh 13 Judgment-Simulation Vector Spaces, H. Joel Jeffrey DATABASE SYSTEMS 14 Taxonomic Databases: The PANDORA System, Richard J. Pankhurst 15 Hierarchic Taxonomic Databases, James H. Beach, Sakti Pramanik, and John H. Beaman 16 New Database Technology for Nontraditional Applications, Marianne Winslett 17 Frame Representation and Relational Databases: Alternative Information-Management Technologies for Systematic Biology, Peter D. Karp 18 DELTA and INTKEY, Michael J. Dallwitz 19 Systematic Databases: The BAOBAB Design and the ALICE System, Richard J. White, Robert Allkin, and Peter J. Winfield 20 MICRO-IS: A Microbiological Database Management and Analysis System, David A. Portyrata 21 Applications of Artificial Intelligence to Extracting and Refining Locality Information, Matthew McGranaghan 22 The Use of Geographic Information Systems in Systematic Biology, Paulo A. Buckup COMPUTER VISION AND FEATURE EXTRACTION 23 Introduction to Digital Image Processing and Computer Vision, Ramin Samadani 24 Computer Vision Needs in Systematic Biology, F. James Rohlf 25 Feature Extraction in Systematic Biology, F. James Rohlf 26 MorphoSys: An Interactive Machine Vision Program for Acquisition of Morphometric Data, Christopher A. Meacham 27 Image Processing in Fungal Taxonomy and Identification, Glen Newton and Bryce Kendrick 28 Image Analysis in Systematic Biology: Models of Expected Structure, Stanley Dunn 29 The Automatic Design of Low-Level Image-processing Operators Using Classification and Regression Trees, Ramin Samadani CONCLUSIONS 30 Directions for Computing Research in Systematic Biology, Patrick A. D. Powell Workshop Notes Bayes' Rule, Belief Networks, and Discriminant Analysis The ASN.1 Data-Exchange Standard Computer Products Annotated Bibliography Report to the National Science Foundation Glossary References Index ISBN 0-8018-4492-4 Order Code PCI-3-KEA --------------------------------------------------------------------- A complete listing of Hopkins books and journals is available on the Internet via anonymous ftp or gopher at: jhunix.jhu.hcf.edu; select the University Press/JHU_Press directory. ---------------------------------------------------------------------