From owner-bio-matrix@net.bio.net Tue Aug 03 23:00:00 1993 Path: biosci!daresbury!zeta.bmc.uu.se!corax.udac.uu.se!sunic!uunet!haven.umd.edu!darwin.sura.net!news-feed-2.peachnet.edu!umn.edu!csus.edu!netcom.com!netcomsv!hotcity!nightowl From: nightowl@hotcity.COM (John Enterkin) Newsgroups: bionet.molbio.bio-matrix Subject: DROP Message-ID: Date: 4 Aug 93 13:09:20 GMT Organization: Hot City NetWorking Lines: 1 Add, Drop, or Reset a Conference. From owner-bio-matrix@net.bio.net Sat Aug 07 23:00:00 1993 Path: biosci!NET.BIO.NET!kristoff From: kristoff@NET.BIO.NET (David Kristofferson) Newsgroups: bionet.molbio.bio-matrix Subject: IMPORTANT BIOSCI INFORMATION Message-ID: <9308080900.AA13136@net.bio.net> Date: 8 Aug 93 09:00:02 GMT Sender: kristoff@net.bio.net Distribution: bionet Lines: 243 Three important items follow: BIOSCI archive searching by e-mail, the BIOSCI FAQ, and the BIOSCI User Address Directory form. If you have not yet listed yourself in our e-mail address directory, please take a few minutes to complete and return the form below. If your address information has changed since you listed yourself, please send us an updated form. Sincerely, Dave Kristofferson BIOSCI/bionet Manager kristoff@net.bio.net **** SEARCHING BIOSCI ARCHIVES WITH WAISMAIL **** E-mail users can search the BIOSCI archives by using our waismail e-mail server. For instructions send the message help to waismail@net.bio.net. Leave the Subject: line blank. Other methods of searching the archives via WAIS and gopher are described in the BIOSCI FAQ. **** BIOSCI FREQUENTLY ASKED QUESTIONS (FAQ) SHEET **** New users of BIOSCI/bionet may want to read the "Frequently Asked Questions" or "FAQ" sheet for BIOSCI. The FAQ provides details on how to participate in these forums and is available for anonymous FTP from net.bio.net [134.172.2.69] in pub/BIOSCI/biosci.FAQ. It may also be requested by sending e-mail to biosci@net.bio.net (use plain English for your request). The FAQ is also posted on the first of each month to the newsgroup BIONEWS/bionet.announce immediately following the posting of the BIOSCI information sheet. **** BIOSCI USER ADDRESS DIRECTORY **** Please take this opportunity to add your name and address information to the BIOSCI User Address Database if you have not already done so. Below is the address form that we would like each reader of the BIOSCI/bionet newsgroups to complete and return if you would like to be listed in our database. The database serves as a directory that enables biologists, who are currently using (or even just reading) the BIOSCI newsgroups, to look up e-mail addresses and other information about our users. The address database is reindexed nightly for WAIS and waismail access (waismail is our WAIS e-mail server, more below) and will also be available for access via other gopher sites if they wish to permit it. The raw unindexed data is available for FTP from net.bio.net and is atomized sufficiently to allow import into your local RDBMS should you so desire. Please carefully follow the instructions for completing the form below and return it to either of the following two addresses (whichever is more convenient for you). Thanks in advance for taking the time to complete and return the form. Addresses for returning forms Location Network ----------------------------- -------- ------- biovote@net.bio.net U.S.A. Internet/BITNET biovote@daresbury.ac.uk U.K. JANET MAKING SURE THAT YOUR INFORMATION IS CURRENT This notice will be mailed bimonthly to each newsgroup. You should check our WAIS source or waismail e-mail server from time-to-time to see if your address information is still up-to-date. Send the message help to waismail@net.bio.net for instructions on using waismail. Leave the Subject: line in your message blank. Using Gopher to complete the form --------------------------------- If you don't want to use a text editor, you can also use Dan Jacobson's gopher site to fill out the address database form as follows. Otherwise skip this section on gopher and proceed to the instructions for filling out the form below. > To add yourself to the database just point your > gopher client at merlot.welch.jhu.edu and select the following: > > --> 15. Searching For Biologists/ > > --> 9. E-mail Addresses of Biosci-Bionet Users/ > > --> 1. Add (or Correct) Your Address to the BIOSCI User Address > Data.. > > > And fill out the form. or Rob Harper's gopher site in Europe as follows: > Europeans can point their gopher client at gopher.csc.fi and add their > information to the database. All entries will be mailed directly to > Dave for incorporation in a wais source. > > The path to the questionare is as follows. > > ---> 10. Finnish EMBnet BioBox/ > > ---> 8. FAQ Files/ > > FAQ Files > > 1. EMBnet: Information. > 2. EMBnet: Internet resources guide. > 3. A Biologist's Guide to Internet Resources/ > 4. All FAQs (Frequently Asked Questions) Searches and Archives/ > --->5. Bionauts Address Database (questionaire) IMPORTANT INSTRUCTIONS - PLEASE READ CAREFULLY Please enter all responses after the : on each line, leaving one (1) blank space after the : (i.e., before the start of your text). Please do NOT extend your responses past the end of each line (80 characters) or alter any of the field identifiers such as "first name: ". Several lines are provided at the end of the form for comments, but, please adhere to the line length restriction. On the date: line, please enter the date in the DD-MM-YY format, e.g., 05-05-93 for 5 May 1993. This line will tell others when the information was last updated. Please be sure to include the 0's for single digit days or months, e.g., 05-05-93, not 5-5-93. Note that the "e-mail network: " line below is for specifying, e.g., "Internet," "BITNET," "EARN," "JANET," or whatever other network that your computer may be on. If you are uncertain about any field, please feel free to leave it blank, but please DO NOT DELETE the field identifier from the form! In the first field below, "New information or Update ...", please enter "N" if this is the first time that you have registered in the directory or "U" if you are correcting a listing that you sent to us previously. The comment: lines may be used for anything that you like but PLEASE DO NOT DELETE THEM FROM THE FORM OR ALTER THEM. One suggested use is to list the names of the newsgroups in which you participate. Please use the MAILING LIST name (see below - the latest version of the list can be requested from biosci@net.bio.net) instead of the USENET name even if you don't participate by e-mail. WAIS might get confused by the periods in the USENET names. This allows one to retrieve via WAIS or waismail the list of participants in a particular group. For example: comment: ARABIDOPSIS PLANT-BIOLOGY BIONEWS On the comment: lines use these names below ---- NOT the USENET names below MAILING LIST NAME USENET Newsgroup Name ----------------- --------------------- ACEDB-SOFT bionet.software.acedb AGEING bionet.molbio.ageing AGROFORESTRY bionet.agroforestry ARABIDOPSIS bionet.genome.arabidopsis BIOFORUM bionet.general BIO-INFORMATION-THEORY bionet.info-theory BIONAUTS bionet.users.addresses BIONEWS bionet.announce BIO-JOURNALS bionet.journals.contents BIO-MATRIX bionet.molbio.bio-matrix BIO-SOFTWARE bionet.software CHROMOSOMES bionet.genome.chromosomes COMPUTATIONAL-BIOLOGY bionet.biology.computational DROSOPHILA bionet.drosophila EMBL-DATABANK bionet.molbio.embldatabank EMPLOYMENT bionet.jobs GDB bionet.molbio.gdb GENBANK-BB bionet.molbio.genbank GENETIC-LINKAGE bionet.molbio.gene-linkage HIV-MOLECULAR-BIOLOGY bionet.molbio.hiv HUMAN-GENOME-PROGRAM bionet.molbio.genome-program IMMUNOLOGY bionet.immunology INFO-GCG bionet.software.gcg JOURNAL-NOTES bionet.journals.note METHODS-AND-REAGENTS bionet.molbio.methds-reagnts MOLECULAR-EVOLUTION bionet.molbio.evolution NEUROSCIENCE bionet.neuroscience N2-FIXATION bionet.biology.n2-fixation PHOTOSYNTHESIS bionet.photosynthesis PLANT-BIOLOGY bionet.plants POPULATION-BIOLOGY bionet.population-bio PROTEIN-ANALYSIS bionet.molbio.proteins PROTEIN-CRYSTALLOGRAPHY bionet.xtallography RAPD bionet.molbio.rapd SCIENCE-RESOURCES bionet.sci-resources TROPICAL-BIOLOGY bionet.biology.tropical VIROLOGY bionet.virology WOMEN-IN-BIOLOGY bionet.women-in-bio YEAST bionet.molbio.yeast Listing newsgroups on the comment: line is optional, of course. Thanks again for your cooperation! --------------- please cut here and return portion below --------------- New information or Update to old record (enter N or U): date (DD-MM-YY): first name: middle initial: family name: job title: e-mail address: e-mail network: phone number: FAX number: institution: address1: address2: address3: city: state/province: country: postal code: research interest: research interest: comment: comment: comment: comment: comment: From owner-bio-matrix@net.bio.net Wed Aug 18 23:00:00 1993 Path: biosci!agate!howland.reston.ans.net!usc!cs.utexas.edu!convex!news.ssc.gov!fnnews.fnal.gov!lakesis.fapesp.br!ime.usp.br!ime.usp.br!ueda From: ueda@ime.usp.br (Ricardo Ueda Karpischek) Newsgroups: bionet.molbio.bio-matrix Subject: test - don't read Message-ID: Date: 17 Aug 93 22:01:23 GMT Organization: Math. Institute, Univ. of Sao Paulo, Brazil Lines: 2 NNTP-Posting-Host: confa.ime.usp.br Full-Name: Ricardo Ueda Karpischek -- test -- From owner-bio-matrix@net.bio.net Thu Aug 26 23:00:00 1993 Path: biosci!daresbury!daresbury!news From: PARSONS_A@uk.co.pcr.snd01 Newsgroups: bionet.molbio.bio-matrix Subject: Software for Clustering Databases by Sequence Similarity Message-ID: <1993Aug27.142608.4065@gserv1.dl.ac.uk> Date: 27 Aug 93 15:22:14 GMT Sender: list-admin@daresbury.ac.uk Distribution: bionet Lines: 23 Precedence: first-class Original-To: BIOMATRX Greetings NetFolk, Just a quickie. Does anyone know if there is any software available for clustering databases by sequence similarity (in the way the Entrez sequences are clustered). I dont mean in the way that GenBank is clustered by taxonomy but by actual sequence similarity. ADVthanksANCE, Tony Parsons +----------------------------------------------------------------------------+ | Dr.Tony Parsons, VOX : + 44 304 616871 | | Information Technology, FAX : + 44 304 616670 | | Pfizer Central Research, | | Ramsgate Road, +---------------------- e-mail ------------------------+ | Sandwich, |JANET : parsons_a@uk.co.pcr.snd01 | | KENT |Internet : parsons_a@snd01.pcr.co.uk | | CT13 9NJ UK |Compuserve : 100064,765 PSImail:234216700127.parsons_a | +-----------------+----------------------------------------------------------+ From owner-bio-matrix@net.bio.net Tue Aug 31 23:00:00 1993 Path: biosci!AI.SRI.COM!pkarp From: pkarp@AI.SRI.COM (Peter Karp) Newsgroups: bionet.molbio.bio-matrix Subject: electronic journals Message-ID: Date: 1 Sep 93 19:33:54 GMT Sender: daemon@net.bio.net Distribution: bionet Lines: 8 Anyone interested in electronic journals will probably want to study the example of JAIR, Journal of Artificial Intelligence Research, which has recently been established. For information on how the journal functions, see the newsgroup comp.ai.jair.announce or send electronic mail to jair@cs.cmu.edu with the subject ``autorespond'' and the message body ``help''. Peter