From owner-chromosomes@net.bio.net Thu Feb 01 22:00:00 1996
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From: opv.lsp@ix.netcom.com(OPV Lifescience Partners )
Newsgroups: bionet.genome.chromosomes
Subject: BRCA1 Genetic Lab Looking for  Operations Director
Date: 2 Feb 1996 19:22:14 GMT
Organization: Netcom
Lines: 126
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X-NETCOM-Date: Fri Feb 02 11:22:14 AM PST 1996

OPV Lifescience Partners
email opv.lsp@ix.netcom.com
fax 415 674-1965

OPV Lifescience Partners has been retained to identify and place a
Director of Operations for a cutting edge genetic reference lab.  

Please read the position description and determine whether you are an
appropriate candidate.
If you are please email ( no attachments) a resume and cover letter to
opv.lsp@ix.netcom.com or fax us at 415 674 1965.

All resumes will be reviewed, please do not attempt to contact our
client directly as we are the retained agent for this position search
and your direct contact will not improve chances of placement.

We appreciate your time and immediate application for this position.


_______________________________________________________________________
______
Position Description
Director of Operations


REPORTS TO:         President, Myriad Genetic Laboratories, Inc.

RESPONSIBILITIES:  

The Director of Operations will have responsibility for managing
day-to-day operations of what will become a very high volume,
state-of-the-art genetic testing laboratory. This person will be
responsible for the developme
nt, planning, carrying out and control of testing methods, processes
and operations.  The Director of Operations will be responsible for
hiring, managing and motivating a supervisory team through a major
scale up in capac
ity and service volume.

Experience planning, implementing and maintaining of clinical
laboratory procedures, processes and operations at the highest
professional standards; 

Outstanding people skills for hiring, directing and motivating key
personnel.

History of hands on management and getting things done.

Experience with laboratory processes based on DNA testing.

Specifically, this individual will be responsible for planning,
organizing and managing the scale up and operation of a rapidly growing
commercial clinical laboratory.  The Director of Operations will be
responsible for:

Producing accurate test results in a turnaround time sensitive service
business.

Developing processes and technologies to improve service, reduce costs
and assure continued compliance with CLIA and other regulatory.

Assuring timely and effective responses to customer inquiries and
complaints. 

Planning and coordinating the scale up of manpower, equipment,
facilities, materials and controls to deliver superior service as
volume expands.

EDUCATION:

Undergraduate degree in life science
An advanced degree in molecular biology, genetics.

CANDIDATE QUALIFICATIONS:

    A minimum of five years management and supervisory experience in a
clinical reference laboratory.

    Excellent management and communication skills, both verbal and
written.

    The ability to deal effectively with all levels of employees.

    A keen sense of differences in disciplines and the ability to
affect team performance.

    A solid understanding of service goals, including accuracy,
turnaround time and customer satisfaction.


PROFILE:

Highly energetic, results oriented and dedicated to achieving
established and personally defined goals.

Excellent interpersonal, motivational and communication skills.

Strong leadership skills; exhibit a strong presence and ability to
develop and command the respect of others.

A depth of management experience and ability to take charge of the
major undertaking involved in this position.

Technical capabilities to understand and incorporate the technologies
used in Myriad Labs' testing into the factors for success and economy. 
(Board certification for DNA testing a plus.)

Sensitivity to the social and ethical issues that surround the right of
privacy and the potential discriminatory ways disease predisposition
testing might be used if inadequate controls existed.

An ability to communicate well with both superiors and subordinates in
developing and completing multiple projects in a result driven
environment.

LOCATION:            Salt Lake City, Utah

COMPENSATION 
A compensation package to include a base salary between ($70,000 to
$80,000) and relocation assistance based on the candidate's situation.

OPPORTUNITY:    
To build a premier genetic testing service laboratory.  Myriad Labs
offers an opportunity to make a significant change in testing that will
result in a meaningful improvement in the quality of early detection
and treatment for major diseases.

From owner-chromosomes@net.bio.net Thu Feb 01 22:00:00 1996
Path: biosci!agate!howland.reston.ans.net!ix.netcom.com!netnews
From: opv.lsp@ix.netcom.com(OPV Lifescience Partners )
Newsgroups: bionet.genome.chromosomes
Subject: Medical Director for BRCA1 BRCA2 Reference Lab Sought
Date: 2 Feb 1996 19:45:07 GMT
Organization: Netcom
Lines: 142
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X-NETCOM-Date: Fri Feb 02 11:45:07 AM PST 1996

*************OPV LIFESCIENCE PARTNERS************************
email opv.lsp@ix.netcom.com
fax 415 674-1965
*****************************************************************

OPV Lifescience Partners has been retained to identify and place the
Medical Director of a reference lab that is working on the cutting edge
of predisposition genetics. 

Please read the position description below and determine whether you
are or 
you know a qualified candidate for this position. 

We will be conducting this search over the next six weeks so your
prompt response is required.
All C.V. will be reviewed and appropriate candidates will be contacted.

Please email a cover letter and resume to opv.lsp@ix.netcom.com( no
attachments will be read) or fax us your resume at 415 674-1965.

We appreciate your time and cooperation.

*****Note: Do not contact our client directly as we are the exclusive
retained firm conducting this position search, any direct contact will
not have beneficial results*******


_________________________________________________________
POSITION DESCRIPTION
Medical Director


REPORTS TO:                     President,  Myriad Genetic Laboratories

RESPONSIBILITIES:         
The Medical Director will have responsibility for oversight of Myriad's
CLIA-licensed laboratory and its education department. Specifically the
Medical Director will be responsible for the results of Myriad's
genetic tests; explaining the benefits, educating physicians about the
data and providing insurers and government with information for
reimbursement considerations.

 	Responding, monitoring, and providing education to clients so as
to expand and support reference lab services.

 	Assuring that the company complies with all Federal, State and
Local regulations so as not to impede or delay service offerings. This
would include the Medical Director's name on the CLIA license. 

 	Working with Government, HMO and Insurance providers to obtain
reimbursement by showing the cost benefit of testing high risk
individuals.

 	Working with opinion leaders on ethical and  social issues
	regarding 
	genetic testing.


EDUCATION:
Undergraduate degree in life science
An advanced degree: MD with pathology/oncology, 
knowledge of molecular genetics and clinical experience.




PERFORMANCE PARAMETERS:

 	Capable of working effectively with his/her peers and
subordinates, the research and medical community, customers and
suppliers, and regulatory agencies to achieve corporate goals.

 	Ability to explain and develop programs to justify use and
reimbursability of genetic testing services


CANDIDATE QUALIFICATIONS: 
The Medical Director will be working on the cutting edge of genetic
testing. The candidate must be able to show purpose and value to the
new technology while being able to help craft and formulate guidelines
for the technology. The candidate must have the depth and experience to
work with a variety of third parties who will reimburse the testing
services. This is a quickly growing organization that will demand the
ability to grow and develop technology that represents a new paradigm
in disease detection.

Experience working with national accounts including managed care (e.g.,
HMOs and PPOs), cancer centers, and physician professional
corporations, who would obtain services from reference labs, especially
esoteric labs. Government and third party payor reimbursement
experience.

	Ten years of professional business experience in the diagnostics
or reference laboratory industry or pharmaceutical industry with at
least two years of  experience with education and reimbursement issues.

A technical understanding of genomics and diseases where predisposition
factors play a key role.

Sensitivity to the social and ethical issues which surround disease 
predisposition testing.

Experience with CLIA Regulations and quality assurance/quality control
programs.


MEDICAL DIRECTOR PROFILE:

Highly energetic, results oriented and dedicated to achieving
established and personally defined goals.

Excellent interpersonal, motivational and communication skills.

Strong leadership skills; exhibit a strong presence and ability to
develop and command the respect of others.

Maturity to lead and resolve issues in a pressure driven environment.

Technical capabilities to understand and incorporate the technologies
used in Myriad Labs testing into the factors for success, entry
barriers, reimbursement factors, and distribution dynamics.

Sensitivity to the social and ethical issues involved in               
disease predisposition testing. 

 			Government and third party payor reimbursement
experience.


LOCATION:            Salt Lake City, Utah

COMPENSATION: A compensation package to include a base salary in the
low  to mid one hundreds and relocation assistance based on the
candidate's situation.

OPPORTUNITY:    To build a leading company in the emerging field of
genetic testing that will work with cutting edge technology.  Myriad
Genetic Laboratories will make a significant change in predisposition
testing that will improve the quality of early diagnosis and treatment
for major diseases.  Improving the lives of countless numbers of people
will result in a sense of personal achievement.
	

From owner-chromosomes@net.bio.net Fri Feb 02 22:00:00 1996
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From: Graham Dellaire <popa0206@PO-Box.McGill.CA>
Newsgroups: bionet.genome.chromosomes
Subject: Mouse Chromosome Paints??? DO they exits?
Date: 3 Feb 1996 04:21:23 GMT
Organization: McGill University
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Doses anyone out there have chromosome specific coatasomes (chromosome paints) for the mouse
Or know of a reference for them....


I have been trying to find some in the literature and I am having a hard time.


Thanks in advance

Graham Dellaire

dellaire@odyssee.net

From owner-chromosomes@net.bio.net Sun Feb 04 22:00:00 1996
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From: "Mr. Jyh-Shyang Kao" <kao@gl.umbc.edu>
Newsgroups: bionet.genome.chromosomes
Subject: E. coli linkage map
Date: Mon, 5 Feb 1996 15:20:28 -0500
Organization: University of Maryland, Baltimore County
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Could anyone out there tell me where I can find the latest version of E. 
coli K-12 chromosome linkage map? I have the edition 7 (Bachmann, 1987). 
I am wondering is there a newer version. Thanks in advance. 

Jay K.

From owner-chromosomes@net.bio.net Sun Feb 04 22:00:00 1996
Path: biosci!daresbury!lyra.csx.cam.ac.uk!news
From: Ricky Critcher <rc@mole.bio.cam.ac.uk>
Newsgroups: bionet.genome.chromosomes
Subject: Mouse chromosome paints
Date: Mon, 05 Feb 1996 08:13:58 +0000
Organization: University of Cambridge, England
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Cambio (UK)  sell mouse paints which are labelled with Cy 3, biotin, 
or FITC. Alternativly you could make your own if you can get hold of 
some monochromosomal mouse hybrids and pcr the mouse chromosome.

From owner-chromosomes@net.bio.net Sun Feb 04 22:00:00 1996
Path: biosci!daresbury!lyra.csx.cam.ac.uk!news
From: Ricky Critcher <rc@mole.bio.cam.ac.uk>
Newsgroups: bionet.genome.chromosomes
Subject: Re: Mouse Chromosome Paints??? DO they exits?
Date: Mon, 05 Feb 1996 08:12:14 +0000
Organization: University of Cambridge, England
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Cambio (UK) sell mouse specific chromosome paints labelled with Cy3, 
Biotin, or FITC. Alternativley if you have access to mouse 
monochromosomal hybrids you can make your own by using pcr to amplify 
the mouse chromosome.

Ricky Critcher
Dept.of Genetics
Cambridge 
England

From owner-chromosomes@net.bio.net Sun Feb 04 22:00:00 1996
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From: hk-miami@ix.netcom.com(HK )
Newsgroups: bionet.genome.chromosomes
Subject: Re: Mouse Chromosome Paints??? DO they exits?
Date: 5 Feb 1996 01:44:37 GMT
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In <4euns3$7bl@sifon.cc.mcgill.ca> Graham Dellaire
<popa0206@PO-Box.McGill.CA> writes: 
>
>Doses anyone out there have chromosome specific coatasomes (chromosome
paints) for the mouse
>Or know of a reference for them....
>
>>I have been trying to find some in the literature and I am having a
hard time.
>
>Thanks in advance
>Graham Dellaire
>>dellaire@odyssee.net
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Could you make your own?  Make chromosomes from mice, and microdissect
the one of interest (or have someone do it).  Then, make a probe using
PCR and biotin-dUTP.

See Genomics 6:243-251. 1990.  
If it can be done with human chromosomes (whole chromosomes or
chromosome regions), it can certainly be done with mouse chromosomes.

Helene
University of Miami

From owner-chromosomes@net.bio.net Mon Feb 05 22:00:00 1996
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From: coco@nki.nl (coco)
Newsgroups: bionet.genome.chromosomes
Subject: Re: Mouse Chromosome Paints??? DO they exits?
Date: 6 Feb 1996 17:03:24 GMT
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In article <4euns3$7bl@sifon.cc.mcgill.ca>, popa0206@PO-Box.McGill.CA says...
>
>Doses anyone out there have chromosome specific coatasomes (chromosome 
paints) for the mouse
>Or know of a reference for them....
>
>
>I have been trying to find some in the literature and I am having a hard 
time.
>
>
>Thanks in advance
>
>Graham Dellaire
>
>dellaire@odyssee.net


Yes the do exist. Here is the reference:

Nat Genet 9: 369-375 (1995)[95315987] 

Chromosome specific paints from a high resolution flow karyotype of the
mouse.

P. Rabbitts, H. Impey, A. Heppell-Parton, C. Langford, C. Tease, N. Lowe, D. 
Bailey, M. Ferguson-Smith & N. Carter

MRC Radiotherapeutics Unit, MRC Centre, Cambridge, UK. 

Chromosomes from antigen stimulated B-cells from spleens of inbred mice have 
been separated using flow cytometry into 18
distinguishable peaks. Using locus-specific oligonucleotides and fluorescence 
in situ hybridization to banded metaphase
spreads, 15 individual chromosomes were identified: 1, 2, 3, 6, 7, 8, 9, 11, 
12, 16, 17, 18, 19, X and Y. The remaining six
chromosomes, occurring as pairs in three peaks, 4 with 5, 10 with 13, and 14 
with 15, were resolved by flow sorting
chromosomes from mice carrying an appropriate homozygous translocation and 4, 
5 and 14 have been isolated in this way.
This is the first demonstration of how a complete set of mouse chromosome 
paints can be produced. 


Jose 

 


From owner-chromosomes@net.bio.net Tue Feb 06 22:00:00 1996
Path: biosci!GALAXY.GOV.BC.CA!PMACLEOD
From: PMACLEOD@GALAXY.GOV.BC.CA ("Dr. Patrick Macleod 727-4461")
Newsgroups: bionet.genome.chromosomes
Subject: Realtime Video/multimedia representations of meiosis/mitosis
Date: 7 Feb 1996 10:08:54 -0800
Organization: BIOSCI International Newsgroups for Molecular Biology
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    I am looking for s source of a brief segment that I can use in 
    expalining meiosis and mitosis to couple in a genetic counselling
    clinic.  I have lots of ideograms, FISH cartoons but I would like 
    something that captures the dynamic aspects of cell divisions.
    
    Can anyone help diredt me to a source?
    


From owner-chromosomes@net.bio.net Wed Feb 07 22:00:00 1996
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From: mazzocco@sirio.cba.unige.it
Newsgroups: bionet.genome.chromosomes
Subject: silent mutation
Date: Thu, 08 Feb 96 12:53:35 PDT
Organization: Univ. of Genoa, Italy
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I'm looking for someone who is able to solve this problem:
what's the importance of silent mutation among human pathology?

Thank you very much,

  Katia Mazzocco


From owner-chromosomes@net.bio.net Thu Feb 08 22:00:00 1996
Path: biosci!ihnp4.ucsd.edu!munnari.OZ.AU!news.mel.connect.com.au!harbinger.cc.monash.edu.au!bunyip.cc.uq.oz.au!news
From: andrea crampton <s306133@student.uq.edu.au>
Newsgroups: bionet.genome.chromosomes
Subject: microdissection of chromosomes
Date: 9 Feb 1996 02:06:46 GMT
Organization: university of queensland
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This is a multi-part message in MIME format.

---------------------------------263842142915020
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Hi!
	has anyone tried to use microdissection to isolate a whole chromosome 
and then use it as a base for a chromosome specfic library?????  HOW 
SUCCESSFUL AND HOW EASY IS MICRODISSECTION WHEN USED FOR SUCH AN 
APPLICATION................i don't want to dive in and break my neck so 
to speak.........




---------------------------------263842142915020
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>!>!>!>!>!>!>!>!>!>!>!>!>>!>!>!>!>!>!>!>>!>!>!>!>!>!>!>>!>!>!>!>!>!
#:#:#:#:#:#:#:#:#:#:#:#:#:#:#:#:#:#:#:#:#:#:#:#:#:#:#:#:#:#:#:#:#
<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<!<
ANDREA
DEPARTMENT OF PARASITOLOGY, 
UNIVERSITY OF QUEENSLAND,
AUSTRALIA
ph. 07 3365 6975
fax. + 61 7 3365 1588
Department of parasitology home page: http://www.uq.edu.au/parasitology/www.html
---------------------------------263842142915020--

From owner-chromosomes@net.bio.net Thu Feb 08 22:00:00 1996
Path: biosci!bloom-beacon.mit.edu!newsfeed.internetmci.com!news.internetMCI.com!darwin.sura.net!maze.dpo.uab.edu!usenet
From: Edward Walthall <walthall@phybio.bhs.uab.edu>
Newsgroups: bionet.genome.chromosomes
Subject: Size of Mouse Genes
Date: Fri, 09 Feb 1996 14:23:06 -0600
Organization: Dept. of Physiology-UAB
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I would like to know the size of the entire murine gene of the 
following: CD3 eta/phi, L14 S-type lectin, TCR delta, TdT, Tenascin, and 
vav.  Where can I find this information?

From owner-chromosomes@net.bio.net Sun Feb 11 22:00:00 1996
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From: Teresa Binstock <binstoct@essex.UCHSC.edu>
Newsgroups: bionet.molbio.bio-matrix,bionet.molbio,bionet.genome.chromosomes,bionet.general,bionet.cellbiol
Subject: RIBOSOME INQUIRY re: S4x and S4y
Date: Mon, 12 Feb 1996 03:36:49 -0700
Organization: University of Colorado, Health Sciences Center
Lines: 27
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Xref: biosci bionet.molbio.bio-matrix:706 bionet.genome.chromosomes:1037 bionet.general:19865 bionet.cellbiol:4020

In humans, the X and Y chromsomomes have genes for S4 ribosomal subunits. 
These genes are homologous but not identical. The most complete symbol 
for each gene is rpS4x and rpS4y. This means that human males translate 
mRNA via {one of S4x and one of S4y} whereas human females translate mRNA 
via {two of S4x}. 
      This sexual dimorphism of S4x and S4y exists independently of gonadal 
and adrenal hormones. Yet, given all the mRNA processed by humans in 
their lifetimes and, relatedly, the nearly infinite number of ribosomes 
used in those translations, the probability seems high that at least a 
few specific mRNA have sexually dimorphic translation in humans. In other 
words, at least some genes would lead to differing proteins due to being 
processed by S4x or by S4y. Should this be the case, then at least some 
biological sex differences would be independent of gonadal hormones, a 
finding that would help lay to rest the seemingly outmoded notion of the 
"bipotential embryo". 
      I would like to receive suggestions regarding how to experimentally 
determine translation differences between S4x and S4y, and would 
appreciate sincere replies being sent me directly, and posted to 
newsgroup only if you so wish. Thank you.


Teresa C. Binstock, Researcher
Developmental & Behavioral Neuroanatomy
Denver CO USA
			Teresa.Binstock@uchsc.edu

      

From owner-chromosomes@net.bio.net Tue Feb 13 22:00:00 1996
Path: biosci!PITT.EDU!johnnyv+
From: johnnyv+@PITT.EDU (John Q. Genetics)
Newsgroups: bionet.genome.chromosomes
Subject: Used"Dupont Genesis" Automated DNA Seqencers FOR SALE.
Date: 14 Feb 1996 11:53:02 -0800
Organization: MGB
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 We have 2 - Genesis Sequencers that are in good condition. Please contact 
John Cardamone at 412-383-9769 at the University of Pittsburgh, Department
of Molecular Genetics & Biochemistry, Research Support Facilities.
We uill take the best offer.
Thank You!
John Cardamone
jcard+@pitt.edu

Also, please visit our web site, http://www.pitt.edu/~rsup


From owner-chromosomes@net.bio.net Wed Feb 14 22:00:00 1996
Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!in2.uu.net!news.u.washington.edu!roach
From: roach@u.washington.edu (Jared Roach)
Newsgroups: bionet.genome.chromosomes
Subject: Re: Genome Factoids Wanted
Date: 15 Feb 1996 00:29:09 GMT
Organization: University of Washington, Seattle
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Here is a relevant report I wrote for internal circulation a
few months ago.  Note that a few large chunks of sequeunce 
have been deposited into Genbank since then.


September 30, 1995
	Here's a run-down on the progress of sequencing the human 
genome to date (Genbank Release 90.0), considering only DNA (i.e. no 
mRNA, RNA or ss-DNA):

Number of Contigs Greater Than		Total Length in these Contigs
40 kb		27					 2.60 Mb
30 kb		59					 3.74 Mb
20 kb		86					 4.40 Mb
10 kb		240					 6.50 Mb
 5 kb		631					 9.15 Mb
 1 kb		4115					16.59 Mb

Note on table interpretation: There are 59 contigs greater than 30kb, 
not 27+59.


Considering contigs greater than 10 kb as being useful for building 
the Human Genome sequence, that makes roughly (6.50 Mb)/(3 Gb)=0.22% of 
the genome sequenced to date.


Here are the loci greater than 40kb:
HUMTCRB	684973	TCRb	7
HUMRETBLAS	180388	Retinoblastoma	13
HUMFMR1S	152351		
HSU07000	152141		
HUMIDUR	130000		
HUMNEUROF	100849	Neurofibromatosis	17
HUMTCRADCV	97634	TCRa	14
HSABLGR3	84539		
HSTCRBV (redundant with HUMTCRB)	77743		
HUMHBB	73308	Beta Globin	11
HUMFGLBTK	69363		
HUMMMDBC	68468		
HUMGHCSA	66495	Growth Hormone and Chorionic Somatomammotropin	17
HSMHCAPG	66109	Major Histocompatibility Complex	6
HSABLGR2	59012		
HUMHDABCD	58864		
HUMHPRTB	56737	Hypoxanthine Phosphoribosyl Transferase	X
HUMVITDBP	55136	Vitamin D Binding Protein Gene	
HUMPKD1GEN	53522		
HSG6PDGEN	52173		
HSU24498	47934		
HSU34879	46610		
HSU15177	43599		
HSU13369	42999		
HSU15422	40573		
HUMHDAC	40289		
HSL261H12	40198		
HUMHDAD	40103		

Jared Roach
roach@u.washington.edu
http://weber.u.washington.edu/~roach/

From owner-chromosomes@net.bio.net Wed Feb 14 22:00:00 1996
Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!swrinde!tank.news.pipex.net!pipex!peer-news.britain.eu.net!warwick!news.wlv.ac.uk!usenet
From: Alastair H J Kerr <a9481359@wlv.ac.uk>
Newsgroups: bionet.genome.chromosomes
Subject: studying biotech, SANDWICH job wanted
Date: 15 Feb 1996 15:35:09 GMT
Organization: University of Wolverhampton, U.K.
Lines: 38
Message-ID: <4fvjrd$frp@ccuh.wlv.ac.uk>
NNTP-Posting-Host: ma225-bw.wlv.ac.uk
Mime-Version: 1.0
Content-Type: multipart/mixed;
	boundary="-------------------------------293583154230632"
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This is a multi-part message in MIME format.

---------------------------------293583154230632
Content-Transfer-Encoding: 7bit
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  Looking for Sandwich placement from Sept '96. Will fit any role.
  (see bionet.jobs.wanted for more info)

  BSc (hons) student Wolverhampton, willing to travel.

                                                   Thanks.
                                                    a9481359@wlv.ac.uk
                                                    Alastair

---------------------------------293583154230632
Content-Transfer-Encoding: 7bit
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----------------------------------------------------------------------------

Newsgroup: bionet.genome.chromosomes

   * microdissection of chromosomes - andrea crampton (31)
   * silent mutation - mazzocco@sirio.cba.unige.it (8)
   * Size of Mouse Genes - Edward Walthall (3)
   * Used"Dupont Genesis" Automated DNA Seqencers FOR SALE. - John Q.
     Genetics (10)
   * Re: Genome Factoids Wanted - Jared Roach (60)
   * Telomeres and chromosome lo - "David Matthes" (29)
   * RIBOSOME INQUIRY re: S4x and S4y - Teresa Binstock (27)

----------------------------------------------------------------------------


---------------------------------293583154230632--

From owner-chromosomes@net.bio.net Wed Feb 14 22:00:00 1996
Path: biosci!BIOMAIL.SJSU.EDU!matthes
From: matthes@BIOMAIL.SJSU.EDU ("David Matthes")
Newsgroups: bionet.genome.chromosomes
Subject: Telomeres and chromosome lo
Date: 14 Feb 1996 17:10:08 -0800
Organization: BIOSCI International Newsgroups for Molecular Biology
Lines: 29
Sender: daemon@net.bio.net
Distribution: world
Message-ID: <9602150001.AA07435@chemsuna.sjsu.edu>
NNTP-Posting-Host: net.bio.net

Telomeres and chromosome loss in hybridomas
In my reading about the formation of hybrids between human fibroblasts or 
lymphocytes and mouse tumor cell lines, I encounter little in the way of 
explanation for the unequal chromosome loss in the hybrid cells.  I 
recognize that it is advantageous for mapping genes to human chromosomes 
that most (but not all) of the human chromosomes are lost, but my 
question is why are the human chromosomes lost and not those of the mouse?

I only know of the following two speculations:

1) Mouse chromosomes may replicate more quickly than human chromosomes.  
Failure to replicate as quickly results in loss.  

2) The chromosome loss happens in a similar way as occurs in haploidization 
in Aspergillis.  I'm not sure why or how this would account for the species 
bias of chromosome loss, but it was mentioned by one author.

Does anyone know of work examining how differences in telomeres and 
telomerase in the two parent cell lines might contribute to the differential 
chromosome loss?   

Have reciprocal fusions been made in which human tumor lines have been fused 
with mouse fibroblasts or lymphocytes?  Are mouse chromosomes lost in such 
hybrids? 

Thank you.




From owner-chromosomes@net.bio.net Wed Feb 14 22:00:00 1996
Path: biosci!biosci!not-for-mail
From: dbecker@ix.netcom.com (Daniel M. Becker)
Newsgroups: bionet.biology.cardiovascular,bionet.cellbiol,bionet.diagnostics,bionet.general,bionet.genome.chromosomes,bionet.immunology,bionet.metabolic-reg,bionet.microbiology,bionet.molbio.gdb,bionet.molbio.gene-linkage,bionet.molbio.hiv,bionet.molbio.methds-reagents,bionet.molbio.yeast,bionet.virology,bit.listserve.medforum
Subject: W. French Anderson seminar, June 1988: did you attend? (legal dispute involving patent rights)
Date: 15 Feb 1996 15:58:20 -0800
Organization: Netcom
Lines: 23
Sender: biohelp@net.bio.net
Distribution: world
Message-ID: <3122b3d7.712618@nntp.ix.netcom.com>
NNTP-Posting-Host: net.bio.net
Xref: biosci bionet.biology.cardiovascular:787 bionet.cellbiol:4082 bionet.diagnostics:638 bionet.general:19938 bionet.genome.chromosomes:1043 bionet.immunology:7727 bionet.metabolic-reg:674 bionet.microbiology:4967 bionet.molbio.gdb:427 bionet.molbio.gene-linkage:978 bionet.molbio.hiv:1919 bionet.molbio.yeast:4740 bionet.virology:6227

In connection with a pending legal dispute involving patent rights to
human gene therapy, 

     I would like to identify all attendees of a June 1988 seminar
given by Dr. W. French Anderson at N.I.H. at which he described the
N2-TIL gene therapy protocol (nominally dated June 10, 1988) of which
he, R. Michael Blaese, and Steven A. Rosenberg were principal
investigators.  The Washington Post reported on Wednesday, June 15,
1988 that "[i]n a description of the experiment filed with government
officials this week, a research team including Dr. Steven A. Rosenberg
of the NCI and Dr. W. French Anderson. . . proposed inserting a
'marker' gene into a newly identified type of cancer-fighting cell and
then placing the altered cells into patients. . . . Anderson first
described the experiment at a seminar last week at NIH."

    If you attended this seminar or know someone who did, please
contact me via e-mail or snail mail:

Daniel M. Becker, M.D., J.D.
Pennie & Edmonds
2730 Sand Hill Rd, Suite 300
Menlo Park, CA  94022
dbecker@pennie.com

From owner-chromosomes@net.bio.net Fri Feb 16 22:00:00 1996
Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!in1.uu.net!news.u.washington.edu!roach
From: roach@u.washington.edu (Jared Roach)
Newsgroups: bionet.genome.chromosomes
Subject: How much of the human genome has been sequenced. (Web Page)
Date: 17 Feb 1996 02:34:51 GMT
Organization: University of Washington, Seattle
Lines: 8
Message-ID: <4g3esb$goo@nntp3.u.washington.edu>
NNTP-Posting-Host: saul2.u.washington.edu
NNTP-Posting-User: roach

I have incorporated my report on how much of the human genome 
has been sequencedinto a web page at

http://weber.u.washington.edu/~roach/human_genome_progress2.html

This report is now updated through Genbank Release 92.0 (Dec 15, 1995).



From owner-chromosomes@net.bio.net Sat Feb 17 22:00:00 1996
Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!uwm.edu!omnifest.uwm.edu!omnifest.uwm.edu!not-for-mail
From: rbuyan@omnifest.uwm.edu (Ronald A. Buyan)
Newsgroups: bionet.genome.chromosomes
Subject: Re: Telomeres and chromosome lo
Date: 18 Feb 1996 17:11:08 -0600
Organization: Omnifest
Lines: 2
Distribution: na
Message-ID: <4g8bmc$fs1@omnifest.uwm.edu>
NNTP-Posting-Host: 129.89.70.58

There is an Article in the Feb 1996 issue of Scientific American on the
subject with some references that may be of some help.

From owner-chromosomes@net.bio.net Mon Feb 19 22:00:00 1996
Path: biosci!agate!hpg30a.csc.cuhk.hk!news.cuhk.edu.hk!newsfeeder.ust.hk!nntp.hk.super.net!news.iij.ad.jp!wnoc-tyo-news!tokyonet.ad.jp!wincgw1!creamy!icspub!odins-suita!aist-nara!t-itou
From: t-itou@bs.aist-nara.ac.jp (Takesi Itou)
Newsgroups: bionet.genome.chromosomes
Subject: Re: E. coli linkage map
Message-ID: <4g9ev5$744@fse3.aist-nara.ac.jp>
Date: 19 Feb 96 09:13:09 GMT
References: <Pine.SGI.3.91.960205145920.16356A-100000@umbc9.umbc.edu>
Organization: Nara Institute of Science and Technology
Lines: 9
NNTP-Posting-Host: genome4.aist-nara.ac.jp
Mime-Version: 1.0
Content-Type: text/plain; charset=US-ASCII
X-Newsreader: mnews [version 1.18PL3] 1994-08/01(Mon)

> Could anyone out there tell me where I can find the latest version of E. 
> coli K-12 chromosome linkage map? I have the edition 7 (Bachmann, 1987). 

Refer to  Bachmann, B., (1990) Microbiol. Rev., 54, 130-197.
This may be the latest and the last linkage map by Bachmann.

The physical map of E. coli K-12 is also available through
http://bsw3.aist-nara.ac.jp, but note that these pages are still under
construction.

From owner-chromosomes@net.bio.net Mon Feb 19 22:00:00 1996
Path: biosci!daresbury!not-for-mail
From: e013mr02@area.ba.cnr.it (Mariano ROCCHI)
Newsgroups: bionet.genome.chromosomes
Subject: chromosome 6
Date: 20 Feb 1996 17:43:12 -0000
Lines: 15
Sender: lpddist@mserv1.dl.ac.uk
Distribution: bionet
Message-ID: <4gd17g$gmq@mserv1.dl.ac.uk>
X-Sender: e013mr02@193.205.35.100
Original-To: biochrom@dl.ac.uk

Does anyone have a defective rodent cell line suitable which can be used to
select the human chromosome 6 in somatic cell hybrids?
Thank in advance



Dr. Mariano Rocchi
Istituto di Genetica
Via Amendola 165/A
70126 Bari - Italy
tl  +39-80-544.3371
fax +39-80-544.3386
e-mail m.rocchi@area.ba.cnr.it 



From owner-chromosomes@net.bio.net Wed Feb 21 22:00:00 1996
Path: biosci!ns1.faseb.org!lamarck.sura.net!newsfeed.internetmci.com!vixen.cso.uiuc.edu!howland.reston.ans.net!surfnet.nl!sun4nl!xs4all!usenet
From: vic2000@easynet.co.uk (-vos-)
Newsgroups: bionet.genome.chromosomes
Subject: question: XYY-SYNDROM
Date: 22 Feb 1996 21:27:53 GMT
Organization: 1996
Lines: 7
Message-ID: <4gin4p$2rv@news.xs4all.nl>
NNTP-Posting-Host: asd04-18.dial.xs4all.nl
X-Newsreader: WinVN 0.92.6+

hello,

I want some information about the X-Y-Y chromosome SYNDROME
and it's hard to get the right info.
Can anybody give me ?
Thanks.
please email: vic2000@easynet.co.uk

From owner-chromosomes@net.bio.net Sun Feb 25 22:00:00 1996
Path: biosci!ODYSSEE.NET!dellaire
From: dellaire@ODYSSEE.NET (Graham Dellaire)
Newsgroups: bionet.genome.chromosomes
Subject: Anyone Used Mac Probe for FISH analysis???
Date: 26 Feb 1996 14:40:22 -0800
Organization: BIOSCI International Newsgroups for Molecular Biology
Lines: 19
Sender: daemon@net.bio.net
Distribution: world
Message-ID: <199602262237.RAA12148@atlas.odyssee.net>
NNTP-Posting-Host: net.bio.net

I have some graphics files from some Fluorescent In Situ Hyb. 
analysis. I was using MAC-PROBE to capture and digitize the 
photos....

Does anyone else have this program?  If you do... what kind of 
graphic files are they and how the hell do you open them (what 
software).  I can't seem to save it as anything other than the 
native file type the program uses!!!!


Help


Graham Dellaire
McGill University

dellaire@odyssee.net



From owner-chromosomes@net.bio.net Sun Feb 25 22:00:00 1996
Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.internetmci.com!howland.reston.ans.net!surfnet.nl!sun4nl!xs4all!usenet
From: foxsong@worldcity.nl (Hans Vosgezang)
Newsgroups: bionet.genome.chromosomes
Subject: Klinefelter Syndrome ?
Date: Mon, 26 Feb 1996 10:21:09 GMT
Organization: XS4ALL, networking for the masses
Lines: 43
Message-ID: <4gr214$lbq@news.xs4all.nl>
NNTP-Posting-Host: dyna1.worldcity.nl
X-Newsreader: Forte Free Agent 1.0.82

Hello All!
Here is a couple of questions about the Klinefelter syndrome. I am
myself are a Klinefelter and a member of the Klinefelter club of
Holland. We know allready a lot about these chromosome-deviation but
we don’t know how it works somewhere else, so...

1	What _is_ the Klinefelter Syndrome?

2a	What does the Klinefelter Syndrome mean to the man with this
syndrome?
2b	What does it mean to his parents?
2c	What does it mean to his partner?
2d	What does it mean to his family?

3a	What kind of medication is prescribed to treat the side-effect
of the Klinefelter syndrome?
	Meaning: Not an enlisted name, but what the medicine contains and how
it is administrated?
3b 	Why is a specific medicine prescribed to 	you, 
								your Klinefelter-son, 
								your Klinefelter-partner?

4a	Does the Klinefelter syndrome have certain characteristics?
4b	Does the Klinefelter syndrome have psychological
characteristics?
4c	Does the Klinefelter syndrome have psycho-social
characteristics?
4d	What can be done about these psychological and psycho-social
characteristics?

5	Does the Klinefelter syndrome have it’s limitations?

6	Are there aspects of the Klinefelter syndrome you would  like
to talk about?

7a	What scientific studies/resources are there, concerning the
Klinefelter syndrome?
7b	Are scientists left with unanswered questions after completing
their Klinefelter syndrome-studies?

Please, if you answer a question... would you answer by number?



From owner-chromosomes@net.bio.net Mon Feb 26 22:00:00 1996
Path: biosci!internet!biosci!not-for-mail
From: biohelp (BIOSCI Administrator)
Newsgroups: bionet.genome.chromosomes
Subject: IMPORTANT - BIOSCI Fundraising Update!
Date: 27 Feb 1996 02:01:15 -0800
Organization: BIOSCI International Newsgroups for Molecular Biology
Lines: 149
Sender: daemon@net.bio.net
Distribution: world
Message-ID: <199602271000.CAA14679@net.bio.net>
NNTP-Posting-Host: net.bio.net


I'm interrupting the usual monthly posting of the BIOSCI miniFAQ to
bring you up to date on BIOSCI fundraising progress, a topic of
concern to your future use of this resource.  Thank you in advance for
taking the time to read this message carefully.

Last year we announced that BIOSCI was going to adopt the U.S. Public
Broadcasting System model to fund its operations after our DOE/NSF
grant runs out later this year.  Unlike PBS, we are not soliciting
contributions from users; we are only selling ads on our Web pages
solely to cover our operating costs.  Our goal is to seek sponsorships
until we build up an operating reserve of about $100,000 and then
cease further promotions until we need to build the reserve back up.
(The accountants among our readership will be familiar with the
problem of deferred revenue which we can not safely utilize until ads
have been displayed for a period of time.)  We have three sponsors to
date with a couple more pending.  The process is time-consuming,
however, and we need your help as explained further below.

Our operating costs consist of our network connection, phone lines,
hardware maintenance (we hope to have new and faster hardware soon!),
plus 0.7 FTE of salaries covering UNIX systems admin, technical
support, quality assurance, i.e., testing, of our system, and
administrative costs (such as the time it takes to actually
find/write/call potential sponsors and raise money!).  Although the
BIOSCI staff does get compensated for a portion of the work that they
do, this project has always received a lot of free after-hours and
"vacation" time labor, so we hope that no one will begrudge the time
that we do charge to the project to serve you.  All of the three
part-time staff members, Dave Mack, Julie Lawrence, and myself, have
full time day jobs and families in addition to working hard to keep
this service running for all of you.  Julie and Dave Mack are
subcontractors for BIOSCI; my time that is charged to the project
defrays a portion of my regular salary instead of adding to my income.

Besides having to relocate the project, we were very busy this last
year building new infrastructure such as our WWW hypermail interface
to the system.  This was released last December along with scores of
WAIS indices for the newsgroups.  Virtually everything is complete,
although we do continue to find and fix bugs (many through your
helpful feedback!).  We are still having some problems with our WAIS
indexing.  The archives continue to grow rapidly.  We are running over
100 indexes now versus three previously and any systems crashes cause
greater havoc with the indexing than before!  We are still working to
fix this as fast as our resources permit and appreciate your patience,
but we have been able to automate a lot of the infrastructure to
reduce labor as compared to past requirements.

We have also implemented new software to make moderation of
BIOSCI/bionet newsgroups much easier and combat the growing problem of
Internet junk mail and USENET "spamming."  About 20% of our groups are
now moderated, many of them by the BIOSCI staff!  This, for example,
made a major difference last year in the quality of content in our
EMPLOYMENT/bionet.jobs.offered newsgroup which many commercial
concerns and recruiting firms are using **without charge** to recruit
candidates for positions in the biological sciences.

We are also now in a position to have sponsors for individual
newsgroups as you will have noticed if you have visited
http://www.bio.net/ and clicked on "Access the BIOSCI/bionet
newsgroups" recently.

So, how can you help??
----------------------

As noted above it can take a lot of time to contact potential sponsors
if I have to do it all myself.  Our request is quite simple.  You can
do two important things which will take very little time for you
individually.  

First, please use our WWW system at http://www.bio.net/ to access the
archives.  You can now post or reply to messages via your Web browser.
Your usage helps attract sponsors.  If you contact any of our
sponsors, please be sure to thank them for supporting BIOSCI.  It is
critical for them to get this feedback if they are to continue their
sponsorship for the long term.

Second, if you work for a company or organization that provides
products or services of interest to the biology community, please pass
this message on to your marketing or marketing communications
department or other appropriate group.  Please ask them to help
support BIOSCI by sponsoring our Web site and explain the uses and
benefits of the system to the biology community.  If they are
interested, they can then contact us for further information at our
tech support address, biosci-help@net.bio.net.

Our hope is to quickly raise several large corporate/institutional
sponsors on our heavily-used WWW locations (some stats appended
below), and then end this sponsorship campaign so that our resources
can continue to be used for service provision, not fundraising.  Many
of our specialty newsgroup WWW archives are still used by small
communities of scientists (and they haven't been heavily promoted
yet).  While these may be valuable niche markets to some advertisers,
it will generate more labor and overhead having to find these
sponsors, fairly price the locations, and deal with lots of smaller
sponsorships than fewer mid-to large sponsors.  We are striving to
keep our operation as lean and efficient as possible since we are not
trying to make careers out of running BIOSCI.  We are trying if at all
possible to avoid the administrative overhead entailed with processing
lots of small payments to reach our fundraising goals.

I'd like to thank all of you for your help in advance. In helping us,
you are also helping yourselves, not only in keeping this resource
available for all of the both large and small research communities
that we serve, but also by alleviating the need for us to go back and
compete with researchers for tight grant dollars!  We promised NSF
when we were awarded the BIOSCI grant that we would carry out this
mission to make the service self-supporting.  With your help, we will
succeed in continuing BIOSCI's work into its second decade.  Thank you
very much!

				Sincerely,

				Dave Kristofferson
				BIOSCI/bionet Manager

				biosci-help@net.bio.net


A list of our prime WWW sponsorship locations follow.  Statistics are
for the four week period from 22 Jan. - 18 Feb. 1996 and usage
continues to grow.
----------------------------------------------------------------------

The overall BIOSCI WWW pages are currently visited by users from close
to 5000 unique computer hosts per week.  Web servers only log the
Internet computer/host name and frequently more than one individual
can connect to us from a particular host.

Main home page, http://www.bio.net, visited recently by about 2100
unique hosts per week

Main Newsgroups archives page, http://www.bio.net/archives.html,
visited recently by about 1200 Unique hosts per week

BIO-JOURNALS archive page, http://www.bio.net/BIO-JOURNALS.html,
visited recently by about 1000 unique hosts per week.

EMPLOYMENT archive pages: http://www.bio.net:80/hypermail/EMPLOYMENT/ 
and monthly header pages, visited recently by about 600 unique hosts
per week.

Address database search page, http://www.bio.net/addrsearch.html,
visited recently by about 450 unique hosts per week.

Methods newsgroup archive pages, http://www.bio.net:80/hypermail/METHDS-
REAGNTS/ and monthly header pages, visited recently by about 350
unique hosts per week.
----------------------------------------------------------------------

From owner-chromosomes@net.bio.net Wed Feb 28 22:00:00 1996
Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!elroy.jpl.nasa.gov!swrinde!sgigate.sgi.com!fido.asd.sgi.com!news.neu.sgi.com!news
From: Reinhard Schneider <schneider@embl-heidelberg.de>
Newsgroups: bionet.genome.chromosomes
Subject: Yeast genome analysis on a SGI Supercomputer - demonstration project.
Date: Thu, 29 Feb 1996 21:58:37 +0100
Organization: EMBL
Lines: 67
Message-ID: <3136137D.15FB@embl-heidelberg.de>
NNTP-Posting-Host: epca4.neu.sgi.com
Mime-Version: 1.0
Content-Type: text/plain; charset=us-ascii
Content-Transfer-Encoding: 7bit
X-Mailer: Mozilla 2.0b6aS (X11; I; IRIX64 6.1 IP21)

GeneCrunch: See genome analysis on a supercomputer as it happens.
Watch the analysis of genome information live on the WWW, March 4-7,
1996.

In a joint demonstration project between Silicon Graphics and scientists 
from the EMBL-Heidelberg/EMBL-EBI the GeneQuiz software system will
analyze 
more than 6000 protein sequences from the genome of yeast (Saccharomyces 
cerevisiae) on a 64 processor SGI POWER CHALLENGEarray in just a few
days.

The project will demonstrate large-scale genome sequence analysis on an 
almost-complete set of yeast genes. The analysis will be repeated as
soon 
as the international collaborative effort of yeast researchers releases
to 
the public the complete genetic blueprint of yeast, scheduled for later 
this year.

The results on the likely biological function of many new genes will 
be of interest to biological researchers in both academia and industry. 
The results will be published on two internet Web sites as the analysis 
progresses, starting March 4th, 1996:

        http://genecrunch.sgi.com    http://genecrunch.sgi.ch

In addition to the biological results of the analysis, the sites will 
also contain information describing the  supercomputing and web
technology 
used.

GeneQuiz is an automated system for large-scale genome sequence
analysis.
It aims at adding value to biosequence information by predicting the 
biological function of the corresponding genes. GeneQuiz accesses
up-to-date
protein and DNA databases, derives information  by sophisticated search
and
analysis methods, and interprets any findings in terms of biological
function 
using expert rules.
It also predicts three-dimensional structures of protein molecules when 
these can be inferred by homology . The predicted functions are made
available 
in hyperlinked WWW tables and the predicted coordinates of 3D structures
in 
Protein Data Bank format. GeneQuiz is a collaborative effort between the
two 
EMBL institutes and former EMBL  scientists at CNB Madrid, MDC Berlin,
and 
SRI Meno Park.

The POWER CHALLENGEarray used for this project is located at the Silicon
Graphics European Supercomputing Technology Center in Cortaillod,
Switzerland. The POWER CHALLENGEarray consists of 4 POWER CHALLENGE
nodes 
each with 16 R8000 Processors linked together with the very fast HIPPI 
interfaces.


Reinhard Schneider and Georg Casari
Biological Structures and Biocomputing program
EMBL-Heidelberg

Chris Sander
European Bioinformatics Institute
EMBL-EBI

From owner-chromosomes@net.bio.net Thu Feb 29 22:00:00 1996
Path: biosci!bcm.tmc.edu!news.tamu.edu!news.utdallas.edu!news.starnet.net!wupost!ursa.smsu.edu!newsdist.tc.umn.edu!mayonews.mayo.edu!news
From: errabolu <errabolu@mayo.edu>
Newsgroups: bionet.genome.chromosomes
Subject: Cells lacking X or 18 chromosomes.
Date: 29 Feb 1996 22:56:38 GMT
Organization: Mayo Foundation
Lines: 7
Message-ID: <4h5av6$f37@tribune.mayo.edu>
NNTP-Posting-Host: molebio.mayo.edu

Hai Folks, I would like to know if you have come across a human cell
line(s) which are negative in chromosome X and 18. I am interested in
cell lines which have lost both these chromosomes or tumors whose
development and prognosis is affected by the loss of one or both
of the chromosomes. Thanks.

errabolu@mayo.edu

