From owner-chromosomes@net.bio.net Sun Jun 02 23:00:00 1996
Path: biosci!biosci!not-for-mail
From: lstein@genome.wi.mit.edu (Lincoln Stein)
Newsgroups: bionet.genome.chromosomes
Subject: RELEASE 10 OF WHITEHEAD/MIT MAP OF HUMAN GENOME
Date: 3 Jun 1996 10:52:27 -0700
Organization: Whitehead Institute for Biomedical Research
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                         ANNOUNCING:
      WHITEHEAD INSTITUTE/MIT CENTER FOR GENOME RESEARCH
               HUMAN GENOMIC MAPPING PROJECT 
                 DATA RELEASE 10 (MAY 1996)


The tenth release of data from the Human Physical Mapping
Project at the Whitehead Institute/MIT Genome Center, covering data
generated through the end of May, 1996, is now available.

This data release contains YAC screening data for 21,412 sequence tagged
sites (STSs) screened on the CEPH mega-YAC library.  For each STS, we
report addresses for the YACs found to contain the STS. From the data
obtained so far, there are 292 contigs assembled using single
linkage between STSs.

In addition, we also report a radiation hybrid map of the genome
containing 11599 STS markers mapped on the Genebridge Panel, as well
as integrations of the genetic, radiation hybrid and YAC contig
maps.

The data is available electronically in two ways.  

ANONYMOUS FTP: The entire data release is available as a set of
Microsoft Excel files and tab-delimited ascii files on our ftp
server.  Using an ftp client (such as "Fetch" on the Macintosh),
connect to 

	ftp-genome.wi.mit.edu

Use "anonymous" as your user name, and give your e-mail address as your
password.  The data files are present in the directory 
/distribution/human_STS_releases/may96.

The contents are as follows:

  5-96.INTRO.txt        Introduction to the data release, in straight text format
  5-96.INTRO.html       The same in HTML (World Wide Web) format
  5-96.STS2YAC.txt      STS & YAC screening data as tab-delimited text.
  chromosomes/          The same, split into smaller chromosome-specific files
  5-96.YAC2STS.txt      Inverse map of YAC to STS screening data
  5-96.CONTIG2STS.txt   YAC contig lists.
  5-96.CONTIG2STS.txt   The same, inverted.
  5-96.SEQUENCES.txt    Full sequences of STSs developed in-house.
  5-95.MAPPED.EST.txt   Cross reference between ESTs, IMAGE clones and map positions.
  5-96.ALIASES.txt      Cross reference of STS names.
  pictures/             Pictures of integrated maps in Macintosh and PS forms.
  rhmap/                Radiation hybrid maps.

The data is also available in compressed form using the gzip program.

THE WORLD-WIDE WEB: You will need a World Wide Web client such as
Mosaic (Unix, MS-Windows and Macintosh) or MacWeb (Macintosh). 
Instruct your client to connect to 

      http://www-genome.wi.mit.edu/

>From there, follow the "Human Physical Mapping Project" link.  You will be
able to browse and download the raw data set, view the individual and
integrated maps, and to get information on the radiation hybrid and
contig analyses.

All mapped STSs are available through the Genome Database (GDB) and
through GenBank.

QUESTIONS AND PROBLEMS.  If users have any questions or problems,
please contact us at human_STS_help@genome.wi.mit.edu We invite
suggestions about how to make these data release most useful.

DATA RELEASE POLICY AND CITATION.  Data releases are scheduled quarterly.
At the end of each quarter, all genomic mapping
data are reviewed and prepared for distribution via CGR's electronic
databases.  Data releases typically occur within a week of the
close of the month. Releases are announced by electronic messages 
posted to the following two newsgroups: "bionet.genome.chromosomes" and
"bionet.announce". 

CGR's data release policy aims to ensure that scientific colleagues
have immediate access to information that may assist them in the
search for genes. Data releases do not constitute scientific
publication of CGR's work, but rather provide scientists with a
regular look into our lab notebooks.   For projects aimed at the
analysis of particular genes or subchromosomal regions, permission is
hereby granted to use our data without the need for a formal
collaboration, subject only to appropriate acknowledgment.   For
projects aimed at large-scale mapping of entire chromosomes or entire
genomes, use of the data and markers should be on a collaborative
basis.

The information for the human genome mapping project should be cited
as: Whitehead Institute/MIT Center for Genome Research, Human Physical
Mapping Project, Data Release 10 (May 1996).



-- 
Lincoln D. Stein                Whitehead Institute/MIT Genome Center
lstein@genome.wi.mit.edu	Cambridge, MA 02142
             http://www-genome.wi.mit.edu/~lstein




From owner-chromosomes@net.bio.net Mon Jun 03 23:00:00 1996
Path: biosci!bcm.tmc.edu!pendragon!news.msfc.nasa.gov!newsfeed.internetmci.com!howland.reston.ans.net!EU.net!ieunet!web3.tcd.ie!cmegan.gen.tcd.ie!user
From: dmachugh@mail.tcd.ie (David MacHugh)
Newsgroups: bionet.genome.chromosomes
Subject: HGMP - current status?
Date: Tue, 04 Jun 1996 13:18:26 +0000
Organization: Genetics Department, Trinity College, Dublin 2
Lines: 22
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NNTP-Posting-Host: cmegan.gen.tcd.ie

Hi,

Just a quick query.  Does anyone have a rough idea what the current status
of the human genome linkage map is.  In particular, I would like to know
how many type I markers and how many type II markers have been identified
and mapped.

Thanks in advance,


David MacHugh

-- 

    *********************************************************************
    *         (__)  David MacHugh PhD,   E-mail: dmachugh@mail.tcd.ie  *
    *         (@*)  Bovine Genetics,      Phone:  (353)-1-6081088       *
    *  /-------\u'  Genetics Department,  Fax:    (353)-1-6798558       *
    * / |     ||    Trinity College,                                    *
    *   ||----||    Dublin 2.                                           *
    *   ^^    ^^    Ireland.                                            *
    *********************************************************************

From owner-chromosomes@net.bio.net Tue Jun 04 23:00:00 1996
Path: biosci!daresbury!hgmp.mrc.ac.uk!news
From: Margaret Leversha <mal@sanger.ac.uk>
Newsgroups: bionet.molbio.methds-reagnts,bionet.genome.chromosomes
Subject: DNA fibre FISH blues
Date: 5 Jun 1996 10:15:07 GMT
Organization: The Sanger Centre
Lines: 33
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Xref: biosci bionet.molbio.methds-reagnts:45353 bionet.genome.chromosomes:1204

I would like to hear about the experiences of FISH-mappers out there 
doing DNA fibre-FISH.  

Our experience is that it is extremely variable.  I have had batches of 
test slides which were a dream to analyse, and have yet to get any more 
which approach that.  Often, after analysing the whole slide, we have 
signals in all possible permuations!

Often we find that less than 10% of slides prepared by alkaline lysis 
(Fidlerova et al., 1994) are worth even using for hybridisation.  It 
seems that DNA release is so rapid that most of the DNA is lost off the 
slide.  Treating the slides with poly-L-lysine or APES doesn't seem to 
help.  Any suggestions, discussion would be greatly appreciated, but 
particularly addressing the following questions:

1. What method works best, and CONSISTENTLY?  

2. How long did it take to get the technique working in your lab?

3. Does it give sensible results in experimental situations?  (ie. can 
you interpret the data without prior knowledge of the result?)

4. What are the critical factors in getting the technique to work?

Thanks in advance,

Margaret

Dr. Margaret A. Leversha
The Sanger Centre
Cambridge



From owner-chromosomes@net.bio.net Thu Jun 06 23:00:00 1996
Path: biosci!daresbury!nntp-trd.UNINETT.no!Norway.EU.net!nntp.uio.no!news.cais.net!newsfeed.internetmci.com!howland.reston.ans.net!surfnet.nl!highway.leidenuniv.nl!usenet
From: Hans Dauwerse <dauw@ruly46.medfac.leidenuniv.nl>
Newsgroups: bionet.molbio.methds-reagnts,bionet.genome.chromosomes
Subject: Re: DNA fibre FISH blues
Date: Fri, 07 Jun 1996 10:19:11 +0200
Organization: Leiden University, The Netherlands
Lines: 31
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To: Margaret Leversha <mal@sanger.ac.uk>
Xref: biosci bionet.molbio.methds-reagnts:45455 bionet.genome.chromosomes:1205

Hello Margaret
Lets share some experiences with Fiber FISH.
As you probably know here in Leiden the Halo technique was 
develloped. This is a good reproducible technique only it is 
very laborious. Therefore we tried the Dervish technique but 
this turned out to be very reproducible and one of the 
biggest disadvantages is that there are a lot of DNA breaks 
in the fibers giving rise to strange hyb results. DNA breaks 
are due to the force you put on the DNA after lysing the 
cells, for Dervish this is gravity, for the Fidlerova method 
this is the sliding of the coverslip.
We have develloped a new method which is reproducible but 
there is always some variation between the slides. You can 
first DAPI stain the slides and look at them defore using.
We use unfixed cells and a very gentle lysis method. We 
found out that coated slides are essential, APES gives the 
best results, else you lose to much DNA during the 
hybridization procedures. Denature the slides only 1-2 min..
Another striking observation is that certain areas on the 
slides give the nicest fibers in most cases at the edges, so 
try to probe the entire slide.
For your point 2), this is difficult to answer. As we have 
quite a lot of experience with FISH it did not really take 
long to get things working. Adjusting protocols to our needs 
took us a couple of month. 
For point 3). Thats were you use it for, to find out new 
things.
I allready answered point 4.
If you are interested in the method you can email me.

Hans

From owner-chromosomes@net.bio.net Fri Jun 07 23:00:00 1996
Path: biosci!rutgers!uwm.edu!newsfeed.internetmci.com!howland.reston.ans.net!news-e2a.gnn.com!newstf01.news.aol.com!newsbf02.news.aol.com!not-for-mail
From: kabass@aol.com (KABass)
Newsgroups: bionet.genome.chromosomes
Subject: * transloc chrom help please
Date: 8 Jun 1996 09:07:17 -0400
Organization: America Online, Inc. (1-800-827-6364)
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I am writing on behalf of a frightened, pregnant friend of mine who's
fetus has a balanced translocated chromosome (breaks at 7 Q34 and 13 Q12).
 Her genetic counselor has not been much help.  Neither parent shows the
trait.

She's found recorded evidence of abnormality with translocations at 7 Q32
and & 7 Q36.  She's been told that even if a translocation identical to
hers had been found in a past study, the researcher would only have
published results if an abnormality had resulted.

How do we find someone with the same translocation to determine what the
effect may be on the child?  She's in NYC so has access to some good
doctors, but she's hoping someone from the 'net community may be able to
offer some innovative ideas for how to approach this dilemma.  

Much thanks--
Tim Walter
timothy@aspeninst.org or kabass@aol.com
202-736-5834 (day)

From owner-chromosomes@net.bio.net Sun Jun 09 23:00:00 1996
Path: biosci!ihnp4.ucsd.edu!swrinde!newsfeed.internetmci.com!csn!nntp-xfer-1.csn.net!magnus.acs.ohio-state.edu!ts40-11.homenet.ohio-state.edu!user
From: snyder.9@osu.edu (Pam Snyder)
Newsgroups: bionet.genome.chromosomes
Subject: Re: * transloc chrom help please
Date: Fri, 07 Jun 1996 23:13:46 -0500
Organization: Just me
Lines: 29
Message-ID: <snyder.9-0706962313460001@ts40-11.homenet.ohio-state.edu>
References: <4pbtu5$sfc@newsbf02.news.aol.com>
NNTP-Posting-Host: ts40-11.homenet.ohio-state.edu

In article <4pbtu5$sfc@newsbf02.news.aol.com>, kabass@aol.com (KABass) wrote:

> I am writing on behalf of a frightened, pregnant friend of mine who's
> fetus has a balanced translocated chromosome (breaks at 7 Q34 and 13 Q12).
>  Her genetic counselor has not been much help.  Neither parent shows the
> trait.
> 
> She's found recorded evidence of abnormality with translocations at 7 Q32
> and & 7 Q36.  She's been told that even if a translocation identical to
> hers had been found in a past study, the researcher would only have
> published results if an abnormality had resulted.
> 
> How do we find someone with the same translocation to determine what the
> effect may be on the child?  She's in NYC so has access to some good
> doctors, but she's hoping someone from the 'net community may be able to
> offer some innovative ideas for how to approach this dilemma.  
> 
> Much thanks--
> Tim Walter
> timothy@aspeninst.org or kabass@aol.com
> 202-736-5834 (day)

I work in a molecular pathology lab, so am not of much help here. I will
pass the question by our "sister" cytogenetics lab to see if they have any
info.  But I suppose that's where your friend got her info to begin with.

A question though, why where chromosomes done on the fetus to begin with? 
An abnormal ultrasound? Maternal age? Questionable lab values?  I might
make a difference in a person's evaluation of the question

From owner-chromosomes@net.bio.net Sun Jun 09 23:00:00 1996
Path: biosci!agate!spool.mu.edu!usenet.eel.ufl.edu!news.ultranet.com!homer.alpha.net!uwm.edu!news.cse.psu.edu!rutgers!concert!newz.oit.unc.edu!usenet
From: Ange-Marie Hancock <angemari@gibbs.oit.unc.edu>
Newsgroups: bionet.genome.chromosomes
Subject: CONTIG GAPS -- REQUEST FOR INFO
Date: 10 Jun 1996 14:16:38 GMT
Organization: University of North Carolina Chapel Hill Dept. of Poli Sci
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Dear Human Genome Researchers,

Our laboratory has developed strategies to bridge contig gaps occurring 
at human genomic regions which cannot be cloned and/or maintained 
faithfully in bacteria using the large cloning systems (PI/BAC/PAC, 
etc.).  Such strategies derive from the original HAEC technology which 
allows direct cloning of DNA in human cells as Human Artificial Episomal 
Chromosomes (Nature Genetics 8:33-41, 1994; Methods in Molecular Genetics 
8:167-188, 1996).

We have now entered the phase of testing such technology for 
proof-of-concept.  We will provide the human genome community with a 
resource to isolate and sequence refractory contig gaps.  Hence, we are 
interested in hearing from the human genome community about persistent 
and refractory genomic gaps in order to identify potential candidates for 
the HAEC bridging technology.  Suitable candidates are gaps which have 
been thoroughly tested on highly redundant large bacterial and yeast 
libraries and also shown to be missing in libraries prepared with 
different restriction enzymes.

Interested human genome laboratories should send their e-mail reply to 
the attention of Jean-Michel Vos at the following address:  
angemari@gibbs.oit.unc.edu.

Dr. Jean-Michel H. Vos
349 Lineberger Comprehensive Cancer Center
School of Medicine CB#7295
University of North Carolina at Chapel Hill
Chapel Hill, NC  27599-7295

Fax:  919-966-3015
Vos Lab web page:  http://www.med.unc.edu/wrkunits/3ctrpgm/lccc/VOSlab


From owner-chromosomes@net.bio.net Sun Jun 09 23:00:00 1996
Path: biosci!galaxy.ucr.edu!ihnp4.ucsd.edu!swrinde!howland.reston.ans.net!vixen.cso.uiuc.edu!uwm.edu!news.cse.psu.edu!rutgers!news.cis.ohio-state.edu!magnus.acs.ohio-state.edu!ts40-11.homenet.ohio-state.edu!user
From: snyder.9@osu.edu (Pam Snyder)
Newsgroups: bionet.genome.chromosomes
Subject: Re: * transloc chrom help please
Date: Fri, 07 Jun 1996 23:15:01 -0500
Organization: Just me
Lines: 3
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References: <4pbtu5$sfc@newsbf02.news.aol.com>
NNTP-Posting-Host: ts40-11.homenet.ohio-state.edu



that should read "it might make a difference .....

From owner-chromosomes@net.bio.net Sun Jun 09 23:00:00 1996
Path: biosci!agate!spool.mu.edu!usenet.eel.ufl.edu!newsfeed.internetmci.com!chi-news.cic.net!cougar.olivet.edu!reed-006.olivet.edu!dginn
From: dginn@olivet.edu
Newsgroups: bionet.genome.chromosomes
Subject: Rat Type I collagen cDNA probe needed
Date: Mon, 10 Jun 1996 14:38:10 +1000
Organization: Olivet Nazarene University
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Greetings,
I am looking for a plasmid probe with a cDNA sequence for Rat Type I collagen gene 
[alpha1(I) and/or alpha2(I)].  Does anyone know where I could get ahold of this 
probe - either a company or a laboratory?  

Thanks a lot!
Dwight Ginn <dginn@olivet.edu>
Olivet Nazarene University



From owner-chromosomes@net.bio.net Sun Jun 09 23:00:00 1996
Path: biosci!daresbury!nntp-trd.UNINETT.no!nntp.uio.no!news.cais.net!news.structured.net!usenet
From: m3995@jorsm.com (Eric W Blissmer)
Newsgroups: bionet.genome.chromosomes
Subject: RECYCLE your used TYVEK coverall garments- we offer to buy them!
Date: 10 Jun 1996 19:15:47 GMT
Organization: JORSM Internet
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445 Junction Av.              Email: m3995@jorsm.com	
Schererville, IN 46375

CHECK OUT OUR WEB PAGE FOR MORE INFO: http://crown.icongrp.com/~mpe/

From owner-chromosomes@net.bio.net Sun Jun 09 23:00:00 1996
Path: biosci!bcm.tmc.edu!pendragon!news.msfc.nasa.gov!elroy.jpl.nasa.gov!swrinde!newsfeed.internetmci.com!chi-news.cic.net!nntp.coast.net!netnews.worldnet.att.net!ix.netcom.com!news
From: hk-miami@ix.netcom.com(HK)
Newsgroups: bionet.genome.chromosomes
Subject: Re: * transloc chrom help please
Date: 10 Jun 1996 20:38:21 GMT
Organization: Netcom
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X-NETCOM-Date: Mon Jun 10  3:38:21 PM CDT 1996

In <4pbtu5$sfc@newsbf02.news.aol.com> kabass@aol.com (KABass) writes: 
>
>I am writing on behalf of a frightened, pregnant friend of mine who's
>fetus has a balanced translocated chromosome (breaks at 7 Q34 and 13
Q12).
> Her genetic counselor has not been much help.  Neither parent shows
the
>trait.
>
>She's found recorded evidence of abnormality with translocations at 7
Q32
>and & 7 Q36.  She's been told that even if a translocation identical
to
>hers had been found in a past study, the researcher would only have
>published results if an abnormality had resulted.
>
>How do we find someone with the same translocation to determine what
the
>effect may be on the child?  She's in NYC so has access to some good
>doctors, but she's hoping someone from the 'net community may be able
to
>offer some innovative ideas for how to approach this dilemma.  
>
>Much thanks--
>Tim Walter
>timothy@aspeninst.org or kabass@aol.com
>202-736-5834 (day)
=====================================================
If it's balanced, as they say it is, it shouldn't have any effect at
all.  The potential for problems would be in any child the affected
individual may have (which can also be detected ahead of time by
amnio).

HK

From owner-chromosomes@net.bio.net Mon Jun 10 23:00:00 1996
Path: biosci!news.Stanford.EDU!usenet
From: faraco@cmgm.stanford.edu
Newsgroups: bionet.genome.chromosomes
Subject: Re: * transloc chrom help please
Date: Mon, 10 Jun 1996 18:32:36 -0700
Organization: Stanford University
Lines: 44
Message-ID: <31BCCCB4.5496@cmgm.stanford.edu>
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HK wrote:
> 
> In <4pbtu5$sfc@newsbf02.news.aol.com> kabass@aol.com (KABass) writes:
> >
> >I am writing on behalf of a frightened, pregnant friend of mine who's
> >fetus has a balanced translocated chromosome (breaks at 7 Q34 and 13
> Q12).
> > Her genetic counselor has not been much help.  Neither parent shows
> the
> >trait.
> >
> >She's found recorded evidence of abnormality with translocations at 7
> Q32
> >and & 7 Q36.  She's been told that even if a translocation identical
> to
> >hers had been found in a past study, the researcher would only have
> >published results if an abnormality had resulted.
> >
> >How do we find someone with the same translocation to determine what
> the
> >effect may be on the child?  She's in NYC so has access to some good
> >doctors, but she's hoping someone from the 'net community may be able
> to
> >offer some innovative ideas for how to approach this dilemma.
> >
> >Much thanks--
> >Tim Walter
> >timothy@aspeninst.org or kabass@aol.com
> >202-736-5834 (day)
> =====================================================
> If it's balanced, as they say it is, it shouldn't have any effect at
> all.  The potential for problems would be in any child the affected
> individual may have (which can also be detected ahead of time by
> amnio).
> 
> HK


I strongly disagree with the above, and think this was an irresponsible
post. This isn't theory on a first year exam. This is a question of
potential life or death of a real fetus. The real problem is that
nobody can say whether this child will be normal. There isn't a simple
way of determining whether, or how much DNA was lost during the
translocation process.

From owner-chromosomes@net.bio.net Mon Jun 10 23:00:00 1996
Path: biosci!med.ruu.nl!P.L.PEARSON
From: P.L.PEARSON@med.ruu.nl (P.L.Pearson)
Newsgroups: bionet.genome.chromosomes
Subject: translocations
Date: 11 Jun 1996 06:09:22 -0700
Organization: BIOSCI International Newsgroups for Molecular Biology
Lines: 20
Sender: daemon@net.bio.net
Distribution: world
Message-ID: <v01530500ade319e542ce@[131.211.155.234]>
NNTP-Posting-Host: net.bio.net

Dear Tim, Ignore the posting in reply to your question on the genetic risks
of a new apparently balanced translocation in which it was stated that
there was no increased risk. That is just NOT true. For a de novo
"balanced" translocation there is a risk of congenital abnormalities
somewhere between 5% and 10%. The reason for that is that the translocation
may not be entirely balanced and may have gained or lost some genetic
material below the resolving power of the light microscope. Another
possibility is that the breakpoint could have gone right through a coding
sequence which would almost certainly inactivate the gene concerned. The
only way you can be reasonably certain that everything is ok if there is at
least one normal, healthy being carrying an identical translocation and by
identical I mean identical by inheritance (descent) and not just that the
breakpoints are in the same location as other known balanced
translocations. I agree with the last posting which stated that the advise
you received was dangerous.

        Peter Pearson,
        Dept Human Genetics, Utrecht



From owner-chromosomes@net.bio.net Mon Jun 10 23:00:00 1996
Path: biosci!daresbury!hgmp.mrc.ac.uk!plinehan
From: plinehan@hgmp.mrc.ac.uk (Mr. P.F. Linehan)
Newsgroups: bionet.genome.chromosomes
Subject: Re: * transloc chrom help please
Date: 11 Jun 1996 12:41:02 GMT
Organization: MRC Human Genome Resource Centre
Lines: 50
Message-ID: <4pjpgu$rqg@mercury.hgmp.mrc.ac.uk>
References: <4pbtu5$sfc@newsbf02.news.aol.com> <4pi13t$791@dfw-ixnews7.ix.netcom.com>
NNTP-Posting-Host: tin.hgmp.mrc.ac.uk

In article <4pi13t$791@dfw-ixnews7.ix.netcom.com> hk-miami@ix.netcom.com(HK) writes:
.>In <4pbtu5$sfc@newsbf02.news.aol.com> kabass@aol.com (KABass) writes: 
.>>
.>>I am writing on behalf of a frightened, pregnant friend of mine who's
.>>fetus has a balanced translocated chromosome (breaks at 7 Q34 and 13
.>Q12).
.>> Her genetic counselor has not been much help.  Neither parent shows
.>the
.>>trait.
.>>
.>>She's found recorded evidence of abnormality with translocations at 7
.>Q32
.>>and & 7 Q36.  She's been told that even if a translocation identical
.>to
.>>hers had been found in a past study, the researcher would only have
.>>published results if an abnormality had resulted.
.>>
.>>How do we find someone with the same translocation to determine what
.>the
.>>effect may be on the child?  She's in NYC so has access to some good
.>>doctors, but she's hoping someone from the 'net community may be able
.>to
.>>offer some innovative ideas for how to approach this dilemma.  
.>>
.>>Much thanks--
.>>Tim Walter
.>>timothy@aspeninst.org or kabass@aol.com
.>>202-736-5834 (day)
.>=====================================================
.>If it's balanced, as they say it is, it shouldn't have any effect at
.>all.  The potential for problems would be in any child the affected
.>individual may have (which can also be detected ahead of time by
.>amnio).

I'm not certain that this is absolutely true. One would have to
be sure that the translocation had not occurred at or near an
important gene. Given current knowledge, I don't think this
is an easy one to call.


Paul...






.>HK



From owner-chromosomes@net.bio.net Tue Jun 11 23:00:00 1996
Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!elroy.jpl.nasa.gov!lll-winken.llnl.gov!fnnews.fnal.gov!nntp-server.caltech.edu!news
From: "Dr. Ung-Jin Kim" <ung@caltech.edu>
Newsgroups: bionet.genome.chromosomes
Subject: CalTech Genome Resaerch Laboratory hires people
Date: Wed, 12 Jun 1996 15:06:56 -0700
Organization: Division of Biology, 147-75
Lines: 35
Message-ID: <31BF3F80.1953@caltech.edu>
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Job 1: We are looking for a few lab assistants
 
 
Caltech Genome Research Laboratory is looking for qualified
full time technicians with experiences in laboratory works 
involving recombinant DNA procedures. Works will require 
skills in colony hybridization, PCR screening of genomic 
libraries, DNA preparation, restriction fingerprint analysis, 
and more.
 
Positions are open immediately. A college degree in Biological 
sciences or other sciences required. Interested parties should 
send CV and salary requirement to Dr. Ung-Jin Kim
Electronic submissions are welcome.
 
Job 2: We are looking for a bioinformatician
 
Caltech Genome Research Laboratory is looking for a full time
informatician to manage and analyze laboratory data, and help 
operate robotic workstations. Knowledge and experieince in 
handling biological information, especially in the analysis 
and management of physcal mapping and DNA sequence data is 
essential. Familiarity with ACeDB database is desired. We also 
expect the person to be familiar with Unix server/workstations 
as well as PC/MacIntosh platforms. 

Interested parties should send CV and salary requirement/history 
to Dr. Kim. Electronic submissions are welcome.
Caltech provides employees with excellent work environment and 
benefit packages.
We will notify the applicants if an interview is necessary soon 
after reviewing their applications.
 
Please check our WEB page http://www.tree.caltech.edu for your
information on our projects.

From owner-chromosomes@net.bio.net Tue Jun 11 23:00:00 1996
Path: biosci!daresbury!nntp-trd.UNINETT.no!nntp.uio.no!Norway.EU.net!EU.net!howland.reston.ans.net!news-e2a.gnn.com!newstf01.news.aol.com!newsbf02.news.aol.com!not-for-mail
From: avpistol@aol.com (AVPistol)
Newsgroups: bionet.genome.chromosomes
Subject: Re: * transloc chrom help please
Date: 12 Jun 1996 00:39:35 -0400
Organization: America Online, Inc. (1-800-827-6364)
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X-Newsreader: AOL Offline Reader

In article <31BCCCB4.5496@cmgm.stanford.edu>, faraco@cmgm.stanford.edu
writes:

>There isn't a simple
>way of determining whether, or how much DNA was lost during the
>translocation process.

Would it also be a concern that the change in position will affect the
expression of some genes?  At least near the break points?

From owner-chromosomes@net.bio.net Wed Jun 12 23:00:00 1996
Path: biosci!bcm.tmc.edu!pendragon!news.msfc.nasa.gov!newsfeed.internetmci.com!news.uoregon.edu!vixen.cso.uiuc.edu!howland.reston.ans.net!news-e2a.gnn.com!newstf01.news.aol.com!newsbf02.news.aol.com!not-for-mail
From: kabass@aol.com (KABass)
Newsgroups: bionet.genome.chromosomes
Subject: Re: translocations
Date: 13 Jun 1996 00:41:34 -0400
Organization: America Online, Inc. (1-800-827-6364)
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Message-ID: <4po65u$6sg@newsbf02.news.aol.com>
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Reply-To: kabass@aol.com (KABass)
NNTP-Posting-Host: newsbf02.mail.aol.com

Thanks for the replies we've been receiving on the fetal translocated
chromosome problem.  It's wonderful to be able to ask questions of the
scientific community in this way.  Through the work of readers on this
newsgroup (and their colleagues), I've heard replies (and corrections)
from around the world leading to several experts and experimental options
that Sherry's doctor's had not discussed with her.  While I can't say what
the overall impact will be of your input, it is empowering to tackle these
tough questions knowing all avenues have been explored.  
Thanks again.  
Tim Walter
kabass@aol.com

From owner-chromosomes@net.bio.net Thu Jun 13 23:00:00 1996
Path: biosci!bcm.tmc.edu!pendragon!news.msfc.nasa.gov!elroy.jpl.nasa.gov!swrinde!newsfeed.internetmci.com!uwm.edu!news-res.gsl.net!news.gsl.net!nntp.coast.net!howland.reston.ans.net!news-e2a.gnn.com!pop.gnn.com!JUNCAR
From: JUNCAR@gnn.com (CAROLYN  GROSE)
Newsgroups: bionet.genome.chromosomes
Subject: help retrieving old postings
Date: Fri, 14 Jun 1996 10:55:26
Organization: GNN
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X-Mailer: GNNmessenger 1.3

i mistakenly purged all postings before today.  is there any way to 
get them back? i'm new at this.


From owner-chromosomes@net.bio.net Thu Jun 13 23:00:00 1996
Path: biosci!bcm.tmc.edu!pendragon!news.msfc.nasa.gov!newsfeed.internetmci.com!newsxfer2.itd.umich.edu!netnews.worldnet.att.net!ix.netcom.com!news
From: hk-miami@ix.netcom.com(HK)
Newsgroups: bionet.genome.chromosomes
Subject: Re: help retrieving old postings
Date: 14 Jun 1996 22:40:25 GMT
Organization: Netcom
Lines: 9
Message-ID: <4pspop$dmc@dfw-ixnews8.ix.netcom.com>
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X-NETCOM-Date: Fri Jun 14  5:40:25 PM CDT 1996

In <4pruet$9ri@news-e2d.gnn.com> JUNCAR@gnn.com (CAROLYN  GROSE)
writes: 
>
>i mistakenly purged all postings before today.  is there any way to 
>get them back? i'm new at this.
>==========================================
doesn't it depend on which news reader you are using ??????

HK

From owner-chromosomes@net.bio.net Thu Jun 13 23:00:00 1996
Path: biosci!bcm.tmc.edu!pendragon!news.msfc.nasa.gov!elroy.jpl.nasa.gov!swrinde!howland.reston.ans.net!news-e2a.gnn.com!pop.gnn.com!JUNCAR
From: JUNCAR@gnn.com (CAROLYN  GROSE)
Newsgroups: bionet.genome.chromosomes
Subject: amniocentesis and hgp
Date: Fri, 14 Jun 1996 11:30:27
Organization: GNN
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i am doing research on amniocentesis and the human genome project, 
particularly the ethical questions raised by the hgp in the context 
of abortion as a result of discovery of certain genes.  any ideas 
on where to go for up to date, progressive information? thanks -- 
june bogen.


From owner-chromosomes@net.bio.net Sat Jun 15 23:00:00 1996
Path: biosci!bloom-beacon.mit.edu!senator-bedfellow.mit.edu!colkin
From: colkin@athena.mit.edu (Catherine B Olkin)
Newsgroups: bionet.genome.chromosomes
Subject: balanced translocations and viable embryos
Date: 16 Jun 1996 22:07:37 GMT
Organization: Massachusetts Institute of Technology
Lines: 49
Message-ID: <4q20j9$gin@senator-bedfellow.MIT.EDU>
NNTP-Posting-Host: astron.mit.edu

I also have a question about balanced translocations.
In Feb 1996, I was about 20 weeks pregnant when I
found out my baby would not live because she had
too much genetic material.  Please excuse my simplistic
terms -- I am an astronomer not a geneticist.  Tests
of myself and my husband revealed that I have a
balanced translocation of chromosomes 7 and 22.
My daughter had too much chromosome #7.  My husband
has no chromosome problems, neither do my parents,
therefore the mutation occured in me.
From the genetic councelor, I learned that it is
unlikely that anyone else in the world would have
the exact same translocation (since my parents
don't have it).

The probabilities of having a child with the chromosome
structure my daughter had was quoted to me as
1/10000 even given my translocation.  Also I learned
that only 50% of my eggs would be viable.

Now my husband and I have been trying to concieve 
for a year and my doctor is recommending
IUI (intrauterine insemination).  I was thinking
maybe I should just have IVF since the zygote could
be tested before implantation to be sure it is viable. 
I know this is not an infertility newsgroup, but the 
heart of the matter concerns the chances of having a viable baby
given my translocation.

If I am the only person with my translocation, then
there seems to be a large uncertainty in any quoted
probabilities because they would be derived from
a distinctly different sample group.  So how could
one know that all of my eggs will not be non-viable?

One other bit of history: in the spring of 1994 I had
a miscarriage which is now being attributed to my
translocation.

I would appreciate any opinions or suggestions.

Thanks,
Cathy

PS.  I have never posted to a newsgroup before,
I hope this works.  I have been reading this
one for about 8 months though.



From owner-chromosomes@net.bio.net Sat Jun 15 23:00:00 1996
Path: biosci!galaxy.ucr.edu!ihnp4.ucsd.edu!munnari.OZ.AU!news.mel.connect.com.au!harbinger.cc.monash.edu.au!nntp.coast.net!howland.reston.ans.net!vixen.cso.uiuc.edu!usenet.ucs.indiana.edu!sunflower.bio.indiana.edu!gilbertd
From: gilbertd@sunflower.bio.indiana.edu (Don Gilbert)
Newsgroups: bionet.genome.chromosomes
Subject: Re: help retrieving old postings
Date: 14 Jun 1996 18:10:40 GMT
Organization: Biology, Indiana University - Bloomington
Lines: 14
Message-ID: <4ps9v0$3lg@usenet.ucs.indiana.edu>
References: <4pruet$9ri@news-e2d.gnn.com>
NNTP-Posting-Host: sunflower.bio.indiana.edu

Depending on your news browser software, you may be able to change a setting
in it to see older news, but typically only a week or two old.

The best places to find older bionet postings are at bionet archives,
  http://www.bio.net/   or
  http://iubio.bio.indiana.edu/   (also available thru ftp and gopher)

Look for the sections of bionet news in either of these.  They go
back several years, and include the most recent articles as well.

-- don

-- 
-- d.gilbert--biocomputing--indiana u--bloomington--gilbertd@bio.indiana.edu

From owner-chromosomes@net.bio.net Sun Jun 16 23:00:00 1996
Path: biosci!daresbury!hgmp.mrc.ac.uk!plinehan
From: plinehan@hgmp.mrc.ac.uk (Mr. P.F. Linehan)
Newsgroups: bionet.genome.chromosomes
Subject: Re: layman questions
Date: 17 Jun 1996 12:31:29 GMT
Organization: MRC Human Genome Resource Centre
Lines: 30
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References: <4q3g32$62n@grissom.powerup.com.au>
NNTP-Posting-Host: tin.hgmp.mrc.ac.uk

In article <4q3g32$62n@grissom.powerup.com.au> immortal@powerup.com.au writes:
>if someone could answer these questions it would be appreciated
>
>1.is a persons genetic blueprint in every cell of the body ??

As a general rule yes. Red blood cells are the obvious exception.
They start out with nuclei but these are expelled as the rbc
matures.



>2.if this is so does it include hair nails saliva blood (outside of the 
>body)

Nails, AFIK are deposits of keratin, so one would not expect to 
find DNA "in" nails. On the surface of nails and underneath
there is certainly DNA (scratching &c) belonging to the 
individual. 


>3again if this is so does the blue print remain and for how long ?

Life generally (except for rbc's).

Paul...



>charles


From owner-chromosomes@net.bio.net Sun Jun 16 23:00:00 1996
Path: biosci!UIDAHO.EDU!uidaho.edu
From: uidaho.edu@UIDAHO.EDU ("Josh Udall")
Newsgroups: bionet.genome.chromosomes
Subject: (none)
Date: 17 Jun 1996 15:59:19 -0700
Organization: BIOSCI International Newsgroups for Molecular Biology
Lines: 1
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Distribution: world
Message-ID: <199606172255.PAA13020@crow.csrv.uidaho.edu>
Reply-To: judall@uidaho.edu
NNTP-Posting-Host: net.bio.net

subscribe

From owner-chromosomes@net.bio.net Sun Jun 16 23:00:00 1996
Path: biosci!galaxy.ucr.edu!ihnp4.ucsd.edu!munnari.OZ.AU!news.mel.connect.com.au!news.syd.connect.com.au!news.bri.connect.com.au!grissom.powerup.com.au!usenet
From: immortal@powerup.com.au (charles lajoie)
Newsgroups: bionet.genome.chromosomes
Subject: layman questions
Date: 17 Jun 1996 11:38:10 GMT
Organization: Power Up
Lines: 15
Message-ID: <4q3g32$62n@grissom.powerup.com.au>
Reply-To: immortal@powerup.com.au
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X-Newsreader: WinVN 0.93.11

if someone could answer these questions it would be appreciated

1.is a persons genetic blueprint in every cell of the body ??

2.if this is so does it include hair nails saliva blood (outside of the 
body)

3again if this is so does the blue print remain and for how long ?

 i hope some learned person can answer this for me...

thanx ,

charles


From owner-chromosomes@net.bio.net Wed Jun 19 23:00:00 1996
Path: biosci!daresbury!nntp-trd.UNINETT.no!Norway.EU.net!EU.net!usenet2.news.uk.psi.net!uknet!usenet1.news.uk.psi.net!uknet!tank.news.pipex.net!pipex!oleane!in2p3.fr!swidir.switch.ch!nntp.coast.net!howland.reston.ans.net!vixen.cso.uiuc.edu!newsfeed.internetmci.com!in1.uu.net!news-m01.ny.us.ibm.net!news.biu.ac.il!news.huji.ac.il!wisipc.weizmann.ac.il!news
Newsgroups: bionet.genome.chromosomes
Subject: The Genome Database - an Open Day
Message-ID: <31C943C6.5387@dapsas1.weizmann.ac.il>
From: Vered Chalifa-Caspi <lhchalif@dapsas1.weizmann.ac.il>
Date: Thu, 20 Jun 1996 12:27:50 GMT
Reply-To: lhchalif@dapsas1.weizmann.ac.il
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The National Bioinformatics and Genome Resource Core at 
The Weizmann Institute of Science cordially invites you to
      participate in a demonstration and discussion of

  
**********************************************************

  *               The Genome Database (GDB)                
*
  *                 on the World Wide Web                  
*
  *                                                        
*
  *      An international collaboration in support of      
*
  *               the Human Genome Project                 
*
  *                                                        
*
  *      Hosted by Johns Hopkins University School of      
*
  *           Medicine, Baltimore, Maryland USA            
*
  *                                                        
*
  
**********************************************************

       that will be given by GDB developers and curators
     on June 26 between 9:00 - 12:00 at Ebner Auditorium
         The Weizmann Institute of Science, Rehovot.

The Genome Database (GDB) stores and curates genomic 
mapping data submitted by researchers worldwide and 
provides this information electronically to the scientific 
community. With the release of Version 6.0, GDB becomes 
the first database of its kind to allow online public 
curation and third party annotation.

An official National Node of the Genome Database World 
Wide Web Server is maintained at the Weizmann Institute of 
Science Bioinformatics Unit, thus enabling israeli users 
to locally interact with the database in a rapid and 
efficient way.

The open day will provide an opportunity for users of the 
Genome Database to directly ask GDB developers and 
curators about data submission and query.

The homepage location of the Genome Database on the World 
Wide Web is:
Israeli Node:     http://gdb.weizmann.ac.il/
Original Site:    http://gdbwww.gdb.org/

For more information regarding the open day please contact

 Dr Vered Chalifa-Caspi
 Email lhchalif@bioinformatics.weizamnn.ac.il

From owner-chromosomes@net.bio.net Wed Jun 19 23:00:00 1996
Path: biosci!CS.Arizona.EDU!news.Arizona.EDU!hamblin.math.byu.edu!sol.ctr.columbia.edu!news.mindlink.net!van-bc!unixg.ubc.ca!news.bc.net!arclight.uoregon.edu!usenet.eel.ufl.edu!warwick!lyra.csx.cam.ac.uk!news
From: jonathan konrad <"jk2"@mole.bio.cam. ac.uk>
Newsgroups: bionet.genome.chromosomes
Subject: anti-BrdU-FITC
Date: Thu, 20 Jun 1996 15:06:07 +0000
Organization: Genetics Department, Cambridge Univ., UK
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Does anyone use anti-BrdU-Fluorescein antibody and where do you get it 
from? The only people I can find are Boehringer and it is very 
expensive.

From owner-chromosomes@net.bio.net Wed Jun 19 23:00:00 1996
Path: biosci!bcm.tmc.edu!cs.utexas.edu!news.sprintlink.net!news-stk-200.sprintlink.net!news.sprintlink.net!new-news.sprintlink.net!EU.net!usenet2.news.uk.psi.net!uknet!usenet1.news.uk.psi.net!uknet!uknet!sunsite.doc.ic.ac.uk!sunews!suma3!abrdlher
From: Chromosome Terror <abrdlher@reading.ac.uk>
Newsgroups: bionet.genome.chromosomes
Subject: Re: layman questions
Date: Thu, 20 Jun 1996 19:35:11 +0100
Organization: University of Reading, U.K.
Lines: 12
Message-ID: <Pine.SOL.3.91.960620193345.28480M-100000@suma3.reading.ac.uk>
References: <4q3g32$62n@grissom.powerup.com.au> <4q3j71$21g@mercury.hgmp.mrc.ac.uk>
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In-Reply-To: <4q3j71$21g@mercury.hgmp.mrc.ac.uk> 

On 17 Jun 1996, Mr. P.F. Linehan wrote:

> >1.is a persons genetic blueprint in every cell of the body ??
> 
> As a general rule yes. Red blood cells are the obvious exception.
> They start out with nuclei but these are expelled as the rbc
> matures.

Another exception: sperm and egg cells. They have "shuffled" a bit the 
"blueprint".

Nach 

From owner-chromosomes@net.bio.net Thu Jun 20 23:00:00 1996
Path: biosci!bcm.tmc.edu!pendragon!news.msfc.nasa.gov!newsfeed.internetmci.com!newsxfer2.itd.umich.edu!netnews.worldnet.att.net!newsadm
From: Ervan Sisney <THE-ZYPHERS@worldnet.att.net>
Newsgroups: bionet.genome.chromosomes
Subject: Re: amniocentesis and hgp
Date: 21 Jun 1996 00:00:43 GMT
Organization: AT&T WorldNet Services
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JUNCAR@gnn.com (CAROLYN  GROSE) wrote:
>i am doing research on amniocentesis and the human genome project, 
>particularly the ethical questions raised by the hgp in the context 
>of abortion as a result of discovery of certain genes.  any ideas 
>on where to go for up to date, progressive information? thanks -- 
>june bogen.
>
  I am sorry but i can't help you.  If you get an answer I would also 
like to know.


From owner-chromosomes@net.bio.net Thu Jun 20 23:00:00 1996
Path: biosci!bcm.tmc.edu!pendragon!news.msfc.nasa.gov!elroy.jpl.nasa.gov!swrinde!newsfeed.internetmci.com!newsxfer2.itd.umich.edu!netnews.worldnet.att.net!newsadm
From: Ervan Sisney <THE-ZYPHERS@worldnet.att.net>
Newsgroups: bionet.genome.chromosomes
Subject: Re: balanced translocations and viable embryos
Date: 21 Jun 1996 00:10:59 GMT
Organization: AT&T WorldNet Services
Lines: 70
Message-ID: <4qcpaj$kcs@mtinsc01-mgt.ops.worldnet.att.net>
References: <4q20j9$gin@senator-bedfellow.MIT.EDU>
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X-Mailer: Mozilla 1.22ATT (Windows; U; 16bit)

colkin@athena.mit.edu (Catherine B Olkin) wrote:
>I also have a question about balanced translocations.
>In Feb 1996, I was about 20 weeks pregnant when I
>found out my baby would not live because she had
>too much genetic material.  Please excuse my simplistic
>terms -- I am an astronomer not a geneticist.  Tests
>of myself and my husband revealed that I have a
>balanced translocation of chromosomes 7 and 22.
>My daughter had too much chromosome #7.  My husband
>has no chromosome problems, neither do my parents,
>therefore the mutation occured in me.
>From the genetic councelor, I learned that it is
>unlikely that anyone else in the world would have
>the exact same translocation (since my parents
>don't have it).
>
>The probabilities of having a child with the chromosome
>structure my daughter had was quoted to me as
>1/10000 even given my translocation.  Also I learned
>that only 50% of my eggs would be viable.
>
>Now my husband and I have been trying to concieve 
>for a year and my doctor is recommending
>IUI (intrauterine insemination).  I was thinking
>maybe I should just have IVF since the zygote could
>be tested before implantation to be sure it is viable. 
>I know this is not an infertility newsgroup, but the 
>heart of the matter concerns the chances of having a viable baby
>given my translocation.
>
>If I am the only person with my translocation, then
>there seems to be a large uncertainty in any quoted
>probabilities because they would be derived from
>a distinctly different sample group.  So how could
>one know that all of my eggs will not be non-viable?
>

    






     I am not a geneticist (i plan to be one someday though), i dont 
think you can know if all of your eggs will not be non-viable.  There is 
always  the possibility that somtithing will happen. 







>One other bit of history: in the spring of 1994 I had
>a miscarriage which is now being attributed to my
>translocation.
>
>I would appreciate any opinions or suggestions.
>
>Thanks,
>Cathy
>
>PS.  I have never posted to a newsgroup before,
>I hope this works.  I have been reading this
>one for about 8 months though.
>
>



From owner-chromosomes@net.bio.net Thu Jun 20 23:00:00 1996
Path: biosci!rutgers!gatech!usenet.eel.ufl.edu!tank.news.pipex.net!pipex!oleane!jussieu.fr!univ-lyon1.fr!in2p3.fr!swidir.switch.ch!scsing.switch.ch!news.belwue.de!fu-berlin.de!shrew.rz-berlin.mpg.DE!not-for-mail
From: Simon Mercer <mercer@mpimg-berlin-dahlem.mpg.de>
Newsgroups: bionet.genome.chromosomes
Subject: Re: * transloc chrom help please
Date: Fri, 21 Jun 1996 16:55:07 +0200
Organization: Max-Planck-Institut fuer Molekulare Genetik
Lines: 52
Message-ID: <31CAB7CB.59E2@mpimg-berlin-dahlem.mpg.de>
References: <4pbtu5$sfc@newsbf02.news.aol.com> <4pi13t$791@dfw-ixnews7.ix.netcom.com> <4pjpgu$rqg@mercury.hgmp.mrc.ac.uk>
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X-Mailer: Mozilla 2.0 (X11; I; OSF1 V3.2 alpha)

Mr. P.F. Linehan wrote:
> 
> In article <4pi13t$791@dfw-ixnews7.ix.netcom.com> hk-miami@ix.netcom.com(HK) writes:
> .>In <4pbtu5$sfc@newsbf02.news.aol.com> kabass@aol.com (KABass) writes:
> .>>
> .>>I am writing on behalf of a frightened, pregnant friend of mine who's
> .>>fetus has a balanced translocated chromosome (breaks at 7 Q34 and 13
> .>Q12).
> .>> Her genetic counselor has not been much help.  Neither parent shows
> .>the
> .>>trait.
> .>>
> .>>She's found recorded evidence of abnormality with translocations at 7
> .>Q32
> .>>and & 7 Q36.  She's been told that even if a translocation identical
> .>to
> .>>hers had been found in a past study, the researcher would only have
> .>>published results if an abnormality had resulted.

I know I can't control what people write here, but as I have said
before:

We don't know any of the medical background to this case

We don't know who is asking, or why

They don't know the credentials of the people who answer their questions

-- for all of these reasons, please THINK before posting replies! if you
know something (or think you do: you don't know the case) then you may
be breaking medical confidentiality. If you are wrong then you may be
causing needless upset to someone, or at least giving them the wrong
idea. In any case, someone's real-life anxiety should not be made the
subject of speculation and debate.

In my opinion, this woman should be counselled by a qualified
professional; if she is not satisfied with the treatment she gets from
her current doctor or genetic counsellor, she can ask to be referred
elsewhere. There really is no alternative if she wants reliable
information.

If anyone disagrees with this posting, feel free to mail me directly.

Simon

(PS; my 'Dr' is 'Ph.D', not medical)

-- 
Dr. Simon Mercer                        
The Reference Library Database
+49 30 8413 1395 (fax)
mailto:mercer@mpimg-berlin-dahlem.mpg.de

From owner-chromosomes@net.bio.net Sat Jun 22 23:00:00 1996
Path: biosci!agate!cgl!itssrv1.ucsf.edu!not-for-mail
From: bgold@itsa.ucsf.edu (Bert Gold)
Newsgroups: bionet.genome.chromosomes
Subject: Re: * transloc chrom help please
Date: 23 Jun 1996 20:22:26 GMT
Organization: UCSF, ITS
Lines: 76
Message-ID: <4qk922$ibp@itssrv1.ucsf.edu>
References: <4pbtu5$sfc@newsbf02.news.aol.com> <4pi13t$791@dfw-ixnews7.ix.netcom.com> <4pjpgu$rqg@mercury.hgmp.mrc.ac.uk> <31CAB7CB.59E2@mpimg-berlin-dahlem.mpg.de>
NNTP-Posting-Host: itsa.ucsf.edu
X-Newsreader: TIN [UNIX 1.3 950726BETA PL0]

I support Dr. Mercer's comments below.



 Bert Gold, Ph.D.                         "Seeing much, Suffering much,
 University of California, San Francisco   and studying much,
 School of Medicine                        These are the three pillars
 Program in Medical Genetics               of learning." -- Benjamin Disraeli















Simon Mercer (mercer@mpimg-berlin-dahlem.mpg.de) wrote:
: Mr. P.F. Linehan wrote:
: > 
: > In article <4pi13t$791@dfw-ixnews7.ix.netcom.com> hk-miami@ix.netcom.com(HK) writes:
: > .>In <4pbtu5$sfc@newsbf02.news.aol.com> kabass@aol.com (KABass) writes:
: > .>>
: > .>>I am writing on behalf of a frightened, pregnant friend of mine who's
: > .>>fetus has a balanced translocated chromosome (breaks at 7 Q34 and 13
: > .>Q12).
: > .>> Her genetic counselor has not been much help.  Neither parent shows
: > .>the
: > .>>trait.
: > .>>
: > .>>She's found recorded evidence of abnormality with translocations at 7
: > .>Q32
: > .>>and & 7 Q36.  She's been told that even if a translocation identical
: > .>to
: > .>>hers had been found in a past study, the researcher would only have
: > .>>published results if an abnormality had resulted.
: 
: I know I can't control what people write here, but as I have said
: before:
: 
: We don't know any of the medical background to this case
: 
: We don't know who is asking, or why
: 
: They don't know the credentials of the people who answer their questions
: 
: -- for all of these reasons, please THINK before posting replies! if you
: know something (or think you do: you don't know the case) then you may
: be breaking medical confidentiality. If you are wrong then you may be
: causing needless upset to someone, or at least giving them the wrong
: idea. In any case, someone's real-life anxiety should not be made the
: subject of speculation and debate.
: 
: In my opinion, this woman should be counselled by a qualified
: professional; if she is not satisfied with the treatment she gets from
: her current doctor or genetic counsellor, she can ask to be referred
: elsewhere. There really is no alternative if she wants reliable
: information.
: 
: If anyone disagrees with this posting, feel free to mail me directly.
: 
: Simon
: 
: (PS; my 'Dr' is 'Ph.D', not medical)
: 
: -- 
: Dr. Simon Mercer                        
: The Reference Library Database
: +49 30 8413 1395 (fax)
: mailto:mercer@mpimg-berlin-dahlem.mpg.de

From owner-chromosomes@net.bio.net Mon Jun 24 23:00:00 1996
Path: biosci!daresbury!nntp-trd.UNINETT.no!oslonett.no!sn.no!Norway.EU.net!EU.net!enews.sgi.com!sgigate.sgi.com!news-res.gsl.net!news.gsl.net!ix.netcom.com!news
From: biopharm@ix.netcom.com(John Vail)
Newsgroups: bionet.genome.chromosomes
Subject: eye color and paternity
Date: 25 Jun 1996 04:59:35 GMT
Organization: Netcom
Lines: 5
Message-ID: <4qnrnn$bfv@dfw-ixnews6.ix.netcom.com>
NNTP-Posting-Host: ple-ca10-04.ix.netcom.com
X-NETCOM-Date: Mon Jun 24 11:59:35 PM CDT 1996

I have green eyes as does my mother. My father's eyes
were blue.  What are the chances of my daughter having
blue eyes? Someone suggested that this could not be
possible and obviously has me curious. Someone please 
comment. 

From owner-chromosomes@net.bio.net Mon Jun 24 23:00:00 1996
Path: biosci!daresbury!nntp-trd.UNINETT.no!oslonett.no!sn.no!Norway.EU.net!EU.net!enews.sgi.com!sgigate.sgi.com!nntp.coast.net!howland.reston.ans.net!news-e2a.gnn.com!newstf01.news.aol.com!newsbf02.news.aol.com!not-for-mail
From: rcjohnsen@aol.com (Rcjohnsen)
Newsgroups: bionet.genome.chromosomes
Subject: Re: eye color and paternity
Date: 25 Jun 1996 11:32:08 -0400
Organization: America Online, Inc. (1-800-827-6364)
Lines: 9
Sender: root@newsbf02.news.aol.com
Message-ID: <4qp0po$cpq@newsbf02.news.aol.com>
References: <4qnrnn$bfv@dfw-ixnews6.ix.netcom.com>
Reply-To: rcjohnsen@aol.com (Rcjohnsen)
NNTP-Posting-Host: newsbf02.mail.aol.com

It is indeed quite possible!  The inheritance of eye color as a simple
case of brown being dominant and blue, recessive is patently false.  Many
old genetics text books present it this way and unfortunately this is what
most people remember.  Inheritance of eye color is complex(many gene pairs
are involved) and your case is not far off the general rule--that blue
eyed and/or green eyed parents most often have blue or green eyed
children.  However, I have known cases where two blue eyed parents have
had brown eyed children where paternity was not a question.
Rcjohnsen@aol.com

From owner-chromosomes@net.bio.net Wed Jun 26 23:00:00 1996
Path: biosci!biosci!not-for-mail
From: jattwood@hgmp.mrc.ac.uk (Mr J. Attwood)
Newsgroups: bionet.genome.chromosomes
Subject: LAST CALL for chromosome 9 workshop
Date: 27 Jun 1996 08:22:11 -0700
Organization: UK HGMP Resource Centre
Lines: 28
Sender: daemon@net.bio.net
Distribution: world
Message-ID: <4qu8v3$9p2@net.bio.net>
NNTP-Posting-Host: net.bio.net


Dear Chromosome 9 enthusiasts,

Just to remind you the chromosome 9 workshop will take place at Eynsham
Hall near Oxford, U.K from 6th to 8th September 1996. The local
organiser is Dr Sue Povey (sue@galton.gene.ucl.ac.uk) and the US
co-ordinator Dr Margaret Pericak-Vance (chrom9@dnadoc.mc.duke.edu).
Participation is limited and if you wish to come you must send an
abstract for consideration by LAST WEEK or at least by the end of THIS
WEEK! (Please send by email as ASCII text file to
C9admin@galton.ucl.ac.uk if possible: otherwise fax or mail to Sue
Povey)

PLEASE LET US KNOW NOW, TODAY if you would like to come even if your
abstract is not quite ready! You may update the abstract at the meeting
but we need them asap to organise the funding.

For more details see chromosome 9 home page at
http://www.gene.ucl.ac.uk/chr9home.html
See you there!
Sue
******************************************************************
Dr Sue Povey MD                              tel +44 171 380 7410
MRC Human Biochemical Genetics Unit,          fax +44 171 387 3496
UCL, Wolfson House, 4 Stephenson Way, London NW1 2HE, UK




From owner-chromosomes@net.bio.net Wed Jun 26 23:00:00 1996
Path: biosci!rutgers!uwm.edu!cs.utexas.edu!swrinde!newsfeed.internetmci.com!monster.cibola.net!ocotillo.utep.edu!usenet
From: hsandova@mail.utep.edu
Newsgroups: bionet.genome.chromosomes
Subject: question
Date: Thu, 27 Jun 1996 10:39:31 -0700
Organization: A poorly-installed InterNetNews site
Lines: 3
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When lookinga at an optic microscope, we find a loop. How can we tell if 
it is an inverssion loop or a deletion loop?
Thnkyou for answering to hsandova@utep.edu Genetics

From owner-chromosomes@net.bio.net Thu Jun 27 23:00:00 1996
Path: biosci!galaxy.ucr.edu!ihnp4.ucsd.edu!munnari.OZ.AU!metro!metro!wabbit.its.uow.edu.au!news
From: Peter Gooding <pwg02@wumpus.itsuow.edu.au>
Newsgroups: bionet.genome.chromosomes
Subject: Re: eye color and paternity
Date: 28 Jun 1996 01:43:35 GMT
Organization: Uni Of Wollongong
Lines: 13
Message-ID: <4qvdc7$3j4@wabbit.its.uow.edu.au>
References: <4qnrnn$bfv@dfw-ixnews6.ix.netcom.com>
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To: biopharm@ix.netcom.com
X-URL: news:4qnrnn$bfv@dfw-ixnews6.ix.netcom.com

biopharm@ix.netcom.com(John Vail) wrote:
>I have green eyes as does my mother. My father's eyes
>were blue.  What are the chances of my daughter having
>blue eyes? Someone suggested that this could not be
>possible and obviously has me curious. Someone please 
>comment. 

To calculate the chances for a particular daughter, you need some 
information about eye colour of your daughter's mother. 

Peter Gooding



From owner-chromosomes@net.bio.net Thu Jun 27 23:00:00 1996
Path: biosci!galaxy.ucr.edu!ihnp4.ucsd.edu!munnari.OZ.AU!metro!metro!wabbit.its.uow.edu.au!news
From: Peter Gooding <pwg02@wumpus.itsuow.edu.au>
Newsgroups: bionet.genome.chromosomes
Subject: Re: eye color and paternity
Date: 28 Jun 1996 01:43:50 GMT
Organization: Uni Of Wollongong
Lines: 13
Message-ID: <4qvdcm$482@wabbit.its.uow.edu.au>
References: <4qnrnn$bfv@dfw-ixnews6.ix.netcom.com>
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To: biopharm@ix.netcom.com
X-URL: news:4qnrnn$bfv@dfw-ixnews6.ix.netcom.com

biopharm@ix.netcom.com(John Vail) wrote:
>I have green eyes as does my mother. My father's eyes
>were blue.  What are the chances of my daughter having
>blue eyes? Someone suggested that this could not be
>possible and obviously has me curious. Someone please 
>comment. 

To calculate the chances for a particular daughter, you need some 
information about eye colour of your daughter's mother. 

Peter Gooding



From owner-chromosomes@net.bio.net Thu Jun 27 23:00:00 1996
Path: biosci!daresbury!lyra.csx.cam.ac.uk!news
From: Ricky Critcher <"rc"@mole.bio.cam. ac.uk>
Newsgroups: bionet.genome.chromosomes
Subject: re: anti digoxigennin
Date: Fri, 28 Jun 1996 12:55:22 +0000
Organization: Genetics Department, Cambridge Univ., UK
Lines: 11
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Hi

Does anybody know who supplies anti-dig antibody conjugated with horse 
radish peroxidase.

Thanks in advance

Ricky Critcher
Dept. of Genetics
Cambridge University
UK

From owner-chromosomes@net.bio.net Thu Jun 27 23:00:00 1996
Path: biosci!RSGIS4.TAMU.EDU!jvb
From: jvb@RSGIS4.TAMU.EDU (Dr Van Buijtenen)
Newsgroups: bionet.genome.chromosomes
Subject: Re: * transloc chrom help please
Date: 28 Jun 1996 07:58:52 -0700
Organization: BIOSCI International Newsgroups for Molecular Biology
Lines: 65
Sender: daemon@net.bio.net
Distribution: world
Message-ID: <Pine.SUN.3.91.960628095148.26048B-100000@rsgis4.tamu.edu>
References: <31CAB7CB.59E2@mpimg-berlin-dahlem.mpg.de>
NNTP-Posting-Host: net.bio.net



On Fri, 21 Jun 1996, Simon Mercer wrote:

> Mr. P.F. Linehan wrote:
> > 
> > In article <4pi13t$791@dfw-ixnews7.ix.netcom.com> hk-miami@ix.netcom.com(HK) writes:
> > .>In <4pbtu5$sfc@newsbf02.news.aol.com> kabass@aol.com (KABass) writes:
> > .>>
> > .>>I am writing on behalf of a frightened, pregnant friend of mine who's
> > .>>fetus has a balanced translocated chromosome (breaks at 7 Q34 and 13
> > .>Q12).
> > .>> Her genetic counselor has not been much help.  Neither parent shows
> > .>the
> > .>>trait.
> > .>>
> > .>>She's found recorded evidence of abnormality with translocations at 7
> > .>Q32
> > .>>and & 7 Q36.  She's been told that even if a translocation identical
> > .>to
> > .>>hers had been found in a past study, the researcher would only have
> > .>>published results if an abnormality had resulted.
> 
> I know I can't control what people write here, but as I have said
> before:
> 
> We don't know any of the medical background to this case
> 
> We don't know who is asking, or why
> 
> They don't know the credentials of the people who answer their questions
> 
> -- for all of these reasons, please THINK before posting replies! if you
> know something (or think you do: you don't know the case) then you may
> be breaking medical confidentiality. If you are wrong then you may be
> causing needless upset to someone, or at least giving them the wrong
> idea. In any case, someone's real-life anxiety should not be made the
> subject of speculation and debate.
> 
> In my opinion, this woman should be counselled by a qualified
> professional; if she is not satisfied with the treatment she gets from
> her current doctor or genetic counsellor, she can ask to be referred
> elsewhere. There really is no alternative if she wants reliable
> information.
> 
> If anyone disagrees with this posting, feel free to mail me directly.
> 
> Simon
> 
> (PS; my 'Dr' is 'Ph.D', not medical)
> 
> -- 
> Dr. Simon Mercer                        
> The Reference Library Database
> +49 30 8413 1395 (fax)
> mailto:mercer@mpimg-berlin-dahlem.mpg.de
> 
> 
	I have mixed feelings about Mercer's comments. His points are 
well taken and should be considered before replying to medical questions. 
On the other hand if one posts a question on the internet it is a given 
that some replies will be useless, some will be wrong, and a few will be 
real gems, the source of which is unpredictable. On balance I think one 
should be responsible, but not timid in answering questions. 
J.P. van Buijtenen

From owner-chromosomes@net.bio.net Sat Jun 29 23:00:00 1996
Path: biosci!galaxy.ucr.edu!ihnp4.ucsd.edu!munnari.OZ.AU!news.ecn.uoknor.edu!qns3.qns.net!imci4!newsfeed.internetmci.com!howland.reston.ans.net!news-e2a.gnn.com!newstf01.news.aol.com!newsbf02.news.aol.com!not-for-mail
From: rcjohnsen@aol.com (Rcjohnsen)
Newsgroups: bionet.genome.chromosomes
Subject: Re: question
Date: 29 Jun 1996 11:56:34 -0400
Organization: America Online, Inc. (1-800-827-6364)
Lines: 3
Sender: root@newsbf02.news.aol.com
Message-ID: <4r3jni$sc0@newsbf02.news.aol.com>
References: <31D2C753.1628@mail.utep.edu>
Reply-To: rcjohnsen@aol.com (Rcjohnsen)
NNTP-Posting-Host: newsbf02.mail.aol.com

It would help immensely to know what kind of cell you are looking at.

rcjohnsen@aol.com

From owner-chromosomes@net.bio.net Sat Jun 29 23:00:00 1996
Path: biosci!galaxy.ucr.edu!ihnp4.ucsd.edu!munnari.OZ.AU!news.ecn.uoknor.edu!qns3.qns.net!imci4!newsfeed.internetmci.com!howland.reston.ans.net!news-e2a.gnn.com!newstf01.news.aol.com!newsbf02.news.aol.com!not-for-mail
From: rcjohnsen@aol.com (Rcjohnsen)
Newsgroups: bionet.genome.chromosomes
Subject: Re: eye color and paternity
Date: 29 Jun 1996 12:13:47 -0400
Organization: America Online, Inc. (1-800-827-6364)
Lines: 9
Sender: root@newsbf02.news.aol.com
Message-ID: <4r3knr$srg@newsbf02.news.aol.com>
References: <Pine.SOL.3.91.960629152407.9445C-100000@suma3.reading.ac.uk>
Reply-To: rcjohnsen@aol.com (Rcjohnsen)
NNTP-Posting-Host: newsbf02.mail.aol.com

Dear Nach

It ultimately depends on her mate/spouse/lover/ and his genetic makeup. 
If he has blue eyes the probability of a blue eyed child is very high.  If
her mate has brown eyes, then the probability of a blue eyed child
decreases and the probability of a brown eyed child increases.  Eye color
should not be a test for paternity.  There are far better-more accurate
tests available for that.
Rcjohnsen@aol.com

From owner-chromosomes@net.bio.net Sat Jun 29 23:00:00 1996
Path: biosci!daresbury!is.bbsrc.ac.uk!news.ox.ac.uk!lyra.csx.cam.ac.uk!sunsite.doc.ic.ac.uk!sunews!suma3!abrdlher
From: Chromosome Terror <abrdlher@reading.ac.uk>
Newsgroups: bionet.genome.chromosomes
Subject: Re: eye color and paternity
Date: Sat, 29 Jun 1996 15:27:49 +0100
Organization: University of Reading, U.K.
Lines: 23
Message-ID: <Pine.SOL.3.91.960629152407.9445C-100000@suma3.reading.ac.uk>
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In-Reply-To: <4qp0po$cpq@newsbf02.news.aol.com> 

On 25 Jun 1996, Rcjohnsen wrote:

> It is indeed quite possible!  The inheritance of eye color as a simple
> case of brown being dominant and blue, recessive is patently false.  Many
> old genetics text books present it this way and unfortunately this is what
> most people remember.  Inheritance of eye color is complex(many gene pairs
> are involved) and your case is not far off the general rule--that blue
> eyed and/or green eyed parents most often have blue or green eyed
> children.  However, I have known cases where two blue eyed parents have
> had brown eyed children where paternity was not a question.
> Rcjohnsen@aol.com

I agree with you. However, Alec Jeffreys (of DNA fingerprinting in humans 
fame) came to the Cambridge Science Park in 1993 to give a talk. He 
started by looking at the audience and saying something like "I suppose 
most of you will be surprised if I told you that 10% of the audience do 
not have the father that they think they have..." ;-)

No, seriously. I don't think you can question paternity simply looking at 
the eye colour.

Nach.


From owner-chromosomes@net.bio.net Sat Jun 29 23:00:00 1996
Path: biosci!daresbury!bioftp.unibas.ch!infobiogen.fr!jussieu.fr!oleane!in2p3.fr!swidir.switch.ch!nntp.coast.net!howland.reston.ans.net!newsfeed.internetmci.com!uwm.edu!news.cse.psu.edu!news.cc.swarthmore.edu!netnews.upenn.edu!jake.esu.edu!news
From: Dorrel Rhodes <guest8@cs.millersv.edu>
Newsgroups: bionet.genome.chromosomes
Subject: Re: eye color and paternity
Date: 29 Jun 1996 20:05:51 GMT
Organization: university
Lines: 4
Message-ID: <4r42av$kll@jake.esu.edu>
References: <4qnrnn$bfv@dfw-ixnews6.ix.netcom.com>
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why is this so important to you right now. the important thing should be 
the love and care that you will give to this child, and nothing more



From owner-chromosomes@net.bio.net Sat Jun 29 23:00:00 1996
Path: biosci!SCREAMS.GDB.ORG!avoltz
From: avoltz@SCREAMS.GDB.ORG (Amy Voltz)
Newsgroups: bionet.genome.chromosomes
Subject: Dup. & Del. of chroma. 2 & 12
Date: 30 Jun 1996 14:58:21 -0700
Organization: BIOSCI International Newsgroups for Molecular Biology
Lines: 22
Sender: daemon@net.bio.net
Distribution: world
Message-ID: <Pine.SOL.3.91.960630175345.14885B-100000@screams.gdb.org>
NNTP-Posting-Host: net.bio.net

Please respond directly to Mr. Bonomo at mbonomo@generation.net
Thanks for any help!
---------- Forwarded message ----------
Date: Thu, 20 Jun 1996 17:01:01 -0500
From: Mike Bonomo <mbonomo@generation.net>
To: findgene@gdb.org
Subject: Dup. & Del. of chroma. 2 & 12

My son has a duplication & deletion of chromasones 2 & 12.

We are trying to find other instances of children with this problem or 
at least get more info. 

I am trying to do this using th internet, but I am not sure how to go 
about looking for this information.

Any sugestions?

Thanks
Mike Bonomo



From owner-chromosomes@net.bio.net Sun Jun 30 23:00:00 1996
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From: Simon Mercer <mercer@mpimg-berlin-dahlem.mpg.de>
Newsgroups: bionet.genome.chromosomes
Subject: Re: * transloc chrom help please
Date: Mon, 01 Jul 1996 10:02:02 +0200
Organization: Max-Planck-Institut fuer Molekulare Genetik
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Dr Van Buijtenen wrote:

> .>In <4pbtu5$sfc@newsbf02.news.aol.com> kabass@aol.com (KABass) writes:
> .>>
> .>>I am writing on behalf of a frightened, pregnant friend of mine
> [rest of message deleted]
>         I have mixed feelings about Mercer's comments. His points are
> well taken and should be considered before replying to medical questions.
> On the other hand if one posts a question on the internet it is a given
> that some replies will be useless, some will be wrong, and a few will be
> real gems, the source of which is unpredictable. On balance I think one
> should be responsible, but not timid in answering questions.
> J.P. van Buijtenen

I believe that the net should not be censored, which implies that anyone
can post whatever they like in reply to this type of question- I only
wish that everyone who wrote in had the experience to know how to
interpret what they read. In the first place answers are often technical
and likely to be misinterpreted, in the second place many readers do not
know what quality of information to expect in replies because they are
not familiar with the internet. I know that there are people who write
directly to the posters of this type of question with the address of
their closest genetics counsellor, which is a good idea.

What I would suggest is that if anyone wants to give advice to people
looking for information on cases of chromosome abnormality via this
newsgroup, they should always advise that the person affected should
seek a professional medical opinion from a doctor or counsellor who
knows the full details of the case, and if in doubt get a second
opinion. In some cases I have replied and suggested some questions which
they should be sure to ask their doctor, which might help them clarify
the situation. Very often I see messages whose senders clearly do not
appreciate the impact of what they write, cases like "oh yeah, so that
means he can't be the father", or "in cases like this the baby won't be
normal". If someone acts on this advice, I wonder what the legal
implications are for the advisor?

The reason we have genetics counsellors is because giving the layman a
clear and unbiassed view of the truth is _hard_. We as a 'net community'
must show some responsibility.

These are just my personal opinions, and I would like to point out that
I am a Ph.D and not a medical doctor and have no authority to impose
standards on any community. I have worked around the fringes of the
genetic and cytogenetic communities for several years but I am not
professionally qualified to give medical advice.

Simon

-- 
Dr. Simon Mercer                        
The Reference Library Database
+49 30 8413 1395 (fax)
mailto:mercer@mpimg-berlin-dahlem.mpg.de

