From owner-molec-model@net.bio.net Fri Jan 01 22:00:00 1999
Path: biosci!rutgers!rockyd.rockefeller.edu!newsfeed.nyu.edu!newsfeed.direct.ca!remarQ73!supernews.com!remarQ69!not-for-mail
From: "Smokehouse" <thekgb@tca.net>
Newsgroups: alt.sex.wanted.models,alt.sf.scale-models,alt.supermodels,alt.supermodels.cindy-crawford,alt.tv.models-inc,asu.research.modelling,aus.rail.models,bionet.molec-model,de.rec.modelle.bahn,de.rec.modelle.misc,fj.rec.models
Subject: Re: HELP! Who is this model?
Date: Fri, 1 Jan 1999 19:31:37 -0600
Organization: Posted via RemarQ, http://www.remarQ.com - Discussions start here!
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ME!!




Seeker wrote in message <76594t$h6c$1@news.kolumbus.fi>...
>Anybody knows the name of this model
>
>(unforgettable77@(dontwritethis)yahoo.com)
>
>
>
>
>



From owner-molec-model@net.bio.net Sat Jan 02 22:00:00 1999
Path: biosci!rutgers!rockyd.rockefeller.edu!news-nysernet-5.sprintlink.net!news-in-east1.sprintlink.net!news.sprintlink.net!newsfeed00.btx.dtag.de!newsfeed01.btx.dtag.de!news.fh-hannover.de!news-han1.dfn.de!news-koe1.dfn.de!RRZ.Uni-Koeln.DE!usenet
From: "Martin Grotegut" <MGrotegut1@poboxes.com>
Newsgroups: alt.sex.wanted.models,alt.sf.scale-models,alt.supermodels,alt.supermodels.cindy-crawford,alt.tv.models-inc,asu.research.modelling,aus.rail.models,bionet.molec-model,de.rec.modelle.bahn,de.rec.modelle.misc,fj.rec.models
Subject: Re: HELP! Who is this model?
Date: Thu, 31 Dec 1998 18:05:21 +0100
Organization: Regional Computing Center, University of Cologne
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Could be Markus Schenkenberg from Sweden.

Yours,

Martin

Seeker <ask@and.itell.com> wrote in message 76594t$h6c$1@news.kolumbus.fi...
>Anybody knows the name of this model
>
>(unforgettable77@(dontwritethis)yahoo.com)
>
>
>
>
>



From owner-molec-model@net.bio.net Sat Jan 02 22:00:00 1999
Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newsfeed.cwix.com!195.252.142.12!newsfeed.tli.de!news-fra.pop.de!informatik.uni-bremen.de!iradj.is-bremen.de!newsfeed.dpn.de!news-out1.du.gtn.com!news-in3.du.gtn.com!gtnduss1.du.gtn.com!not-for-mail
From: Joachim Schmid <joachim.schmid@online-club.de>
Newsgroups: alt.sex.wanted.models,alt.sf.scale-models,alt.supermodels,alt.supermodels.cindy-crawford,alt.tv.models-inc,asu.research.modelling,aus.rail.models,bionet.molec-model,de.rec.modelle.bahn,de.rec.modelle.misc,fj.rec.models
Subject: Re: HELP! Who is this model?
Date: Sun, 03 Jan 1999 14:34:21 +0100
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Seeker schrieb:
> 
> Anybody knows the name of this model

OT des Jahres. Anonym gepostet. Und noch ein Binary angehängt. Wo
blieben die hämischen Proteststürme, mit denen manche Leute hier so gern
über arglose Neulinge herfallen??

Joachim

From owner-molec-model@net.bio.net Fri Jan 08 22:00:00 1999
Path: biosci!newshost.lanl.gov!awabi.library.ucla.edu!208.134.241.18!newsfeed.cwix.com!194.72.7.126!btnet-peer!btnet!rill.news.pipex.net!pipex!oleane!jussieu.fr!moka.ccr.jussieu.fr!not-for-mail
From: ptitjean@ccr.jussieu.fr (Michel PETITJEAN)
Newsgroups: bionet.molec-model
Subject: 3D motif
Date: 8 Jan 1999 11:41:08 +0100
Organization: CCR - Universites Paris VI/VII - Paris - France
Lines: 12
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Subj.: 3D motif
I have written a spatial alignment programme which reads the cartesian
coordinates of two molecules and outputs the maximal common 3D-motif.
(algorithm described in: Comput.Chem.1998,22[6],pp.463-465).
The computing time is roughly proportional to the product n1*n2 of the
number of atoms of the two molecules.
Free copies are loadable by ftp on various computers, including
DEC-alpha (VMS and unix), IBM RS6000 serie (and SP2), CRAY Y and J90,
SGI O2 (and any mips1 to mips4 SGI).

Michel Petitjean,                     Email: petitjean@itodys.jussieu.fr
ITODYS (CNRS, ESA 7086)                      ptitjean@ccr.jussieu.fr

From owner-molec-model@net.bio.net Sun Jan 10 22:00:00 1999
Path: biosci!agate!newsfeed.berkeley.edu!btnet-peer!btnet!news-lond.gip.net!news-raspail.gip.net!news.gsl.net!gip.net!oleane!jussieu.fr!univ-lyon1.fr!univ-aix.fr!not-for-mail
From: Eric Blanc <eric@afmb.cnrs-mrs.fr>
Newsgroups: bionet.molec-model
Subject: Re: 3D motif
Date: Mon, 11 Jan 1999 08:47:58 +0100
Organization: Universite de la Mediterranee Aix en Provence
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To: Michel PETITJEAN <ptitjean@ccr.jussieu.fr>
X-Mailer: Mozilla 3.01Gold (X11; I; IRIX 5.3 IP22)

Michel PETITJEAN wrote:
> 
> Subj.: 3D motif
> I have written a spatial alignment programme which reads the cartesian
> coordinates of two molecules and outputs the maximal common 3D-motif.
> (algorithm described in: Comput.Chem.1998,22[6],pp.463-465).
> The computing time is roughly proportional to the product n1*n2 of the
> number of atoms of the two molecules.

Fine, that's quite interesting.
What's the FTP address ???

Thnaks in advance.

Eric.
-- 
_________________________________________________________________
Eric Blanc
	    NMR Group Postdoc., Webmaster for AFMB
WWW:   http://afmb.cnrs-mrs.fr/~eric/    AFMB CNRS-UPR 9039
Email: eric@afmb.cnrs-mrs.fr              31 Ch J. Aiguier
Fax: 33-4-91-16-45-36                     13402 Marseille CEDEX 20
Phone: 33-4-91-16-45-29                  FRANCE

From owner-molec-model@net.bio.net Wed Jan 13 22:00:00 1999
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From: "Paul Chen" <bpchen@usa.net>
Newsgroups: bionet.molec-model
Subject: test post
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test

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<DIV><FONT color=3D#000000 size=3D2>test</FONT></DIV></BODY></HTML>

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From owner-molec-model@net.bio.net Fri Jan 15 22:00:00 1999
Path: biosci!MARKETONE.COM!tech
From: tech@MARKETONE.COM
Newsgroups: bionet.molec-model
Subject: FREE! Software Download! Upload your Website to Over 700+ Search Engines & Links! Growing Monthly!
Date: 15 Jan 1999 21:10:04 -0800
Organization: BIOSCI International Newsgroups for Molecular Biology
Lines: 76
Sender: daemon@net.bio.net
Distribution: world
Message-ID: <199901160509.VAA07045@net.bio.net>
Reply-To: mail@market1.com
NNTP-Posting-Host: net.bio.net

Dear molmodel


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                                    Also an HTML version of your uploads.


                       Thank you in advance for your time and consideration.

                                       __________________________________

































From owner-molec-model@net.bio.net Sun Jan 17 22:00:00 1999
Path: biosci!WEBTV.NET!drdestucto
From: drdestucto@WEBTV.NET (ryan m)
Newsgroups: bionet.molec-model
Subject: sluty^hookers
Date: 18 Jan 1999 11:53:56 -0800
Organization: BIOSCI International Newsgroups for Molecular Biology
Lines: 3
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Distribution: world
Message-ID: <10905-36A3904F-3011@mailtod-241.iap.bryant.webtv.net>
NNTP-Posting-Host: net.bio.net

I  will  pay  you   1 million  dollars  to  send   me
sexy   photos   of   your  naked   bodys$$$ $$$$$$$$$$$$$$$$$$$$$$$$$$$$


From owner-molec-model@net.bio.net Sun Jan 17 22:00:00 1999
Path: biosci!WEBTV.NET!drdestucto
From: drdestucto@WEBTV.NET (ryan m)
Newsgroups: bionet.molec-model
Subject: hollywoodteenhookers
Date: 18 Jan 1999 11:56:21 -0800
Organization: BIOSCI International Newsgroups for Molecular Biology
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send   sexy   photos    of   your     naked    bodys.I  will   send
you   2  million   dollars  for  the  photos.


From owner-molec-model@net.bio.net Sun Jan 17 22:00:00 1999
Path: biosci!news.stanford.edu!newsfeed.berkeley.edu!news-feed.inet.tele.dk!bofh.vszbr.cz!news-lond.gip.net!btnet-peer!btnet!server2.netnews.ja.net!news.reading.ac.uk!suma3!ssr97lrc
From: "l.r.cooper" <ssr97lrc@reading.ac.uk>
Newsgroups: bionet.molec-model
Subject: modified amino acids
Date: Mon, 18 Jan 1999 21:12:51 +0000
Organization: University of Reading
Lines: 21
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dear all,

i'm looking for a database, though a table would suffice, of modified
amino acid structures. any suggestions?

will summarise


Ad Astra Per Aspera

=======================================================
\Mr. Lee R. Cooper Bsc(Hons) MSc, Parallel, Emergent\\\\
\\& Distributed Architechture Laboratory, Dept. of\\\\\\\
\\\Computer Science, University of Reading, Whiteknights\\
\\\\PoBox 225, Reading, Berkshire. RG6 6AY (UK)\\\\\\\\\\\\
\\\\\Tel +44 (0)118 987 5123 x7645 (0915-1700)Fax\\\\\\\\\\\
\\\\\\Tel +44 (0)118 931 8188 x7817 (1900-2300)0118 975 1994\
\\\\\\\http://www.pedal.cs.rdg.ac.uk/~ssr97lrc/  \\\\\\\\\\\\\
===============================================================


From owner-molec-model@net.bio.net Mon Jan 18 22:00:00 1999
Path: biosci!agate!newsfeed.berkeley.edu!news-peer1.sprintlink.net!news-in-east1.sprintlink.net!news.sprintlink.net!news2.i-2000.com!not-for-mail
From: VRex Info <info@vrex.com>
Newsgroups: bionet.molec-model
Subject: Projecting molecular models in stereoscopic 3D
Date: Tue, 19 Jan 1999 10:56:31 +0000
Organization: VRex, Inc.
Lines: 45
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There is a new way to view HyperChem molecular models in
stereoscopic 3D on SGI workstations.  HyperChem is an integrated and
flexible molecular modeling product for chemists. It is a powerful
package with capabilities for visualizing, analyzing and simulating
molecules, and for communicating information about molecular
structures.

VRex, Inc. has a new plug-and-play 3D stereoscopic projection
system, the VR-2210 that works very well with SGI workstations
running HyperChem. The projector makes it possible for groups of
people to view HyperChem models easily and comfortably in flicker-
free stereoscopic 3D.

Displaying images in stereoscopic 3D makes it easier to see details
that are lost in ordinary 2D displays.  Stereoscopic 3D enhances "3D
rendering" by adding depth information to the perspective view.  The
result is an image that not only has 3D perspective but that also
appears to float in space inside and in front of the screen.
Stereoscopic 3D makes crystal clear which atoms are in front and
which are behind in any molecular model.

The projector is portable and uses passive polarized glasses.  It
works well for audiences of up to 200 people and can be used in
classrooms, labs, and conference settings or for any other type of
technical presentation.

For users of HyperChem 4.5 the procedure to enable stereo viewing is
simple and involves clicking the Hardware stereo check box in the
Stereo Options dialog under the Display|Rendering menu.

VRex's website is http://www.vrex.com and the phone number is (914)
345-8877.  An application note that explains how to use the VR-2210
with HyperChem 4.5 for the SGI is available at
http://www.vrex.com/apps/html/hyperchem_4.5.html.  Specific
informaiton on the projector is at http://www.vrex.com/html/vr-
2210.htm.  Also visit http://www.vrex.com/apps/ for other supported
applications.

If you use an application other than HyperChem 4.5 that supports
stereo, please let us know.  We will be glad to help you determine
if your application works with our projection system.




From owner-molec-model@net.bio.net Tue Jan 19 22:00:00 1999
Path: biosci!news.stanford.edu!newsfeed.berkeley.edu!news.maxwell.syr.edu!rill.news.pipex.net!pipex!oleane!jussieu.fr!moka.ccr.jussieu.fr!not-for-mail
From: ptitjean@ccr.jussieu.fr (Michel PETITJEAN)
Newsgroups: bionet.molec-model
Subject: surfaces and volumes
Date: 20 Jan 1999 15:22:03 +0100
Organization: CCR - Universites Paris VI/VII - Paris - France
Lines: 14
Message-ID: <784oqb$4vpu@moka.ccr.jussieu.fr>
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Subject: surfaces and volumes

The programme for calculation of van der Waals surfaces and volumes
(J.Comput.Chem.1994,15[5],507-523) is available as a binary file
on various computers: IBM RS6000 serie (and SP2), CRAY Y and J90,
DEC-alpha (VMS and unix), SGI O2 (and some others).
It performs both analytical and Monte-Carlo calculations.
Free copies will be sent to interested people.
( and the Monte-Carlo fortran subroutines too).
Do not forget to tell me on what computer you wish to get it.

Michel Petitjean,                     Email: petitjean@itodys.jussieu.fr
ITODYS (CNRS, ESA 7086)                      ptitjean@ccr.jussieu.fr

From owner-molec-model@net.bio.net Tue Jan 26 22:00:00 1999
Path: biosci!internet!biosci!not-for-mail
From: biohelp (BIOSCI Administrator)
Newsgroups: bionet.molec-model
Subject: BIOSCI/bionet miniFAQ & Fundraiser
Date: 27 Jan 1999 02:00:17 -0800
Organization: BIOSCI International Newsgroups for Molecular Biology
Lines: 233
Sender: daemon@net.bio.net
Distribution: world
Message-ID: <199901271000.CAA13874@net.bio.net>
NNTP-Posting-Host: net.bio.net

(LAST REVISION: 30-JUL-95)

This BIOSCI "miniFAQ" is designed to answer the questions that come up
the *most frequently*.  The main BIOSCI FAQ (Frequently Asked
Questions) is accessible on the World Wide Web at URL
http://www.bio.net/.

If you can not find an answer to your question in this or other
documentation, the BIOSCI technical support staff answers e-mail
queries sent to

		       biosci-help@net.bio.net

We can only answer questions about the use of the newsgroups and
mailing lists.  We unfortunately do not have the staff to do Internet
information searches or answer scientific questions.  Please post
those to the appropriate BIOSCI/bionet newsgroups.


	Contents:
	--------
	0) BIOSCI NEEDS YOUR SUPPORT!!

	1) Using the WWW to access the BIOSCI/bionet newsgroups.

	2) What to do about "spams," i.e., junk mail, ads, etc.

	3) Examples of subscribing and unsubscribing to the mailing lists.

	4) The BIOSCI user address and research interest directory.


0) BIOSCI NEEDS YOUR SUPPORT!!
------------------------------
BIOSCI's government funding has been expended, and we are now
operating solely from advertising revenue that we have raised from our
Web site at http://www.bio.net/.  We need just a few minutes of your
time to help us serve you.

You can do two important things which will take very little time for
you individually and will immensely help us continue to help you.

First, please use our WWW system at http://www.bio.net/ to access the
archives.  You can post or reply to messages via your Web browser as
described in item #1 below.  Your usage helps attract sponsors. If you
contact any of our sponsors, please be sure to thank them for
supporting BIOSCI. It is critical for them to get this feedback if
they are to continue their sponsorship for the long term.

Second, if you work for a company or organization that provides
products or services of interest to the biology community, please pass
this message on to your marketing or marketing communications
department or other appropriate group.  Please ask them to help
support BIOSCI by sponsoring our Web site and explain the uses and
benefits of the system to the biology community. If they are
interested, they can then contact us for further information at our
tech support address, biosci-help@net.bio.net.


1) Using the WWW to access the BIOSCI/bionet newsgroups.
--------------------------------------------------------
As of 10 December 1995, all BIOSCI/bionet full newsgroups are
accessible through the World Wide Web (WWW) at URL http://www.bio.net.
One can read and reply publicly or privately to both recent postings
and archived messages through one's Web browser if it is configured
properly to send e-mail.  Each newsgroup is equipped with its own WAIS
index.  The main BIOSCI home page also has access to the BIO-JOURNALS
Table of Contents database WAIS index and the BIOSCI user address
database described in another item further below.


2) What to do about "spams," i.e., junk mail, ads, etc.
-------------------------------------------------------
BIOSCI is a set of parallel USENET newsgroups (the "bionet" groups),
mailing lists, and a hypermail archive at URL http://www.bio.net/.
The same postings are distributed on all media (except for a small
number of mailing-list-only groups at net.bio.net).  Unfortunately it
is becoming a despicable practice on the Internet (by a few people out
to make a fast buck) to do automated mass postings to thousands of
newsgroups and mailing lists.  These attempts to grab free advertising
are refered to as "spams" in the usual, somewhat boneheaded, net
terminology.  USENET is more susceptible to this practice, and many
spams originate on the USENET groups and then are passed on to the
mailing lists.  However, spammers also get lists of mailing addresses
and hit these too, so neither medium is immune.

What should you do personally if you get junk mail?
---------------------------------------------------
Just delete it and move on without reading it further.  Filing a
protest is becoming increasingly useless because spammers are often
disguising the addresses where the messages are sent from.  Unless you
really understand Internet mail systems, your attempt at protest by
sending replies to the message will often end up being sent to the
address of an innocent person that the spammer is victimizing.

What can BIOSCI/bionet do to protect its newsgroups?
----------------------------------------------------
The only solution currently available is to moderate the newsgroup.
If this newsgroup is already moderated, then you are in good shape.
Moderation protects the USENET distribution from about 95% of the
spams that are being sent to date and protects the mailing lists
completely.  Moderation means, however, that someone has to take the
time to review each message before it goes out.  We have set up
software here that simply allows the moderator to forward to an
address at net.bio.net messages that (s)he wishes to have distributed.
This takes no more time than that needed to read the message and pass
it on, say about 1 min. per message.

Most newsgroups currently have a discussion leader who is responsible
for their newsgroup.  The discussions leaders and their e-mail
addresses are listed in the BIOSCI Information Sheet which is
available on the Web at http://www.bio.net/.  If a newsgroup is being
hit with too many junk postings, please contact the discussion leader
for that group and see if there is interest in moderating the group.
Please do not assume that by simply posting a complaint to the
newsgroup itself, anyone on the BIOSCI staff will act on your
complaint.  With close to 100 newsgroups to run, the BIOSCI staff has
to rely on the discussion leaders of each newsgroup to report problems
directly to us at biosci-help@net.bio.net.

We will moderate any of our newsgroups if the discussion leader tells
us that the readership of the group wishes to do so and if a moderator
is willing to do the work.  For most BIOSCI/bionet groups, this
entails only a few minutes of work each day.

Moderating a newsgroup will resolve probably 95% of the junk postings
on the USENET distribution.  Unfortunately there are easy ways for
determined spammers to override the moderation mechanism on USENET,
but we can protect our e-mail subscribers from unwanted postings if
the newsgroup is moderated.  You can also access our newsgroups over
the WWW at URL http://www.bio.net.  While this Web interface will not
stop spammers from trying to post to the groups, this will give you
yet another way, besides using USENET news, to keep the junk out of
your personal mail files.  For those of you with local USENET news
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From owner-molec-model@net.bio.net Fri Jan 29 22:00:00 1999
Path: biosci!news.stanford.edu!su-news-feed2.bbnplanet.com!su-news-hub1.bbnplanet.com!news.gtei.net!newsfeed.wli.net!portc04.blue.aol.com!audrey03.news.aol.com!not-for-mail
From: jnc1998@aol.com (JNC1998)
Newsgroups: bionet.molec-model
Subject: prions
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Date: 30 Jan 1999 14:57:42 GMT
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Message-ID: <19990130095742.07820.00001408@ng-fr1.aol.com>

what is your take on vitamin supplements containing freeze dried glandulars
such as adrenal, ovary, pituatary, etc.   Is there a danger of "mad cow
disease" associated with these products.   Of course the processing and the
testing of the products would depend upon the company producing them.  But
would reliabilty of a reputable company make such products safe?

From owner-molec-model@net.bio.net Sun Jan 31 22:00:00 1999
Path: biosci!news.stanford.edu!logbridge.uoregon.edu!news.maxwell.syr.edu!nntp2.dejanews.com!nnrp1.dejanews.com!not-for-mail
From: Willy Wriggers <wriggers@ucsd.edu>
Newsgroups: bionet.molec-model,bionet.software,bionet.xtallography
Subject: Xtal / EM docking with Situs
Date: Mon, 01 Feb 1999 22:48:34 GMT
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Dear all:

I hereby announce the official release of Situs, a program package for
the docking of protein crystal structures to single-molecule, low-resolution
maps from electron microscopy.

The program package has been developed to provide a robust and quantitative
method for the localization of biomolecular subunits in low-resolution data.
The package makes use of single-molecule density maps that can be obtained by
subtraction of maps from specimens of variable subunit composition. The
central algorithm is a topology-representing neural network to correlate
features within the structural data sets.

Version 1.0 is available at http://chemcca10.ucsd.edu/~situs/




Willy Wriggers, Ph.D. -- URL http://chemcca10.ucsd.edu/~wriggers
Tel: (619)534-2913. Fax: (619)534-7042. E-mail: wriggers@ucsd.edu
Dept Chem & Biochem, UCSD, La Jolla, CA 92093-0365
Dept Cell Biol. MB25, The Scripps Research Institute, La Jolla, CA 92037

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