From owner-molec-model@net.bio.net Sun Aug 01 16:15:00 1999 Path: biosci!fcs280s.ncifcrf.gov!fcrdcnews.NCIFCRF.GOV!washdc3-snf1!crtntx1-snh1.gtei.net!su-news-hub1.bbnplanet.com!news.gtei.net!logbridge.uoregon.edu!dispose.news.demon.net!demon!newsfeed.icl.net!newsfeed.nacamar.de!blackbush.xlink.net!news-kar1.dfn.de!news.embl-heidelberg.de!news.dkfz-heidelberg.de!news.urz.uni-heidelberg.de!not-for-mail From: Andreas Bohne Newsgroups: bionet.molec-model Subject: New Features for RasMol Date: Fri, 30 Jul 1999 10:13:16 +0200 Organization: University of Heidelberg, Germany Message-ID: <37A15E9C.6FBE@gmx.de> NNTP-Posting-Host: zsins1.inet.dkfz-heidelberg.de Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Trace: news.urz.uni-heidelberg.de 933322456 13436 193.174.61.169 (30 Jul 1999 08:14:16 GMT) X-Complaints-To: usenet@news.urz.uni-heidelberg.de NNTP-Posting-Date: 30 Jul 1999 08:14:16 GMT X-Mailer: Mozilla 3.0Gold (X11; I; IRIX 5.3 IP12) Lines: 17 hi, I have modiefied R.Sales's RasMol 2.6. This version has 3 new main menus with several submenus. Furthermore this version supports inline scripting and this version is detecting the pixel depth automatically and set this to the working depth. Find this version at http://www.dkfz-heidelberg.de/spec/rasmol2ab2/ At the moment this version is only for Unix but I hope to find time and knowlege to implement the made changes in the Mac and Win version. I have tested this version on Sun, HP, SGI, Linux and SP2. Have fun Andreas From owner-molec-model@net.bio.net Sun Aug 01 17:20:00 1999 Path: biosci!bcm.tmc.edu!news.msfc.nasa.gov!newspump.monmouth.com!newspeer.monmouth.com!hermes.visi.com!news-out.visi.com!cam-news-hub1.bbnplanet.com!news.gtei.net!newscon02!prodigy.com!not-for-mail From: Newsgroups: bionet.molec-model Subject: AutoExec2000.com Date: 31 Jul 1999 07:39:38 GMT Organization: Prodigy Internet http://www.prodigy.com Lines: 3 Message-ID: <7nu97q$3vf0$9584@newssvr04-int.news.prodigy.com> NNTP-Posting-Host: miamb109-23.splitrock.net X-Trace: newssvr04-int.news.prodigy.com 933406778 3767148 209.156.29.92 (31 Jul 1999 07:39:38 GMT) X-Complaints-To: abuse@prodigy.net NNTP-Posting-Date: 31 Jul 1999 07:39:38 GMT Just ran across this great web site, I thought you would be very interested in! http://www.AutoExec2000.com From owner-molec-model@net.bio.net Mon Aug 02 18:37:00 1999 Path: biosci!MINDSPRING.COM!grizzlyan From: grizzlyan@MINDSPRING.COM (Michael Sherrell) Newsgroups: bionet.molec-model Subject: 377 seqs, synths, LC/MSs, NMRs for sale Date: 2 Aug 1999 12:36:23 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 49 Sender: daemon@net.bio.net Distribution: world Message-ID: <01BEDCE3.0A322D20@user-33qtgv3.dialup.mindspring.com> NNTP-Posting-Host: net.bio.net Sequencers, synthesizers, mass spectrometers, NMRs for sale: Peptide and oligo synthesizers and sequencers: ABI 392: $2,500 (electronics working; add $3,000 for rebuild/warranty) ABI 394: $12,500 (Valve blocks rebuilt; warranteed) ABI 390Z: $4,000 (50-100uM yields) ABI 430: $6,000 (electronics working; add $5,000 for rebuild/warranty) ABI 431: $12,500 (Rebuilt, warranteed) ABI 433: $19,000 (ABI upgrade) PerSeptive 9050+: $6,000 (As is/was working when decommissioned; add $3,500 for rebuild/warranty) ABI 373 stretch: $9,000 (Big dye upgrade; under ABI service contract) ABI 373 stretch: $7,000 (4-filter) ABI 377: $80,000 (96 lanes; under ABI service contract; quantity discounts for 2 or more) ABI 377: $60,000 (48-lane; under ABI contract) ABI Procise 492: $45,000 obo (ABI-certified) LC/Mass spectrometers: Sciex API III+ LC/MS/MS: $ 59,000 (ES, APCI, under PE service contract) Sciex API 300: $100,000 (365 upgrade, PE install/warranty available) HP 1100 benchtop LC/MSD: $120,000 (APCI & API-electrospray, autosampler, DAD detector, < 1 year old) Finnigan LCQ: $120,000 ("Classic" MS^n; 1.5 yrs old; site license included) PE Mariner: $140,000 (1998 model; includes refurb, install and 1 yr. warranty) Finnigan Navigator benchtop LC/MS: $ 75,000; 18 mos. old; factory refurb, install & 90-day warr. included Finnigan TSQ 7000 LC+GC/MS/MS: $ 97,500; current software; API-1 source; under Finnigan service contract Sciex 150 benchtop LC/MS: $ 98,000; 2 yrs old; includes Gilson 215 liquid handler, ELSD detector & HP 1100 HPLC. Finnigan SSQ 7000 LC/MS: $130,000; API-2 source, electrospray + APCI, Excaliber software, factory refurb, 90-day warranty, install included Micromass II: $50,000; ES, APCI, 3 yrs. old, includes HPLC, NOT Z-spray Fisons VG Platform: make offer; to 3000 daltons; under service contract HP 5989B LC+GC/MS: $ 35,000; Extended mass range (2000 amu), hex ion guide; HPLC & warranty avail. Finnigan MAT 90: $30,000; Hi-resolution magnetic sector Fisons VG 2000: <$100,000 MALDI-TOFs: Voyager RP: $60,000; NOT DE; 4 yrs. old; running in lab now LaserMAT 3000: $24,000; new detector and laser; +$2,000/install; service agreements available Hewlett-Packard G2025A $ 50,000 NMRs:     Bruker AMX 600: call for specs and price     Varian Unity 500+: $245,000; broadband; includes install/warranty Varian Unity 500: $180,000; incl. install/warranty     Bruker AM360: $85,000; broadband; widebore; install included     Varian Unity 500: call for price; broadband Also available: Hitachi 570 scanning electron microscope, Kevex detector, running now, $35,000. BD FACSVantage and assorted FACScans Various other seqencers, synthesizers etc. are available; please inquire or check the website. Michael Sherrell Grizzly Analytical 707 887 2919/fax 707 887 9834 www.grizzlyanalytical.com From owner-molec-model@net.bio.net Tue Aug 03 04:52:00 1999 Path: biosci!QUINTESSENZ.AT!gosuu61 From: gosuu61@QUINTESSENZ.AT (Resopiu) Newsgroups: bionet.molec-model Subject: Dream Vacation Getaway!! Win Florida/Cruise Sweepstakes !! Date: 2 Aug 1999 22:52:09 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 26 Sender: daemon@net.bio.net Distribution: world Message-ID: <199908022109WAA25315@yhumils.de> NNTP-Posting-Host: net.bio.net CONGRATULATIONS! PACK YOUR BAGS! You have been Invited to ENTER the Florida/Cruise Getaway Sweepstakes ! ! ! This Dream Vacation WILL be given away. Will You be One of the Lucky Ones? 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NOT MLM. *FREE INFO 24 HOUR MESSAGE CALL 1-416-410-7530 rem - mike_watters998.yahoo.com From owner-molec-model@net.bio.net Wed Aug 04 11:49:00 1999 Path: biosci!newshost.lanl.gov!logbridge.uoregon.edu!newsfeed.berkeley.edu!news-stock.gip.net!news.gsl.net!gip.net!newssvt07.tk!nspixp2!wnoc-tyo-news!news.nc.u-tokyo.ac.jp!gray.ims.u-tokyo.ac.jp!not-for-mail From: GIW '99 cfp Newsgroups: bionet.molec-model Subject: CFP: Genome Informatics Workshop (GIW99) Date: Wed, 04 Aug 1999 21:38:46 +0900 Organization: Human Genome Center, Inst. of Medical Science, Univ. of Tokyo, Japan. Lines: 52 Message-ID: <37A83456.55303520@lily.ims.u-tokyo.ac.jp> Reply-To: giw@ims.u-tokyo.ac.jp NNTP-Posting-Host: pine.ims.u-tokyo.ac.jp Mime-Version: 1.0 Content-Type: text/plain; charset=iso-2022-jp Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 4.6 [ja] (Win95; I) X-Accept-Language: ja Call for Papers The Tenth Workshop on Genome Informatics (GIW '99) December 14-15, 1999 Yebisu Garden Place, Tokyo, Japan ( http://www.hgc.ims.u-tokyo.ac.jp/giw ) [PC Chairman of GIW '99] Kiyoshi Asai (asai@etl.go.jp) [Scope] The Tenth Workshop on Genome Informatics (GIW '99) focuses on Genome Informatics, including, but not limited to, the following areas related to Genome Science: sequence analysis, motif extraction and search, multiple alignment, gene structure prediction, gene function prediction, phylogeny tree, systems for supporting experimental work (mapping, sequencing, primer design, etc.), comparative analysis of genomes, gene expression profile analysis, knowledge extraction from literature, knowledge discovery from databases, linkage analysis program, association analysis, protein structure and function prediction, genome database, pathway analysis, proteome analysis, simulation of biological system, DNA computing, artificial life, which are overall related to Genome Science. [Paper Submission Guidelines] Authors are requested to submit full papers or extended abstracts around 10 pages in one of the following form: - PS file or PDF file or Plain text - until SUBMISSION DEADLINE: August 31, 1999 - to the address: Electronic submission: giw@ims.u-tokyo.ac.jp Satoru Miyano Human Genome Center Institute of Medical Science, University of Tokyo 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan. - The following information should be provided: paper title, author name(s), affiliation(s), postal and e-mail address(es), abstract, and the correspondence author name. [Poster/Software Demos Submission Guidelines] - Submission Deadline: October 10, 1999 - See the details at http://giw.ims.u-tokyo.ac.jp/giw99/ [Organizing Chairman of GIW '99] Satoru Miyano ( miyano@ims.u-tokyo.ac.jp ) Email: giw@ims.u-tokyo.ac.jp Tel: +81-3-5449-5615 Fax: +81-3-5449-5442 Human Genome Center, Institute of Medical Science, University of Tokyo 4-6-1 Shirokanedai, Minato-ku, 108-8639 Tokyo, Japan. From owner-molec-model@net.bio.net Wed Aug 04 15:21:00 1999 Path: biosci!news.stanford.edu!newsfeed.stanford.edu!newsfeed.berkeley.edu!news2.best.com!news3.best.com!nntp1.ba.best.com!not-for-mail From: Alan Williams Subject: [Announce] www.MolBio.org -- New Biology Portal Newsgroups: bionet.general,bionet.software,bionet.info-theory,bionet.molec-model,bionet.cellbiol,bionet.molbio.methds-reagnts,bionet.molbio.proteins,bionet.plants,bionet.plants.education Followup-To: bionet.general Summary: User-Agent: tin/pre-1.4-980818 ("Laura") (UNIX) (FreeBSD/2.2.8-STABLE (i386)) Date: 04 Aug 1999 16:13:21 GMT Lines: 50 Message-ID: <37a866a1$0$13652@nntp1.ba.best.com> NNTP-Posting-Host: fpage2.ba.best.com X-Trace: nntp1.ba.best.com 933783201 13652 alanjohn@206.86.8.18 Xref: biosci bionet.general:33529 bionet.software:23924 bionet.info-theory:7219 bionet.molec-model:2648 bionet.cellbiol:12235 bionet.molbio.methds-reagnts:77887 bionet.molbio.proteins:14655 bionet.plants:22440 bionet.plants.education:5359 There is a new web portal for all things related to molecular biology and bioinformatics (including the related fields of cell biology, biochemistry, genetics, genomics, XXX). Currently www.MolBio.org provides a news service where the web community can post information related to molecular biology (et al.) and bioinformatics. In addition to the news service, www.MolBio.org provides spam free discussion groups. Do you have information to share such as: - Conference - Press Release - Course - Protocol - News Bite - Software - Research Finding - Tip - Database - Web Site - FTP Site - Web Based Program/Tool - Mailing List - Other Related to the fields of: - Biochemistry - Biotechnology/Biotech - Cell Biology - Computational Biology - Genetics - Genomics - Molecular Biology - Other Then please submit it to www.MolBio.org via the news form at http://www.molbio.org/postnews.cgi. The more info you post, the more useful www.MolBio.org will be. The information you post doesn't need to originate from yourself -- it can be anything you come across in searching the web, reading a journal, browsing bionet, etc... If in doubt, post it! If you have any questions, comments, or requests -- feel free to contact me at Alan@MolBio.org. Thanks, Alan Williams www.MolBio.org ps -- www.MolBio.org is loosly setup as a slashdot (www.slashdot.org) for biology. Follow-ups have been directed to bionet.general I seem to be having problems with UCR's news server, so my apologies if multiple posts show up. ************************************************************************ Alan Williams ------------------------------------------------------------------------ University of California, Riverside "Where observation is concerned, Dept. of Botany and Plant Sciences chance favors the prepared mind." Alan@MolBio.org -- Louis Pasteur ************************************************************************ From owner-molec-model@net.bio.net Wed Aug 04 17:39:00 1999 Path: biosci!news.stanford.edu!newsfeed.stanford.edu!skynet.be!tank.news.pipex.net!pipex!server1.netnews.ja.net!warwick!not-for-mail From: Caroline Hadley Newsgroups: bionet.molec-model Subject: Re: New Brookhaven PDB URL ? Date: Wed, 04 Aug 1999 19:26:46 +0100 Organization: none Lines: 11 Message-ID: <37A885E6.46C2E888@globin.bio.warwick.ac.uk> References: <19990710222827.16895.00011341@ng-fw1.aol.com> NNTP-Posting-Host: cc3-146.warwick.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Trace: holly.csv.warwick.ac.uk 933791094 13903 137.205.83.146 (4 Aug 1999 18:24:54 GMT) X-Complaints-To: abuse@csv.warwick.ac.uk NNTP-Posting-Date: 4 Aug 1999 18:24:54 GMT To: Howard Olson X-Mailer: Mozilla 4.01 [en] (Win95; I) X-Priority: 3 (Normal) Howard Olson wrote: > > What is the new URL for the Brookhaven Protein Data Bank? > > Howard this is quite an old message so you hopefully know the answer by now but here it is anyway: www.rcsb.org (rcsb = research collaboratory for structural biology) From owner-molec-model@net.bio.net Fri Aug 06 10:52:00 1999 Path: biosci!CITYDESK.CO.UK!runuu4 From: runuu4@CITYDESK.CO.UK (mon14wes) Newsgroups: bionet.molec-model Subject: Thank You for visiting Atlantic Office Service & Supplies, Inc. Date: 6 Aug 1999 04:52:21 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 13 Sender: daemon@net.bio.net Distribution: world Message-ID: <199908063066WAA31090@yervceso.skku.ac.kr> NNTP-Posting-Host: net.bio.net Thank You for visiting Atlantic Office Service & Supplies, Inc. Atlantic Office Service & Supplies, Inc. is here to serve you the customer with over 25,000 office supplies, faciltity items, and furniture products, with nationwide delivery to your door! FREE shipping & FREE gift with all $50.00 orders or more! For info email: dagnabit1@bigfoot.com with subject office for removal email: dagnabit1@bigfoot.com with subject remove k From owner-molec-model@net.bio.net Mon Aug 09 05:43:00 1999 Path: biosci!poyry.se!hotihi99 From: hotihi99@poyry.se (lokp04r4) Newsgroups: bionet.molec-model Subject: Beat the competition. 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This offer is being made under an exemption under the provisions of The Securities Act of 1933-1934, as amended. 15647e65j-59436j4w#Arj From owner-molec-model@net.bio.net Tue Aug 10 00:31:00 1999 Path: biosci!IBMS.SINICA.EDU.TW!mjhwang From: mjhwang@IBMS.SINICA.EDU.TW Newsgroups: bionet.molec-model Subject: postdoc in Taiwan Date: 9 Aug 1999 18:31:23 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 11 Sender: daemon@net.bio.net Distribution: world Message-ID: <199908100130.JAA00368@ibms.sinica.edu.tw> NNTP-Posting-Host: net.bio.net A computational biology/chemistry postdoctoral research position is immediately available at the Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan. Applicants please send your CV to: Dr. Ming-Jing Hwang mjhwang@ibms.sinica.edu.tw fax: +886-2-2788-7641 http://www.ibms.sinica.edu.tw/~mjhwang/index.html From owner-molec-model@net.bio.net Wed Aug 11 00:09:00 1999 Path: biosci!rutgers!gatech!207.138.35.59.MISMATCH!nntp.primenet.com!nntp.gctr.net!dispose.news.demon.net!demon!newsfeed.icl.net!newsfeed.axxsys.net!news.idt.net!netnews.com!howland.erols.net!newsfeed.fast.net!uunet!ffx.uu.net!news7-gui.server.ntli.net!ntli.net!not-for-mail From: Newsgroups: bionet.molec-model Subject: Assistance required from anyone in the UK Date: 11 Aug 1999 00:45:58 GMT Organization: NTL Internet News Service Message-ID: <7oqh46$l5k$2561@nclient7-gui.server.ntli.net> NNTP-Posting-Host: p44-castor-gui.tch.cableol.net X-Trace: nclient7-gui.server.ntli.net 934332358 21684 194.168.5.44 (11 Aug 1999 00:45:58 GMT) X-Complaints-To: postmaster@ntli.net NNTP-Posting-Date: 11 Aug 1999 00:45:58 GMT Lines: 12 Hello, people . . . 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Is there a single letter code for Y-SO3, or can I edit the Swiss PDB viewer to incorporate the sulfation? Thanks for your help, Dave From owner-molec-model@net.bio.net Sat Aug 21 06:22:00 1999 Path: biosci!zipmail.com.br!vendco1 From: vendco1@zipmail.com.br Newsgroups: bionet.molec-model Subject: Have You Ever Considered ? Date: 21 Aug 1999 00:22:45 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 74 Sender: daemon@net.bio.net Distribution: world Message-ID: <515.819315.130015@server> NNTP-Posting-Host: net.bio.net Have You Ever Considered Starting Your Own Business? If you have; This information may be valuable to you. 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Thanks, Merchant Services 310-877 213-7235 From owner-molec-model@net.bio.net Wed Aug 25 08:01:00 1999 Message-ID: <37BAEE30.BEC805CB@NOSPAM.bioz.unibas.ch> Date: Wed, 18 Aug 1999 19:32:32 +0200 From: Ansgar Philippsen Organization: Biozentrum, University of Basel, Switzerland X-Mailer: Mozilla 4.61 [en] (X11; I; Linux 2.2.5-15 i686) X-Accept-Language: en MIME-Version: 1.0 Newsgroups: bionet.molec-model Subject: Visualizing Structural Biology with DINO Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit NNTP-Posting-Host: quark.bioz.unibas.ch X-Trace: 18 Aug 1999 19:30:53 +0100, quark.bioz.unibas.ch Lines: 58 Path: biosci!rutgers!uwm.edu!arclight.uoregon.edu!logbridge.uoregon.edu!feed1.news.rcn.net!rcn!howland.erols.net!f.de.uu.net!news.uni-stuttgart.de!news.belwue.de!news-zh.switch.ch!maser.urz.unibas.ch!quark.bioz.unibas.ch Announcing new software for structural biology: DINO, a realtime 3D visualization tool for structural biology data Version 0.7.5 is available for free from the homepage at: http://www.bioz.unibas.ch/~xray/dino DINO aims to visualize structural data obtained from x-ray crystallography, structural NMR, electron and atomic-force microscopy and bioinformatics (such as molecular dynamics, structure prediction, molecular surface calculation or electrostatic potential calculations). 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Most planned features have been implemented, however, and current work is dedicated to improving code robustness, hunting bugs and implementing more formats. For more information and example pictures, please visit the homepage at http://www.bioz.unibas.ch/~xray/dino For comments, questions, bug reports, etc please mail to dino at bioz dot unibas dot ch From owner-molec-model@net.bio.net Thu Aug 26 04:02:00 1999 Path: biosci!candseek.com!915608 From: 915608@candseek.com Newsgroups: bionet.molec-model Subject: JOBOP SCIENTIST URINARY INCONTINENCE Date: 25 Aug 1999 22:02:16 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 76 Sender: daemon@net.bio.net Distribution: world Message-ID: <199908260502.WAA29050@net.bio.net> NNTP-Posting-Host: net.bio.net Since your email address was listed on a related web site page or database, I thought you might help. I am seeking an individual within the following conditions: a Scientist who will provide insight and contextual rationale to both the selection of targets and the design and validation of in vitro and in vivo models to discover drugs for treatment of urinary incontinence. The successful candidate will have a broad understanding of lower urinary tract physiology, pathophysiology and pharmacology, including autonomic and somatic control of micturition, and regulation of detrusor function. The candidate will possess a M.S., M.D. or Ph.D. with experience in neurophysiology or pharmacology, with a strong focus on the lower urinary tract and experience with in vivo models of lower urinary tract physiology and pathophysiology. Our client is a leading pharmaceutical firm with research facilities in North Carolina and can provide excellent benefits (health insurance, dental, and vision plan, paid vacation and more). 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All employment opportunity notices sent via the Candidate Seeker system contain the acronym "JOBOP" in the subject so they may be easily filtered or blocked if so desired. Other email addresses may be permanently deleted from future contact by emailing a single blank message from the desired address to nomail@candseek.com. Enter additional addresses into the body of the message and they will also be added to the "nomail" list Please feel free to contact the candidateseeker.com feedback line at 609-584-5499. Do not use this number for job related questions. All job related questions should be directed to the employer by replying to contact addresses or phone numbers indicated at the end of the job description message. Mailed By: candidateseeker.com 510 Horizon Center Robbinsville, NJ 08691 From owner-molec-model@net.bio.net Thu Aug 26 14:36:00 1999 Path: biosci!news.stanford.edu!newsfeed.stanford.edu!paloalto-snf1.gtei.net!su-news-hub1.bbnplanet.com!news.gtei.net!newsfeed.direct.ca!news.maxwell.syr.edu!easynet-tele!easynet.net!server5.netnews.ja.net!news.ncl.ac.uk!not-for-mail From: Simon Andrews Newsgroups: bionet.molec-model Subject: Re: tyrosine sulfation/FASTA Date: Thu, 26 Aug 1999 16:21:04 +0100 Organization: University of Newcastle upon Tyne Lines: 35 Message-ID: <37C55B60.5C421C78@ncl.ac.uk> References: NNTP-Posting-Host: arabinan.ncl.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Mailer: Mozilla 4.51 [en] (Win98; I) X-Accept-Language: en "Meh, David" wrote: > > I'm trying to model a peptide which contains sulfated tyrosine residues to a > known crystal structure from the PDB using Swiss PDB Viewer. I can get an > okay fit, but my sequence remains unsulfated in the model and I'm sure the > fit would be better if it were sulfated. The peptide sequence is imported as > a FASTA code with only single letter abbreviation. Is there a single letter > code for Y-SO3, or can I edit the Swiss PDB viewer to incorporate the > sulfation? > Thanks for your help, > Dave If there is a structure in the PDB database which incorporates a sulphated tyrosine then you could look in the PDB text file and see how that annotates the sulphation. I suspect that the extra atoms will probably be added to the tyrosine using the HETATOM tag and specifying the correct connect information. What you could try is saving the extra groups from the tyrosine to a seperate file, superimposing this onto the tyrosine in the model and merging the two layers to incorporate it into the models PDB file (You can do all of this in Swiss PDB). You could try resubmitting this for modelling but I'm not really sure that it would figure out what you were trying to do. Let us know if you find a way to do this. Simon. -- Simon Andrews Dept BNS University of Newcastle upon Tyne Tel +44 191 222 6000 ext 6596 s.r.andrews@ncl.ac.uk From owner-molec-model@net.bio.net Fri Aug 27 08:00:00 1999 Path: biosci!internet!biosci!not-for-mail From: biohelp (BIOSCI Administrator) Newsgroups: bionet.molec-model Subject: BIOSCI/bionet miniFAQ & Fundraiser Date: 27 Aug 1999 02:00:13 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 239 Sender: daemon@net.bio.net Distribution: world Message-ID: <199908270900.CAA21692@net.bio.net> NNTP-Posting-Host: net.bio.net (LAST REVISION: 14-AUG-99) This BIOSCI "miniFAQ" is designed to answer the questions that come up the *most frequently*. The main BIOSCI FAQ (Frequently Asked Questions) is accessible on the World Wide Web at URL http://www.bio.net/. If you can not find an answer to your question in this or other documentation, the BIOSCI technical support staff answers e-mail queries sent to biosci-help@net.bio.net We can only answer questions about the use of the newsgroups and mailing lists. We unfortunately do not have the staff to do Internet information searches or answer scientific questions. Please post those to the appropriate BIOSCI/bionet newsgroups. Contents: -------- 0) BIOSCI NEEDS YOUR SUPPORT!! 1) Using the WWW to access the BIOSCI/bionet newsgroups. 2) What to do about "spams," i.e., junk mail, ads, etc. 3) Examples of subscribing and unsubscribing to the mailing lists. 4) The BIOSCI user address and research interest directory. 0) BIOSCI NEEDS YOUR SUPPORT!! ------------------------------ BIOSCI's government funding has been expended, and we are now operating solely from advertising revenue that we have raised from our Web site at http://www.bio.net/. We need just a few minutes of your time to help us serve you. You can do two important things which will take very little time for you individually and will immensely help us continue to help you. First, please use our WWW system at http://www.bio.net/ to access the archives. You can post or reply to messages via your Web browser as described in item #1 below. Your usage helps attract sponsors. If you contact any of our sponsors, please be sure to thank them for supporting BIOSCI. It is critical for them to get this feedback if they are to continue their sponsorship for the long term. Second, if you work for a company or organization that provides products or services of interest to the biology community, please pass this message on to your marketing or marketing communications department or other appropriate group. Please ask them to help support BIOSCI by sponsoring our Web site and explain the uses and benefits of the system to the biology community. If they are interested, they can then contact us for further information at our tech support address, biosci-help@net.bio.net. 1) Using the WWW to access the BIOSCI/bionet newsgroups. -------------------------------------------------------- All BIOSCI/bionet full newsgroups are accessible through the World Wide Web (WWW) at URL http://www.bio.net. One can read and reply publicly or privately to both recent postings and archived messages through one's Web browser if it is configured properly to send e-mail. Each newsgroup is equipped with its own WAIS index. The main BIOSCI home page also has access to the BIO-JOURNALS Table of Contents database WAIS index and the BIOSCI user address database described in another item further below. 2) What to do about "spams," i.e., junk mail, ads, etc. ------------------------------------------------------- BIOSCI is a set of parallel USENET newsgroups (the "bionet" groups), mailing lists, and a hypermail archive at URL http://www.bio.net/. The same postings are distributed on all media (except for a small number of mailing-list-only groups at net.bio.net). Unfortunately it is becoming a despicable practice on the Internet (by a few people out to make a fast buck) to do automated mass postings to thousands of newsgroups and mailing lists. These attempts to grab free advertising are refered to as "spams" in the usual, somewhat boneheaded, net terminology. USENET is more susceptible to this practice, and many spams originate on the USENET groups and then are passed on to the mailing lists. However, spammers also get lists of mailing addresses and hit these too, so neither medium is immune. What should you do personally if you get junk mail? --------------------------------------------------- Just delete it and move on without reading it further. Filing a protest is becoming increasingly useless because spammers are often disguising the addresses where the messages are sent from. Unless you really understand Internet mail systems, your attempt at protest by sending replies to the message will often end up being sent to the address of an innocent person that the spammer is victimizing. What can BIOSCI/bionet do to protect its newsgroups? ---------------------------------------------------- The only solution currently available is to moderate the newsgroup. If this newsgroup is already moderated, then you are in good shape. Moderation protects the USENET distribution from about 95% of the spams that are being sent to date and protects the mailing lists completely. Moderation means, however, that someone has to take the time to review each message before it goes out. We have set up software here that simply allows the moderator to forward to an address at net.bio.net messages that (s)he wishes to have distributed. This takes no more time than that needed to read the message and pass it on, say about 1 min. per message. Most newsgroups currently have a discussion leader who is responsible for their newsgroup. The discussions leaders and their e-mail addresses are listed in the BIOSCI Information Sheet which is available on the Web at http://www.bio.net/. If a newsgroup is being hit with too many junk postings, please contact the discussion leader for that group and see if there is interest in moderating the group. Please do not assume that by simply posting a complaint to the newsgroup itself, anyone on the BIOSCI staff will act on your complaint. With close to 100 newsgroups to run, the BIOSCI staff has to rely on the discussion leaders of each newsgroup to report problems directly to us at biosci-help@net.bio.net. We will moderate any of our newsgroups if the discussion leader tells us that the readership of the group wishes to do so and if a moderator is willing to do the work. For most BIOSCI/bionet groups, this entails only a few minutes of work each day. Moderating a newsgroup will resolve probably 95% of the junk postings on the USENET distribution. Unfortunately there are easy ways for determined spammers to override the moderation mechanism on USENET, but we can protect our e-mail subscribers from unwanted postings if the newsgroup is moderated. You can also access our newsgroups over the WWW at URL http://www.bio.net. While this Web interface will not stop spammers from trying to post to the groups, this will give you yet another way, besides using USENET news, to keep the junk out of your personal mail files. For those of you with local USENET news systems, the Web interface will also give you faster access to new newsgroups and recent postings. 3) Examples of subscribing and unsubscribing to the mailing lists. ------------------------------------------------------------------ PLEASE NOTE: The BIOSCI management does NOT act on subscription/unsubscription requests that are posted improperly to the newsgroups and mailing lists. People who do this only bother everyone on the lists to no avail. Please be sure to follow the proper procedures below. Gory details are in the BIOSCI Information sheets on the Web at http://www.bio.net. Below we give an example utilizing the METHODS-AND-REAGENTS list at both of our two BIOSCI sites: Users in the Americas and Pacific Rim countries who use the BIOSCI ------------------------------------------------------------------ node at computer net.bio.net: ---------------------------- A) Determine the "listname" which is the <=8 character mail address ^^^^^^^^^^^^^ for the group. These can be found in the BIOSCI Info. Sheet. For the METHODS-AND-REAGENTS group the mailing address is methods@net.bio.net. The listname is the portion of the address to the left of the @ sign, i.e., "methods". The listname is used with the "subscribe" and "unsubscribe" commands illustrated below. B) Mail all commands in the body of a mail message addressed to biosci-server@net.bio.net. Do NOT send commands to the newsgroup posting addresses! Leave the Subject: line blank, any text on it will be ignored. C) In the body of your message put one or more of the following commands with an "end" command on the last line, e.g., subscribe methods unsubscribe methods end Do NOT put your e-mail address or other text on these lines. The server only allows you to cancel your subscription if the address on your mail header matches the address on our mailing list. Please ask for help at biosci-help@net.bio.net if your address has changed, e.g., if you know you are on the list but the server tells you that you are not a member. Users in Europe, Africa, and Central Asia who use the BIOSCI node at -------------------------------------------------------------------- the UK-HGMP-Resource Centre (known as hgmp.mrc.ac.uk): ----------------------------------------------------- A) Determine the "listname" which is the <=8 character mail address ^^^^^^^^^^^^^ for the group. These can be found in the BIOSCI Info. Sheet. For the METHODS-AND-REAGENTS group the mailing address is methods@hgmp.mrc.ac.uk. The listname is the portion of the address to the left of the @ sign, i.e., "methods". The listname is used with the "subscribe" and "unsubscribe" commands illustrated below. B) Mail all commands in the body of a mail message addressed to majordomo@hgmp.mrc.ac.uk. Do NOT send commands to the newsgroup posting addresses! Leave the Subject: line blank, any text on it will be ignored. C) In the body of your message put one or more of the following commands with an "end" command on the last line, e.g., subscribe methods unsubscribe methods end Please ask for help at biosci@hgmp.mrc.ac.uk if your address has changed, e.g., if you know you are on the list but the server tells you that you are not a member. 4) The BIOSCI user address and research interest directory. ----------------------------------------------------------- Please take this opportunity to add your name, address, and research interest information to the BIOSCI User Address Database if you have not already done so. You can fill out the address form directly through our Web page at URL http://www.bio.net/adrform.html. The address database is reindexed nightly for WWW access (the URL is http://www.bio.net/). If you are not directly on the Internet but can reach it by e-mail, please use our waismail server to access the user directory. waismail use is described above. You can also request a user address form by e-mail from biosci-help@net.bio.net. Please check your database entry from time-to-time to see if your address information is still up-to-date. Because of our limited personnel resources, we ask that you resubmit a *complete* form to revise your entry; we only replace complete entries and do not have resources to edit old forms. From owner-molec-model@net.bio.net Fri Aug 27 19:44:00 1999 Path: biosci!MINDSPRING.COM!grizzlyan From: grizzlyan@MINDSPRING.COM (Michael Sherrell) Newsgroups: bionet.molec-model Subject: ABI 377 for sale Date: 27 Aug 1999 13:44:58 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 6 Sender: daemon@net.bio.net Distribution: world Message-ID: <01BEF092.248770A0@user-33qtg9p.dialup.mindspring.com> NNTP-Posting-Host: net.bio.net ABI 377, 1998 model, 96-lane, still under service contract, Sequence Analysis and Genescan, computer, monitor, buffer chambers, spacers, combs and cassettes, US$72,000. Service records available. Must act by Wednesday Sept. 1. Michael Sherrell Grizzly Analytical (USA) 707 887 2919/fax 707 887 9834 www.grizzlyanalytical.com From owner-molec-model@net.bio.net Sun Aug 29 11:38:00 1999 Path: biosci!ODEON.POLYTECHNIQUE.FR!rukuiwoe1 From: rukuiwoe1@ODEON.POLYTECHNIQUE.FR (juiksiw) Newsgroups: bionet.molec-model Subject: ADV: Boost--Windows--reliability Date: 29 Aug 1999 05:38:36 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 25 Sender: daemon@net.bio.net Distribution: world Message-ID: <199908293955CAA42269@unmsie.slkeroi.dbcorp.ab.ca> NNTP-Posting-Host: net.bio.net To-be-removed: email grove34@bigfoot.com with the subject "delete" ----------------------------------------------------------- Dear Windows User, Now you can boost the reliability of ordinary Windows 3.x, 95 and 98 to nearly the level of Windows NT, Microsoft's professional and industrial version of Windows. The new WinFix(tm) 4.2 is a very effective way to improve the reliability of Windows, because it makes Windows fault-tolerant and self-repairing. And WinFix is very safe, because it operates completely independent of Windows. WinFix is the safest, most effective way to keep you working, by keeping your PC working non-stop. To find out more about WinFix, send an email to grove34@bigfoot.com with the subject "winfix" ** Distributor Referal #5784 ** ----------------------------------------------------------- This announcement is aimed at PC users who asked to be kept informed about new developments in Windows(tm) technology. ------------------------------------------------- From owner-molec-model@net.bio.net Sun Aug 29 23:50:00 1999 Path: biosci!DOLORES.SE!koki71 From: koki71@DOLORES.SE (Fine Tuning) Newsgroups: bionet.molec-model Subject: CABLE TV Premium Channels....No extra charge Date: 29 Aug 1999 17:50:25 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 184 Sender: daemon@net.bio.net Distribution: world Message-ID: <199908293350DAA23031@coolNeasyfun.ru> NNTP-Posting-Host: net.bio.net This is really COOL! ENHANCE Your Cable TV! EASY to assemble plans for only $7.00 ! GET THE MOST out of your cable TV by using this SIMPLE "Fine Tuning" device! YOU WILL HAVE GREAT RESULTS! YOU will be enjoying enhanced cable viewing in just a few days! This Cable TV FINE TUNING DEVICE will make your viewing experince MUCH MORE ENJOYABLE! There is one problem though. It may accidentally receive stations that NORMALLY are offered by your cable provider for an additional fee. This would include: BOX OFFICE HIT MOVIES! PREMIUM SPORTING EVENTS! SPECIAL INTEREST PROGRAMING! And even ADULT ENTERTAINMENT! You can EASILY assemble a cable fine tuner in less than 30 minutes! You have probably seen many advertisments for similar plans......... BUT OURS are BETTER! We have compared it to all the others and have actually IMPROVED the quality and SIMPLIFIED the design !!! ** We even include PHOTOS! ** OUR PLANS ARE BETTER! We have NEW, EASY TO READ,EASY to assemble plans for only $7.00! We have seen them advertised for as much as $29.00 and you have to wait weeks to receive them! WHAT THE OTHERS SAY IS TRUE! Parts are available at "The TV HUT" or any electronics store. Trademark rights do not allow us to use a national electronics retail chains' name but there is one in your town! Call and ask them BEFORE you order! They are very familiar with these plans! You will need these easy to obtain parts : 270-235 mini box 271-1325 2.2k ohm resistor 278-212 chasis connectors RG59 coaxial cable #12 copper wire Variable capacitor They may have to special order the variable capacitor, But WHY WAIT for a special order? WE have them! WE have secured a supply of the capacitors directly from the manufacturer and We WILL include one with your plans for an ADDITIONAL $10.00 only! All you need now is the EASY TO ASSEMBLE plans to show you how to assemble this educational device in 30 MINUTES! It is LEGAL, providing of course you use these plans for EDUCATIONAL PURPOSES only. See first hand and LEARN how this SIMPLE circuitry works! If you intend to use these plans for any other purpose DO NOT ORDER them. IT'S FUN TO BUILD! We're sure you'll enjoy this project! This is a unique opportunity for hobbiest of ANY skill level to learn simple circuitry! Learn how easy "Fine Tuning" is! $ 7.00 for plans only $10.00 for variable capacitor only $17.00 for The easy to assemble plans and one variable capacitor! Please send check or money order payable to: FINE TUNING PMB #287 99 Park Ave. New York, N.Y. 10016 WE pay postage and handling! Please allow 10 days for delivery. Thank You /\ \/ /\ sMon 4 sending me From owner-molec-model@net.bio.net Mon Aug 30 09:23:00 1999 Path: biosci!HOTMAIL.COM!pplegal From: pplegal@HOTMAIL.COM Newsgroups: bionet.molec-model Subject: HOT NEW BUSINESS FOR YOUR AREA! Date: 30 Aug 1999 03:23:29 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 118 Sender: daemon@net.bio.net Distribution: world Message-ID: <0000357c00c4$00000cd0$00000ed0@212.19.195.12> NNTP-Posting-Host: net.bio.net

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From owner-molec-model@net.bio.net Mon Aug 30 19:49:00 1999 Path: biosci!ARCH.CURTIN.EDU.AU!sewing28 From: sewing28@ARCH.CURTIN.EDU.AU Newsgroups: bionet.molec-model Subject: Unsold Orders: SEW & Serge SEWING Machines! Date: 30 Aug 1999 13:49:20 -0700 Organization: BIOSCI International Newsgroups for Molecular Biology Lines: 160 Sender: daemon@net.bio.net Distribution: world Message-ID: <496.693697.60882@unknown> NNTP-Posting-Host: net.bio.net  

There isn't any need to reply to this message to be removed from our mailing list.  This is a 1 time mailing, you will not be contacted again.  Thank You for your patience. 
 
  
 

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Sewing Discounters of America is an authorized sewing machine dealer in the South Florida area. We are a complete sales & service center for all makes and models of sewing machines- Proudly serving the sewing public Since 1977.
 
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