From owner-pseudomonas@net.bio.net Fri Feb 02 22:00:00 1996
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From: pnealen@mail2.sas.upenn.edu (Paul M. Nealen)
Newsgroups: bionet.microbiology,sci.bio.microbiology,bionet.organisms.pseudomonas
Subject: Pseudomonas transformation
Date: 3 Feb 1996 20:34:08 GMT
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I am seeking information on transformation of Pseudomonas - I know that 
37 degrees and Ca++ are used, as is 37 degrees and Mg++.  Have any other 
temperature/ion combinations been used?

Thanks -

Paul

--


------------------------------------------------------------------------------
Paul M. Nealen                                  tel: (215) 898-6559
Biology Department                              fax: (215) 898-8780
University of Pennsylvania
Philadelphia PA 19104-6018                      pnealen@mail.sas.upenn.edu
------------------------------------------------------------------------------

From owner-pseudomonas@net.bio.net Sat Feb 03 22:00:00 1996
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From: corboy@utdallas.edu
Newsgroups: bionet.microbiology,sci.bio.microbiology,bionet.organisms.pseudomonas
Subject: Re: Pseudomonas transformation
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Date: 3 Feb 1996 21:47:28 -0600
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Paul M. Nealen (pnealen@mail2.sas.upenn.edu) wrote:

> I am seeking information on transformation of Pseudomonas - I know that 
> 37 degrees and Ca++ are used, as is 37 degrees and Mg++.  Have any other 
> temperature/ion combinations been used?

> Thanks -

> Paul

> --

I'm assuming by 37 deg you mean the heat shock.  If so, then in the past 
we used cells treated with Mg and heat shocked at 42 deg just like E 
coli.  This worked, but since all we were asking for was uptake of 
supercoiled plasmids previously constructed and verified in E coli, 
efficiency was not a problem.  However, we now use electroporation 
following the protocol in the BRL handbook that comes with the voltage 
booster.  This works very well, is quicker, and the cells are easier to 
make.  A caution, tho, I routinely use 20ul of EP competent cells + 0.1ug 
or so of plasmid, and if I plate more than 1ul of the 20 I get confluent 
plates.  Hope this helps, but if you don't have an electroporator, the Mg 
and 42 deg works well enough as long as you are not trying transformation 
say ligation reactions.

Michael J. Corboy
University of Texas at Dallas
Molecular and Cell Biology

From owner-pseudomonas@net.bio.net Sun Feb 04 22:00:00 1996
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From: Stephan.Heeb@Lbm.unil.ch (Stephan Heeb)
Newsgroups: bionet.microbiology,sci.bio.microbiology,bionet.organisms.pseudomonas
Subject: Re: Pseudomonas transformation
Date: Mon, 05 Feb 1996 15:48:57 +0200
Organization: University of Lausanne CH (Switzerland)
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Xref: biosci bionet.microbiology:4842 sci.bio.microbiology:2589 bionet.organisms.pseudomonas:60

In article <4f0gs0$6no@netnews.upenn.edu>, pnealen@mail2.sas.upenn.edu
(Paul M. Nealen) wrote:

> I am seeking information on transformation of Pseudomonas - I know that 
> 37 degrees and Ca++ are used, as is 37 degrees and Mg++.  Have any other 
> temperature/ion combinations been used?
> 
> Thanks -

Here you have the protocol we are using for routine tranformation of
Pseudomonas fluorescens strain CHA0.

Transformation of this strain is not possible with electroporation (high
frequencies of mutations were observed) and the temperatures should not
exceed 35°C (the strain won't grow at 37°C). This method is a modification
of the stadard protocol described for E. coli in "Molecular Clonig, A
Laboratory Manual"; Sambrook et al. 1990)

Good luck,

        Stephan Heeb             

        Lab. Biol. Micr.          e-mail: Stephan.Heeb@LBM.unil.ch
        Universite de Lausanne
        1015 Lausanne
        Switzerland

===================

LBM PROTOCOLS
-------------

PREPARATION OF FROZEN STOCKS OF COMPETENT CELLS AND TRANSFORMATION OF
PSEUDOMONAS FLUORESCENS CHA0

Dilute 300 ul of a fresh overnight culture into 30 ml NYB and incubate
with shaking at 35°C (to prevent restriction) until OD600 = 1.8-2.0

Centrifuge 5 min. at 5'000 rpm 4°C in a Corex tube and resuspend cells in
7.5 ml of chilled 0.1 M calcium chloride using a Pasteur pipette.

Leave on ice for 30 min.

Centrifuge 5 min. at 5'000 rpm 4°C and resuspend cells in 1.5 ml of
chilled 0.1 M calcium chloride using a Pasteur pipette.

* Add 50 ul of DMSO, mix gently by swirling, and store the suspension on
ice for 15 minutes.

* Add an additional 50 ul of DMSO to the suspension. Mix gently by
swirling, and then return the suspension to an ice bath.

* Working quickly, dispense 100 µl aliquots of the suspensions into
chilled, sterile Eppendorf tubes. Snap-freeze the competent cells by
immersing the thightly closed tubes in liquid nitrogen or in a dry
ice/ethanol bath. Store the tubes at -70°C until needed.

* When needed, thaw the cells in an ice bath. Store the cells on ice for
10 minutes.

Mix 100-500 ng plasmid DNA with 100 ul of competent cells.

Leave on ice for 30 min.

Heat pulse at 42-43°C for 2 min.

Add prewarmed (35°C) NYB to complete 1 ml and incubate shaken at 35°C for
1 to 3 hrs depending on the plasmid copy number (less time is required for
high copy number plasmids).

Plate on selective media.

From owner-pseudomonas@net.bio.net Mon Feb 05 22:00:00 1996
Newsgroups: bionet.organisms.pseudomonas
Path: biosci!rutgers!rockyd!news.sprintlink.net!news.bluesky.net!solaris.cc.vt.edu!newsfeed.internetmci.com!howland.reston.ans.net!Germany.EU.net!ieunet!news.tcd.ie!mac03.arches.pclab.tcd.ie!user
From: kpryan@tcd.ie (Sean Ryan)
Subject: Irish First Class Hons Parasitology Grad. for Ph.d?
Message-ID: <kpryan-0602961043090001@mac03.arches.pclab.tcd.ie>
Sender: usenet@news.tcd.ie (TCD News System )
Organization: Trinity College, Dublin 2
Date: Tue, 6 Feb 1996 09:37:45 GMT
Lines: 13

   I am a graduate of Trinity College Dublin with a first class honours
degree in zoology and a specialisation in Zoology and am now looking for a
suitable Ph.D. project in the epidemiology/pathology of a parasite of
medical or veterinary importance. If anybody has a position for a Ph.D.
student with excellent qualifications or who knows of somebody who might I
would appreciate a response to

                        kpryan@tcd.ie  

   Response from Europe/Australia especially welcome, all replies will be
acknowledged
            Thanks
                  Sean Ryan

From owner-pseudomonas@net.bio.net Sun Feb 11 22:00:00 1996
Path: biosci!agate!howland.reston.ans.net!tank.news.pipex.net!pipex!lade.news.pipex.net!pipex!ggr.co.uk!ussun2n.glaxo.com!concert!bigblue.oit.unc.edu!not-for-mail
From: David Parsons <dparsons@med.unc.edu>
Newsgroups: bionet.organisms.pseudomonas
Subject: Methods to detect Pseudomonas aeruginosa in histological slides?
Date: 12 Feb 1996 20:38:06 GMT
Organization: UNC - School of Medicine, CF/Pulmonary Research& Treatment Center
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Greetings again, 

I need to quantify, or at least identify the presence of, Pseudomonas in 10% neutral 
bufferred fomalin fixed histological slides (standard light  microscopy).  I am 
taking sections from the decalcified (formic acid in formalin) mouse nose; the usual 
bacteriological grind-and plate-approach is not workable due to frequent overgrowths 
and inabilitiy to reliable define where exactly the bacteria came from in the nose. 
 
I have used the Brown-Hopps stain, and that is <OK>, but hard to differentiate 
bugs from all the other nasal junk in the sections of the nose, and quantitation 
would be a nightmare;  I wonder if there is a more specific stain - and antibody, a 
flourescent method, or anything else, that I could use in these sections.  Or can I 
tag these Pseudomonas before they go into the nose with something that will last 
over several days? 

Classical solid science,  as well 'as wild-and-crazy' suggestions welcome.  

Thanks pseudo-persons! 

Dr David Parsons
UNC@ Chapel Hill
Dept of Medicine




From owner-pseudomonas@net.bio.net Tue Feb 13 22:00:00 1996
Path: biosci!daresbury!yama.mcc.ac.uk!peer-news.britain.eu.net!tank.news.pipex.net!pipex!news.sprintlink.net!news.gte.net!news
From: max@gte.net
Newsgroups: bionet.organisms.pseudomonas
Subject: Pseudo in water--illness??
Date: 13 Feb 1996 23:50:58 GMT
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What types of Pesudomonads if any would cause illness when injested (via drinking 
water)??


From owner-pseudomonas@net.bio.net Tue Feb 13 22:00:00 1996
Newsgroups: bionet.organisms.pseudomonas
Path: biosci!lhc.nlm.nih.gov!crick.sura.net!lamarck.sura.net!newsfeed.internetmci.com!howland.reston.ans.net!Germany.EU.net!ieunet!news.tcd.ie!mac01.arches.pclab.tcd.ie!user
From: kpryan@tcd.ie (Sean Ryan)
Subject: Irish First Class Hons Parasitology Grad for Ph.D.
Message-ID: <kpryan-1402961107360001@mac01.arches.pclab.tcd.ie>
Sender: usenet@news.tcd.ie (TCD News System )
Organization: Trinity College, Dublin 2
Date: Wed, 14 Feb 1996 10:06:20 GMT
Lines: 12

   I am a graduate of zoology from Trinity College Dublin with a first
class hons degree and a specialisation in parasitology and am now looking
for a suitable Ph.D. program on the epidemiology/pathology of (a)
parasite(s) of medical/veterinary importance. If any body has a place for
a Ph.D student or knows of someone who might I would apreciate an e-mail
to
                                                kpryan@tcd.ie

   Thanks   
               Sean Ryan

replies from Australia/Europe especially welcome

From owner-pseudomonas@net.bio.net Thu Feb 15 22:00:00 1996
Path: biosci!internet!biosci!not-for-mail
From: biohelp (BIOSCI Administrator)
Newsgroups: bionet.organisms.pseudomonas
Subject: BIOSCI miniFAQ, ver. 14-DEC-95
Date: 16 Feb 1996 02:00:32 -0800
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(LAST REVISION: 14-DEC-95)

This BIOSCI "miniFAQ" is designed to answer the questions that come up
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Questions) is accessible on the World Wide Web at URL
http://www.bio.net/.

	Contents:
	--------
	1) Using the WWW to access the BIOSCI/bionet newsgroups.

	2) What to do about "spams," i.e., junk mail, ads, etc.

	3) Examples of subscribing and unsubscribing to the mailing lists.

	4) The BIOSCI user address and research interest directory.


1) Using the WWW to access the BIOSCI/bionet newsgroups.
--------------------------------------------------------
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-------------------------------------------------------
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				biosci-help@net.bio.net

From owner-pseudomonas@net.bio.net Fri Feb 16 22:00:00 1996
Path: biosci!news.Stanford.EDU!nntp-hub2.barrnet.net!news1.digital.com!decwrl!nntp.crl.com!acara.snsnet.net!HiWAAY.net!news.sprintlink.net!tank.news.pipex.net!pipex!swrinde!cs.utexas.edu!news.unt.edu!news
From: farinha@cas1.unt.edu (Mark Farinha)
Newsgroups: bionet.organisms.pseudomonas
Subject: Re: Pseudo in water--illness??
Date: 16 Feb 1996 20:03:17 GMT
Organization: University of North Texas
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In article <4fr852$m66@duey.gte.net>, max@gte.net says:
>
>What types of Pesudomonads if any would cause illness when injested (via drinking 
>water)??
>
No bacteria like to be made fun of!

From owner-pseudomonas@net.bio.net Wed Feb 21 22:00:00 1996
Path: biosci!daresbury!keele!peer-news.britain.eu.net!tank.news.pipex.net!pipex!newsfeed.internetmci.com!in1.uu.net!news.u.washington.edu!carson.u.washington.edu!tmcmille
From: Tia McMillen <tmcmille@u.washington.edu>
Newsgroups: bionet.organisms.pseudomonas
Subject: Re: Pseudo in water--illness??
Date: Thu, 22 Feb 1996 09:58:20 -0800
Organization: University of Washington
Lines: 15
Message-ID: <Pine.PTX.3.91j.960222095500.20466A-100000@carson.u.washington.edu>
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In-Reply-To: <4fr852$m66@duey.gte.net>

I don't know much about pseudomonas, but in 1988 I was taken to the 
hospital and diagnosed with 2, 8oz abcesses within my abdominal cavity.  
When a biopsy was taken, pseudomonas was the infection.  They don't know 
what caused any of it, but assumed my appendix had ruptured, poisened me, 
then healed.  I was sick as a dog for 4 weeks, but still have my 
appendix.  I don't think I injested it, though.
-Tia

On 13 Feb 1996 max@gte.net wrote:

> What types of Pesudomonads if any would cause illness when injested (via drinking 
> water)??
> 
> 
> 

From owner-pseudomonas@net.bio.net Sun Feb 25 22:00:00 1996
Path: biosci!bloom-beacon.mit.edu!newsfeed.internetmci.com!usenet.eel.ufl.edu!usenet.cis.ufl.edu!usenet.ufl.edu!usenet
From: bwr@icbr.ifas.ufl.edu (Bruce W. Ritchings)
Newsgroups: bionet.organisms.pseudomonas
Subject: Re: Methods to detect Pseudomonas aeruginosa in histological slides?
Date: Mon, 26 Feb 1996 22:14:01 GMT
Organization: University of Florida
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David Parsons <dparsons@med.unc.edu> wrote:

>Greetings again, 

>I need to quantify, or at least identify the presence of, Pseudomonas in 10% neutral 
>bufferred fomalin fixed histological slides (standard light  microscopy).  I am 
>taking sections from the decalcified (formic acid in formalin) mouse nose; the usual 
>bacteriological grind-and plate-approach is not workable due to frequent overgrowths 
>and inabilitiy to reliable define where exactly the bacteria came from in the nose. 
> 
>I have used the Brown-Hopps stain, and that is <OK>, but hard to differentiate 
>bugs from all the other nasal junk in the sections of the nose, and quantitation 
>would be a nightmare;  I wonder if there is a more specific stain - and antibody, a 
>flourescent method, or anything else, that I could use in these sections.  Or can I 
>tag these Pseudomonas before they go into the nose with something that will last 
>over several days? 

>Classical solid science,  as well 'as wild-and-crazy' suggestions welcome.  

>Thanks pseudo-persons! 

>Dr David Parsons
>UNC@ Chapel Hill
>Dept of Medicine

Hello David,
	So that's what we are, not real persons but pseudo-ones!? Nevermind,
put the following in the "wild and crazy" list of suggestions to solve
your problem: Our flow cytometry core lab at the University of Florida
is doing alot with GFP (and it's red-shift variant, RSGFP), and they
report that it is "stable after fixation with formaldehyde." This MAY
mean that it'll be stable in your 10% neutral buffered formalin--worth
investigating, at least. You'd have to put the gene for GFP into your
Pseudomonas, I'd assume on a plasmid, but you might be able to get a
stable integration in the chromosome. In either case, your Pseudomonas
should light up beautifully, assuming you can excite them (can this be
done on a slide?) at 488 nm and detected at 533 nm. Like I said, wild
and crazy, but if it works, it would certainly light up your results!
Best of luck, Bruce Ritchings, University of Florida




From owner-pseudomonas@net.bio.net Sun Feb 25 22:00:00 1996
Newsgroups: bionet.organisms.pseudomonas
Path: biosci!agate!ihnp4.ucsd.edu!swrinde!newsfeed.internetmci.com!in1.uu.net!news2.new-york.net!not-for-mail
From: Steve Grenard <grenard@herpmed.com>
Subject: Re: Pseudo in water--illness??
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Pseudomonas aeruginsa. 

-- 
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Steve Grenard
e-mail: grenard@herpmed.com

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From owner-pseudomonas@net.bio.net Sun Feb 25 22:00:00 1996
Path: biosci!bloom-beacon.mit.edu!newsfeed.internetmci.com!usenet.eel.ufl.edu!usenet.cis.ufl.edu!usenet.ufl.edu!usenet
From: bwr@icbr.ifas.ufl.edu (Bruce W. Ritchings)
Newsgroups: bionet.organisms.pseudomonas
Subject: Re: Pseudo in water--illness??
Date: Mon, 26 Feb 1996 22:26:44 GMT
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Tia McMillen <tmcmille@u.washington.edu> wrote:

>I don't know much about pseudomonas, but in 1988 I was taken to the 
>hospital and diagnosed with 2, 8oz abcesses within my abdominal cavity.  
>When a biopsy was taken, pseudomonas was the infection.  They don't know 
>what caused any of it, but assumed my appendix had ruptured, poisened me, 
>then healed.  I was sick as a dog for 4 weeks, but still have my 
>appendix.  I don't think I injested it, though.
>-Tia

>On 13 Feb 1996 max@gte.net wrote:

>> What types of Pesudomonads if any would cause illness when injested (via drinking 
>> water)??
>> 
>>
>> 
Hello Tia,
	My boss, Dr. Ramphal at University of Florida, says that there is no
proof that any of the Pseudomonads cause infection when injested,
neither diarrhea nor invasive infections. However, he says, Aeromonads
are a different story--they may cause such infections. Sincerely,
Bruce Ritchings


From owner-pseudomonas@net.bio.net Tue Feb 27 22:00:00 1996
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From: chend@ucs.orst.edu (Don Chen)
Newsgroups: bionet.organisms.pseudomonas
Subject: Ps fluorescens biovars-2nd try
Date: Tue, 27 Feb 1996 06:43:16 GMT
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I'm reposting this because I don't know if the first attempt made it
through.

Hi:

I have read that there are five biovars of Ps. fluorescens, but they
are not described.  Does anyone what are the type strains and where
they can be obtained (eg ATCC?)?  Is there specific references for
these strains which are published and available.  I wish to use them
as reference to soil pseudomonads which I am trying to characterize.

Thanks for any help you can offer.

Don


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Don Chen            *  Standard disclaimers apply here.
USDA-ARS-NFSPRC     *
3450 SW Campus Way  *   
Corvallis, OR 97331 *
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