From BIOSCI-REQUEST  Wed Nov  6 23:37:44 1996
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Message-ID: <32819255.2554@ix.netcom.com>
Date: Thu, 07 Nov 1996 01:40:05 -0600
From: Michael Ravnitzky <MikeRav@ix.netcom.com>
Reply-To: MikeRav@ix.netcom.com
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To: rna@net.bio.net
Subject: get a list of military technical reports on RNA and related topics
X-URL: http://www.bio.net/hypermail/RNA/
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I thought you might find this an interesting government information 
resource, on subject[s] you or your associates are interested in.  If 
not, I apologize.  Could you forward it on to the right person?

At a government agency called DTIC: Defense Technical Information 
Center, there are a large number of government technical reports on 
almost any subject under the sun.

NOTE:  Donıt bother using the DTIC web site--in a nutshell, itıs 
worthless and omits the bulk of the two million technical reports in the 
DTIC collection.  Send a letter--youıll get much better results.

You'll have to select your own keywords for the exact subjects youıre 
interested in.  I suggest you select no more than ten keywords or less 
for each letter.  Please select your keyword[s] carefully and include 
plural[s] like I just did.  Put an *OR* between each keyword or subject 
term.

The fee is likely to be free or only a few bucks.  You probably want to 
include a statement in the letter such as *I agree to pay reasonable 
fees associated with this request.  Please notify me if the cost will 
exceed $30.*,  so that they won't delay the processing of the request.  
Remember, they will try to dissuade you from asking for such a list.  If 
they send you a letter, and you donıt respond, they will withdraw your 
request and you wonıt get your information.  

To get your bibliography [list of technical reports],  send a letter of 
request as follows:

To:      Defense Technical Information Center
            Attn:  DTIC-RSM [Kelly D. Akers, FOIA Manager]
            8725 John J. Kingman Road, Suite 0944
            Fort Belvoir, VA  22060-6128  USA
Phone:  703-767-9194

Dear Ms. Akers:

I request the following records under the provisions of the Freedom of 
Information Act:

A computer generated technical report bibliography [for all computerized 
index years] of reports on the subject[s]/keyword[s] of:

________________  OR   _________________  OR  ________________  OR 

 _______________   OR   _________________  OR   _______________

This is a request for DTIC records, please don't forward my request to 
NTIS.  Please include both classified and unclassified records in your 
search.  If any of the records are classified, please review them for 
release, or the release of nonsensitive portions.

I am an individual, noncommercial requester and this request is not 
being made for commercial purposes.  [OR YOU MIGHT INSTEAD INDICATE IF 
YOU ARE A COMMERCIAL REQUESTER, OR AN EDUCATIONAL OR SCIENTIFIC 
INSTITUTION, OR A REPRESENTATIVE OF THE MEDIA]  I also agree to pay up 
to $35 for reasonable fees associated with this request.

Sincerely,        ______________

From BIOSCI-REQUEST  Thu Nov  7 20:42:59 1996
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Date: Thu, 7 Nov 1996 16:33:17 -0700
From: scistra@cs.sandia.gov (Sorin C. Istrail)
Message-Id: <199611072333.QAA14988@frodo2.cs.sandia.gov>
To: rna@net.bio.net
Subject: RECOMB97: Hotel Reservation and Registration Information



Please call the ElDorado hotel and make your reservation AS SOON
AS POSSIBLE. This is a four-star and four-diamond hotel and we have 
a limited number of rooms avaiblable. ElDorado will direct the 
overflow to another hotel.



FIRST ANNUAL INTERNATIONAL CONFERENCE ON
      COMPUTATIONAL MOLECULAR BIOLOGY

                RECOMB 97
      http://www.cs.sandia.gov/recomb97

           January 20-23, 1997                     
             Eldorado Hotel
           Santa Fe, New Mexico
                     
              Sponsored by        
                 SIGACT

            with support from        
            SLOAN Foundation 
          US Department of Energy





ELDORADO HOTEL RESERVATIONS INFORMATION

**** A four-star, four diamond-hotel ****

Phones:

  1-800 955-4455
  505-988-4455

Fax:

  505-995-4544
  (reservations only)

Webpage:

  http://www.eldoradohotel.com

Email:
 
  rez@eldoradohotel.com

Room Rates:

 Single/double $85 

  Sunday(1/19), Monday(1/20), Tuesday(1/21), 
  Wednesday(1/22), Thursday(1/23), Friday(1/24)
  Saturday (1/25)


 Single/Double $135

  Saturday(1/18)

(For comparison, if reservations are not made at the 
RECOMB97 group rate, the average single/double rate would be $144 
for these types of rooms.)




RECOMB97 REGISTRATION INFORMATION

A registration form can be obtained from the conference web page
http://www.cs.sandia.gov/recomb97

Advanced Registration

  ACM Member     Non-ACM Member
  $285           $360

Late/On-site Registration (After December 12)

  ACM Member     Non-ACM Member
  $360           $435

Full time student

  Advanced Registration                         $160
  Late/On-site Registration (After Decemebr 12) $210

Registration fee includes: one copy of the proceedings,
four lunches, eight coffee breaks, and a banquet ticket.
Student registration fee includes all of the above except
the banquet ticket.

For more information check out the conference web page
http://www.cs.sandia.gov/recomb97

or contact

  Sorin Istrail
  RECOMB97 Conference Chair
  Sandia National Laboratories                     
  Massively Parallel Computing Research Laboratory 
  MS 1110                                          
  Albuquerque, NM 87185-1110                       

  Phone: (505) 845-7612                            
  Fax  : (505) 845-7442                            
  Secretary: (505) 845-7432
  Email: scistra@cs.sandia.gov                     
  www  : http://www.cs.sandia.gov/~scistra         

From BIOSCI-REQUEST  Sat Nov  9 02:00:25 1996
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Date: Sat, 9 Nov 1996 02:00:11 -0800
From: BIOSCI Administrator <biohelp>
Message-Id: <199611091000.CAA03410@net.bio.net>
To: rna@net.bio.net
Subject: BIOSCI/bionet miniFAQ & Fundraiser

(LAST REVISION: 30-JUL-95)

This BIOSCI "miniFAQ" is designed to answer the questions that come up
the *most frequently*.  The main BIOSCI FAQ (Frequently Asked
Questions) is accessible on the World Wide Web at URL
http://www.bio.net/.

If you can not find an answer to your question in this or other
documentation, the BIOSCI technical support staff answers e-mail
queries sent to

		       biosci-help@net.bio.net

We can only answer questions about the use of the newsgroups and
mailing lists.  We unfortunately do not have the staff to do Internet
information searches or answer scientific questions.  Please post
those to the appropriate BIOSCI/bionet newsgroups.


	Contents:
	--------
	0) BIOSCI NEEDS YOUR SUPPORT!!

	1) Using the WWW to access the BIOSCI/bionet newsgroups.

	2) What to do about "spams," i.e., junk mail, ads, etc.

	3) Examples of subscribing and unsubscribing to the mailing lists.

	4) The BIOSCI user address and research interest directory.


0) BIOSCI NEEDS YOUR SUPPORT!!
------------------------------
BIOSCI's government funding has been expended, and we are now
operating solely from advertising revenue that we have raised from our
Web site at http://www.bio.net/.  We need just a few minutes of your
time to help us serve you.

You can do two important things which will take very little time for
you individually and will immensely help us continue to help you.

First, please use our WWW system at http://www.bio.net/ to access the
archives.  You can post or reply to messages via your Web browser as
described in item #1 below.  Your usage helps attract sponsors. If you
contact any of our sponsors, please be sure to thank them for
supporting BIOSCI. It is critical for them to get this feedback if
they are to continue their sponsorship for the long term.

Second, if you work for a company or organization that provides
products or services of interest to the biology community, please pass
this message on to your marketing or marketing communications
department or other appropriate group.  Please ask them to help
support BIOSCI by sponsoring our Web site and explain the uses and
benefits of the system to the biology community. If they are
interested, they can then contact us for further information at our
tech support address, biosci-help@net.bio.net.


1) Using the WWW to access the BIOSCI/bionet newsgroups.
--------------------------------------------------------
As of 10 December 1995, all BIOSCI/bionet full newsgroups are
accessible through the World Wide Web (WWW) at URL http://www.bio.net.
One can read and reply publicly or privately to both recent postings
and archived messages through one's Web browser if it is configured
properly to send e-mail.  Each newsgroup is equipped with its own WAIS
index.  The main BIOSCI home page also has access to the BIO-JOURNALS
Table of Contents database WAIS index and the BIOSCI user address
database described in another item further below.


2) What to do about "spams," i.e., junk mail, ads, etc.
-------------------------------------------------------
BIOSCI is a set of parallel USENET newsgroups (the "bionet" groups),
mailing lists, and a hypermail archive at URL http://www.bio.net/.
The same postings are distributed on all media (except for a small
number of mailing-list-only groups at net.bio.net).  Unfortunately it
is becoming a despicable practice on the Internet (by a few people out
to make a fast buck) to do automated mass postings to thousands of
newsgroups and mailing lists.  These attempts to grab free advertising
are refered to as "spams" in the usual, somewhat boneheaded, net
terminology.  USENET is more susceptible to this practice, and many
spams originate on the USENET groups and then are passed on to the
mailing lists.  However, spammers also get lists of mailing addresses
and hit these too, so neither medium is immune.

What should you do personally if you get junk mail?
---------------------------------------------------
Just delete it and move on without reading it further.  Filing a
protest is becoming increasingly useless because spammers are often
disguising the addresses where the messages are sent from.  Unless you
really understand Internet mail systems, your attempt at protest by
sending replies to the message will often end up being sent to the
address of an innocent person that the spammer is victimizing.

What can BIOSCI/bionet do to protect its newsgroups?
----------------------------------------------------
The only solution currently available is to moderate the newsgroup.
If this newsgroup is already moderated, then you are in good shape.
Moderation protects the USENET distribution from about 95% of the
spams that are being sent to date and protects the mailing lists
completely.  Moderation means, however, that someone has to take the
time to review each message before it goes out.  We have set up
software here that simply allows the moderator to forward to an
address at net.bio.net messages that (s)he wishes to have distributed.
This takes no more time than that needed to read the message and pass
it on, say about 1 min. per message.

Most newsgroups currently have a discussion leader who is responsible
for their newsgroup.  The discussions leaders and their e-mail
addresses are listed in the BIOSCI Information Sheet which is
available on the Web at http://www.bio.net/.  If a newsgroup is being
hit with too many junk postings, please contact the discussion leader
for that group and see if there is interest in moderating the group.
Please do not assume that by simply posting a complaint to the
newsgroup itself, anyone on the BIOSCI staff will act on your
complaint.  With close to 100 newsgroups to run, the BIOSCI staff has
to rely on the discussion leaders of each newsgroup to report problems
directly to us at biosci-help@net.bio.net.

We will moderate any of our newsgroups if the discussion leader tells
us that the readership of the group wishes to do so and if a moderator
is willing to do the work.  For most BIOSCI/bionet groups, this
entails only a few minutes of work each day.

Moderating a newsgroup will resolve probably 95% of the junk postings
on the USENET distribution.  Unfortunately there are easy ways for
determined spammers to override the moderation mechanism on USENET,
but we can protect our e-mail subscribers from unwanted postings if
the newsgroup is moderated.  You can also access our newsgroups over
the WWW at URL http://www.bio.net.  While this Web interface will not
stop spammers from trying to post to the groups, this will give you
yet another way, besides using USENET news, to keep the junk out of
your personal mail files.  For those of you with local USENET news
systems, the Web interface will also give you faster access to new
newsgroups and recent postings.


3) Examples of subscribing and unsubscribing to the mailing lists.
------------------------------------------------------------------
PLEASE NOTE: The BIOSCI management does NOT act on
subscription/unsubscription requests that are posted improperly to the
newsgroups and mailing lists.  People who do this only bother everyone
on the lists to no avail.  Please be sure to follow the proper
procedures below.

Gory details are in the BIOSCI Information sheets on the Web at
http://www.bio.net.  Below we give an example utilizing the
METHODS-AND-REAGENTS list at both of our two BIOSCI sites:

Users in the Americas and Pacific Rim countries who use the BIOSCI
------------------------------------------------------------------
node at computer net.bio.net:
----------------------------

A) Determine the "listname" which is the <=8 character mail address
                                         ^^^^^^^^^^^^^
   for the group.  These can be found in the BIOSCI Info. Sheet.  For
   the METHODS-AND-REAGENTS group the mailing address is
   methods@net.bio.net.  The listname is the portion of the address to
   the left of the @ sign, i.e., "methods".  The listname is used with
   the "subscribe" and "unsubscribe" commands illustrated below.

B) Mail all commands in the body of a mail message addressed to
   biosci-server@net.bio.net.  Do NOT send commands to the newsgroup
   posting addresses!  Leave the Subject: line blank, any text on it
   will be ignored.

C) In the body of your message put one or more of the following
   commands with an "end" command on the last line, e.g.,

   subscribe methods
   unsubscribe methods
   end

   Do NOT put your e-mail address or other text on these lines.  The
   server only allows you to cancel your subscription if the address
   on your mail header matches the address on our mailing list.
   Please ask for help at biosci-help@net.bio.net if your address has
   changed, e.g., if you know you are on the list but the server tells
   you that you are not a member.


Users in Europe, Africa, and Central Asia who use the BIOSCI node at
--------------------------------------------------------------------
computer daresbury.ac.uk (also known as dl.ac.uk):
-------------------------------------------------

To subscribe and unsubscribe to/from the BIOSCI lists, you need to
specify the full USENET newsgroup name with "bionet-news." prepended.
The USENET newsgroup names are listed in the BIOSCI Information sheet
on the Web at http://www.bio.net/.  For the METHODS-AND-REAGENTS list
the USENET newsgroup name is bionet.molbio.methds-reagnts, thus the
appropriate commands are

    sub bionet-news.bionet.molbio.methds-reagnts

    unsub bionet-news.bionet.molbio.methds-reagnts

These commands are included in a message addressed to mxt@dl.ac.uk,
NOT to the newsgroup mailing addresses.  As usual, include the text in
the body of the message as text on the Subject: line is ignored.

To unsubscribe from all the lists at the UK node, use

    unsub bionet-news

Please note that if the address in the list is different than the one
in your mail message header, you will not be able to unsubscribe by
this method. If you have problems, please mail biosci@daresbury.ac.uk.


4) The BIOSCI user address and research interest directory.
-----------------------------------------------------------
Please take this opportunity to add your name, address, and research
interest information to the BIOSCI User Address Database if you have
not already done so.

You can fill out the address form directly through our Web page at URL
http://www.bio.net/adrform.html.

The address database is reindexed nightly for WWW access (the URL is
http://www.bio.net/).  If you are not directly on the Internet but can
reach it by e-mail, please use our waismail server to access the user
directory.  waismail use is described above.  You can also request a
user address form by e-mail from biosci-help@net.bio.net.

Please check your database entry from time-to-time to see if your
address information is still up-to-date.  Because of our limited
personnel resources, we ask that you resubmit a *complete* form to
revise your entry; we only replace complete entries and do not have
resources to edit old forms.

				Sincerely,

				Dave Kristofferson
				BIOSCI/bionet Manager

				biosci-help@net.bio.net

From BIOSCI-REQUEST  Tue Nov 12 18:38:26 1996
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	id CAA30277; Wed, 13 Nov 1996 02:39:19 GMT (from mcpheete@biocserver.bioc.cwru.edu for <rna@net.bio.net>)
Date: Wed, 13 Nov 1996 02:39:19 GMT
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To: rna@net.bio.net
From: mcpheete@biocserver.bioc.cwru.edu (David S. McPheeters)
Subject: Postdoctoral position


                       November 12, 1996
    *********** POSTDOCTORAL RESEARCH OPPORTUNITY ***********

A postdoctoral research position is available immediately to study the
roles of the yeast small nuclear RNAs and their associated proteins in
nuclear pre-mRNA splicing.  We are currently taking a combined biochemical
and genetic approach to study factors involved in i) the interaction of the
yeast U2 small nuclear RNA and the pre-mRNA branch site sequence and ii)
the structural transitions in the spliceosome involving the U2 small
nuclear RNA.  Experience with molecular biology techniques is required and
persons with experience in yeast genetics are preferred.  Salary is
competitive and dependent upon qualifications.  English proficiency is also
required, as some supervision of graduate students is expected.  Please
send a curriculum vitae, a brief summary of research experience, and the
names of three references to:

                  Dr. David S. McPheeters
                  Department of Biochemistry
                  School of Medicine W432
                  Case Western Reserve University
                  Cleveland, OH  44106-4935

This research program is part of Case Western Reserve University's Center
for RNA Molecular Biology.  For more information on the Center for RNA
Molecular Biology at CWRU, visit our web site at:
http://biocserver.cwru.edu/RNA


-------------------------------------------------------------
                      David S. McPheeters
                      Assistant Professor
    Department of Biochemistry - School of Medicine W432
               Case Western Reserve University
                   Cleveland, OH  44106-4935
                 mcpheete@biocserver.bioc.cwru.edu
            (216) 368-8816       FAX (216) 368-4544
-------------------------------------------------------------



From BIOSCI-REQUEST  Tue Nov 19 18:04:26 1996
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Date: Tue, 19 Nov 96 20:06:34 -0800
From: "Anne-Marie K. Walker" <akwalker@students.wisc.edu>
Organization: UW-Madison
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To: rna@net.bio.net
Subject: LOOK HERE FOR EASY $$$$$
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1(I>(J$BAw(J


From BIOSCI-REQUEST  Thu Nov 21 02:42:27 1996
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From: "Jean Beggs" <JBEGGS@srv0.bio.ed.ac.uk>
Organization:  Edinburgh University
To: RNA@net.bio.net
Date:          Thu, 21 Nov 1996 10:42:11 +0000
Subject:       postdoc position
Priority: normal
X-mailer: Pegasus Mail for Windows (v2.01)
Message-ID: <A9F7987D55@srv0.bio.ed.ac.uk>

POSTDOCTORAL POSITION

INSTITUTE OF CELL AND MOLECULAR BIOLOGY
UNIVERSITY OF EDINBURGH,  UK

A position is available for a postdoctoral molecular biologist to 
study protein splicing factors in the yeast Saccharomyces cerevisiae 
in the laboratory of Jean Beggs. Experience in yeast genetics and 
molecular biology would be deal for this post. Expertise in the 
analysis of  nucleic acid-protein interactions would also be 
appropriate. 

This laboratory specialises in the analysis of nuclear pre-mRNA 
splicing, using a combination of genetic and biochemical 
approaches to characterise protein splicing factors and RNA-protein 
interactions (e.g. Cooper et al., 1995, EMBO J. 14:2066-2075; 
Teigelkamp et al., 1995, EMBO J.14:2602-2612). Accommodation is in 
new laboratories built and equipped to a very high standard. 

The post will be funded by the Wellcome Trust for 23 months in the 
first instance, with salary in the range stlg14,319 - stlg21,519 p.a. 
(under review; starting salary no higher than stlg18,985). 

Applications, including a full CV and details (include e-mail 
addresses) of two referees, to: 
Professor Jean D. Beggs
Institute of Cell and Molecular Biology
University of Edinburgh
King's Buildings
Mayfield Road
Edinburgh EH9 3JR
UK
Tel: 44 131 650 5351
Fax: 44 131 650 8650

From BIOSCI-REQUEST  Thu Nov 21 13:22:58 1996
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Date: Thu, 21 Nov 96 16:21:11 EST
Message-Id: <9611212121.AA08213@acc>
To: rna@net.bio.net
From: msanter@haverford.edu (Mel Santer)
Subject: SD sequences in mRNAs in E. coli

Is there an estimate of how many  mRNAs in E. coli do not have
Shine-Dalgarno sequences?


From BIOSCI-REQUEST  Fri Nov 22 01:04:00 1996
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	id KAA06415; Fri, 22 Nov 1996 10:04:03 GMT
Date: Fri, 22 Nov 1996 10:04:03 GMT
Received: from umc by apou02.akzonobel.nl via MR/VESTA with conversational-MRIF;
	Fri, 22 Nov 96 10:04:00 +0000
Posted: Fri, 22 Nov 96 10:01:17 +0000
Sender: bvgemen@am.otbc01.umc.akzonobel.nl
From: "Bob van Gemen" <bvgemen@am.otbc01.umc.akzonobel.nl>
Message-ID: <0617011022111996/A44107/OTBV05>
App-Message-ID: <0617011022111996/A44107/OTBV05/11ABB2810F00>
To: "RNA@NET.BIO.NET" <rna@net.bio.net>
Subject: RNase H recognition sites
Sensitivity: Company-Confidential

Dear RNA fans,

One of the enzymatic activities in the NASBA nucleic amplification reaction
is RNase H. The activity is associated with both the AMV-RT and E.coli 
RNase H. We were wandering if there is anybody who is knows the recognition
sites on the RNA for these two enzymes with RNase H activity? In all the
literature only very little is described about theses sites, if they exist
at all. 

Any form of help will be appreciated very much.


Bob van Gemen
Groupleader Molecular Biology
Organon Teknika
Boseind 15
5281 RM Boxtel
The Netherlands

Tel: +31-411-654480
Fax: +31-411-654427
E-mail: bvgemen@am.otbc01.umc.akzonobel.nl


