PAM and BLOSUM

Tim Littlejohn tim at megasun.BCH.UMontreal.CA
Thu Jul 14 05:40:47 EST 1994


In article <2vsd3t$iik at crcnis1.unl.edu> vwarwar at unlinfo.unl.edu (vitor warwar) writes:
>Hi:
>
>     Does anyone now where I can find, in computer readble form,
>PAM and BLOSUM tables?

These can be obtained at NCBI's ftp site:

	anonymous FTP to ncbi.nlm.nih.gov

For the blosum tables, look in the directory /repository/blocks/unix/blosum
For the PAM matricies, there is a program called "pam" which will generate the
tables for you (get pam.c and compile).  This can be found in
/pub/blast/1.4d/explode/blastapp (there are also some PAM tables already
generated; look in the matrix subdirectory).

Tim Littlejohn

-- 
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Tim Littlejohn

E-mail:     tim at bch.umontreal.ca  

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