Hi everybody
I am having trouble with column configuration of the Gmap display and am
hoping someone can tell me what stupid mistake I am making.
I have a query which works fine via the query commands window, but when
I use it to try to configure a column I get nothing displayed.
The query is
Find Chrom_Band Positive_BAC; follow Positive_BAC
The model I am using is based on the chromosome 6 model at Sanger:
?Chrom_Band Map ?Map XREF Chrom_Band #Map_position // position on
vertical maps
Display Black
Dark
NOR
Centromere // special flag for waisted drawing
p_Telomere // special flag for drawing
q_Telomere // special flag for drawing
Contains ?Chrom_Band XREF Contained_in
Contained_in ?Chrom_Band XREF Contains
Contains_breakpoint ?Hybrid XREF Breaks_in_band
Positive Positive_locus ?Locus XREF In_situ
Positive_sequence ?Sequence XREF In_situ
Positive_clone ?Clone XREF In_situ
Positive_cosmid ?Cosmid XREF In_situ
Positive_fosmid ?Fosmid XREF In_situ
Positive_YAC ?YAC XREF In_situ
Positive_BAC ?BAC XREF In_situ
Positive_PAC ?PAC XREF In_situ
Positive_STS ?STS XREF In_situ
Positive_cDNA ?cDNA XREF In_situ
Positive_probe ?Probe XREF In_situ
Positive_pool_probe ?Pool XREF In_situ
Positive_hybrid ?Hybrid XREF Chrom_band
OMIM ?OMIM XREF Chrom_Band
and In_situ is a Positive tag in the BAC class
I want to be able to enter my Positive In_situ results, and have BACs
displayed on the map according to those results. Am I not getting the
BACs displayed as I haven't specified a map position for them? My
Chrom_bands have a map position (Ends Left and Right) - shouldn't the
BAC acquire these positions via the Positive magic tag? I think there is
something fundamental I've failed to understand about mapping in ace.
thanks for any help
Janet Young
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Dr. Janet Young
Dept. Molecular Biotechnology
University of Washington tel: (206) 685 9254
Health Sciences Building fax: (206) 685 7301
PO BOX 357730 email: janety at u.washington.edu
Seattle, WA 98195, USA
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