phredphrap ACE files to ACEDB interface?
Nathan O. Siemers
nathan at dnase.hpw.pri.bms.com
Tue May 23 03:42:02 EST 2000
Forgive me for my naive questions here.
We use phred/phrap/consed for much of our in-house sequencing
projects. We have a Projects directory, where all of our
sequencing is sorted by project. Underneath these projects is
the standard consed file hierarchies (phd_dir, edit_dir, etc)
and the corresponding ace files.
Is there a simple way to load all of this information into an
acedb instance and let people browse results by project, look
at alignments, etc? Has anyone written such an integration
procedure? I would think it would be straightforward.
Thanks for any pointers you have.
N a t h a n O . S i e m e r s
Division of Applied Genomics
Bristol-Myers Squibb Pharmaceutical Research Institute
Hopewell Building 3B, P.O. Box 5400, Princeton, NJ 08543-5400
siemersn at bms.com
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