Using giface to get Protein details

Richard Durbin rd at sanger.ac.uk
Tue Feb 6 04:19:28 EST 2001


Ah.  Good question.  Unfortunately each giface command requires a little
bit of adaptor code to be written.  There isn't any yet to interface to
the pep display functionality.  Quite a lot would have to be put into
place.  Not a bad idea though.

Richard

Keith Bradnam wrote:
> 
> Using acedb 4.7l:
> 
> I've just noticed that if I use giface (and then use the 'gif' command), I
> can then use the commands 'seqget' and 'seqfeatures' to retrieve the
> homology details for the specified sequence.
> 
> But whilst there is a pepget command for fetching protein sequences, there
> is no equivalent pepfeatures command.
> 
> Any chance of this being implemented in a new version or is there some
> reason why this is hard to do?
> 
> Keith








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