Locus_genomic_seq and Locus_other_seq

Richard Durbin rd at sanger.ac.uk
Tue Oct 30 09:38:24 EST 2001


This is a WormBase specific change, which was to separate connections between
Loci and the "canonical" genomic fragments sequenced by the genome sequencing 
consortium away from those to other sequences in the public databases (EMBL/GenBank).

Richard

Marc Logghe wrote:
> 
> Hi,
> In 'old' scripts I used the Locus tag to get information about the locus
> corresponding to a gene. This tag appeared to be broken in recent releases
> of Acedb. When I looked at the class map I saw two new (?) tags:
> Locus_genomic_seq and Locus_other_seq. Can anybody tell me what the
> difference is between those 2 or show me where to find this information.
> I tried eg F08B6.4a and F08B6.4b and I only get something with
> Locus_other_seq for the b splice variant.
> Thanks
> Marc
> 
> ***********************************************************
> Marc Logghe, Ph.D.
> deVGen
> Technologiepark 9
> 9052 Zwijnaarde
> tel: +32 (0) 9 324 24 83
> fax: +32 (0) 9 324 24 25
> ***********************************************************
> 
> ---

-- 
---------------------------------------------------------------------
Richard Durbin                                      The Sanger Centre
email: rd at sanger.ac.uk                   Wellcome Trust Genome Campus
http://www.sanger.ac.uk/Users/rd/                             Hinxton
phone: 01223 494978                                Cambridge CB10 1SA
fax: 01223 494919                                                  UK
---------------------------------------------------------------------





More information about the Acedb mailing list