transition to 4_9

Tim Cutts timc at chiark.greenend.org.uk
Fri Apr 5 11:27:04 EST 2002


In article <3CA915C1.D4B58F5E at lbl.gov>,
Jody Schwartz <jrschwartz at lbl.gov> wrote:
>
>I have been using 4_8a for quite a while to do annotation, I use the
>sequence map display.  We just installed 4_9d.   This is a pretty
>specific question.  My hand-curated genes, called hand_built in methods,
>are supposed to be blue.  But only the introns are blue.  The exon boxes
>are arbitrarily purple.  Any thoughts on why this is?  (The other two
>are correctly colored.)

You need to add a CDS_colour line to the method as well (or something
like that - I don't do any ACeDB in my current job, and so I can't
access the database which I used to work on)

>By the way, if anyone was going to suggest it, unfortunately I nor
>anyone here can get 4_9f to compile on our Solaris 7 machines.

Never had any problems compiling it on Solaris 2.6.  What's the error
you get?

Tim.





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