fpc contigs in pmap display
zorngibel at web.de
Fri Jul 18 05:04:06 EST 2003
I am a little bit confused about the PMAP and GMAP displays.
I use fpc to create a physical clone map and read the ace dump of my fpc
map into acedb. The ace dump as it comes from fpc is designed in a way
that the contigs are displayed in the GMAP display. My problem is that I would
like to try to show the contigs in PMAP display, but up to now I was not able
to do so. I am not quite sure how I should change my model.wrm and how I
should edit the fpc ace dump to achieve this. Specifically, can I directly
translate the genetic map positions as in
Clone : "J19"
Map ctg1 Left 7.000
Map ctg1 Right 30.000
into a PMAP position?
And if yes, is it worth the effort, meaning is it recommendable to use the
PMAP display instead of the GMAP for fingerprint contigs?
Any hint will be very much appreciated.
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