Gapped alignments?

Mike Gibson gibson at genetics.utah.edu
Fri Mar 14 12:19:28 EST 2003


Has anyone had success getting gapped alignments as described in
http://www.acedb.org/Development/wdoc/gappedAlignments.html to show
up in blixem?  When I import them in to AceDB, the show up in the
fmap, but they don't even show up in blixem, let alone showing the
gaps.

Here's an example of the ace file I imported:

Sequence : "zmmtna"
DNA_homol "zmmtc" "testing" 0.0 694025 694088 508270 508333 Align 694025 508270
DNA_homol "zmmtc" "testing" 0.0 694025 694088 508270 508333 Align 694046 508292
DNA_homol "zmmtc" "testing" 0.0 694025 694088 508270 508333 Align 694056 508301

Sequence : "zmmtc"
DNA_homol "zmmtna" "testing" 0.0 508270 508333 694025 694088 Align 508270 694025
DNA_homol "zmmtna" "testing" 0.0 508270 508333 694025 694088 Align 508292 694046
DNA_homol "zmmtna" "testing" 0.0 508270 508333 694025 694088 Align 508301 694056

Does that look right?

Mike Gibson
gibson at genetics.utah.edu
---





More information about the Acedb mailing list