Arabidopsis splice site consensus update

Mike Cherry 726-5955 CHERRY at FRODO.MGH.HARVARD.EDU
Wed Oct 28 11:50:19 EST 1992


Splice Site Consensus Table.

Produced by ACEDB 1.8 software (Durbin and Thierry-Mieg) using the
AAtDB release 1-2 database.

Of the 410 Arabidopsis DNA sequences contained within AAtDB, 289
sequences were found to have intron-exon boundaries stated. A total of
383 introns were defined.

The "|" denotes the exon-intron boundary. The columns represent the
nucleotide position relative to the exon-intron boundary. The rows
present the total number of the different nucleotides observed in the
dataset.

5' consensus

                          --- intron --->
A   105  143  235   45  |    2    4  256  221   86  104  124
C    98  122   56   11  |    3    1   17   58   28   58   68
G    71   61   30  290  |  371    7   40   18  196   37   46
T   109   57   62   37  |    7  371   70   86   73  184  145
X     0    0    0    0  |    0    0    0    0    0    0    0


3' consensus
                      --- intron --->
A    71   79   64  127   22  368    7  |   97   82  104   99
C    53   49   41   24  225    3    2  |   48   56   56   64
G    77   65   33  136    8    8  370  |  183   73  101  123
T   182  190  245   96  128    4    4  |   55  172  122   97
X     0    0    0    0    0    0    0  |    0    0    0    0




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