RAPD Primers
Mike Cherry 726-5955
CHERRY at FRODO.MGH.HARVARD.EDU
Tue Jan 26 17:27:52 EST 1993
Last week Pablo Scolnik of DuPont mentioned that he had sent the
information on his group's RAPD markers to AAtDB. We have received
several requests for the primer sequences. Below I've included a table
which contains this information. The RI scoring data and the primers
will be incorporated into AAtDB shortly. In the future images of the
RAPD patterns will also be available. - Mike Cherry
RAPD Primer
Name Sequence Allele
========= ================ =========
rap4b TGACGATGCA W100
rap6.1 GCAAGTAGCT WS
rap6.2 GCAAGTAGCT W100
rap10 GCAAGTAGTG W100
rap12f.1 CGGTCACTGT W100
rap12f.2 CGGTCACTGT W100
rap13.1 ATTGCGTCCA W100
rap13.2 ATTGCGTCCA WS
r11 CCAAGCAGT WS
r34 GTCACCGGA W100
r38 CTAGCCGAC W100
r47 GTACGAACC WS
r78 GAGTGCCTT WS
r86 CAAGGACAC W100
r234 TGGCTCAAAG WS
r235.2 TCGAACCAAC WS
r238.1 GCATCCACCA WS
r238.2 GCATCCACCA WS
r239 GCCTTTCCAG W100
r250 TCAGACGAGG WS
r251.1 AAGGTCGCCT W100
r251.2 AAGGTCGCCT WS
r252 CGATGTTCCC WS
r255 AGGCGTGTGT WS
r257.1 TGGAGCGGAA WS
r257.2 TGGAGCGGAA WS
r266.1 AGGTGGTTCT W100
r266.2 AGGTGGTTCT W100
r268 AGCTGGCTTG W100
r269.2 CAGTGTGTGG WS
r269.3 CAGTGTGTGG WS
r276 GCCGAATTGG W100
r278.1 AGGGTTCGGT W100
r278.2 AGGGTTCGGT WS
r293 ACAGCGTCCT WS
r315.1 GCGCTACCCT WS
r315.2 GCGCTACCCT W100
r315.3 GCGCTACCCT WS
r317.1 CGCTGAGATG WS
r317.2 CGCTGAGATG WS
r330 GAAGCCTGGT WS
r338 GCTGCCACTG WS
r340 CTTAGGGCAC WS
r355.1 CATTGCGGGA W100
r355.2 CATTGCGGGA WS
r356.1 GATCCCCTGA W100
r356.2 GATCCCCTGA W100
r356.3 GATCCCCTGA W100
r356.4 GATCCCCTGA W100
r362 CGATCGACAC W100
r363.1 ACTAACGGAC WS
r363.2 ACTAACGGAC WS
r363.3 ACTAACGGAC W100
r370 GGTCTGCGAG WS
r380 AGGGTTCCGT W100
r406.1 CGACATCCGT W100
r406.2 CGACATCCGT W100
r414 TCAAGCGATG WS
r431.2 AGATCGCCAG WS
r455 GAGCCCTCAA WS
r469 TCGCAACGTC W100
r471.1 ACGGGTTAGT WS
r471.2 ACGGGTTAGT W100
r472.1 GACACCGAGT WS
r472.2 GACACCGAGT W100
r488.1 TGGACGGCAA W100
r488.2 TGGACGGCAA W100
r512 TACACGACCC W100
r513 ATTGGCGATG W100
r516.1 GAGTTCGCCC WS
r516.2 GAGTTCGCCC W100
r552 GCCAGCGTAA WS
r553 TAGAGAAGCC W100
r555 TCGATGTGGA W100
r556 AGGTGCGTCA WS
r564.1 GCCTCCTACT WS
r684.1 CGTTGCTATG W100
r687 CATCGGACCA W100
r688 TCACAGGGTC W100
r692 CATCGACGAG WS
r694 ATCCGCGTTC WS
r727 TGTAGGTCCA WS
r731 CCAGTGGTTC WS
r734 GGTTCACAAG WS
r738 CAGGCTAGAG W100
r739.1 GCTTACGAGG W100
r739.2 GCTTACGAGG WS
r748 GCCGGTTTGG WS
r751.1 GGGCACTCCG W100
r751.2 GGGCACTCCG WS
r751.3 GGGCACTCCG WS
r753 TGCGAGTCCA W100
r756.1 GTGTCAGGCA WS
r756.2 GTGTCAGGCA WS
r769.1 CCTGGTCTAC WS
r769.2 CCTGGTCTAC W100
r771 TCAGCTCACC WS
r774 TCGCATCTGT WS
r782.1 CGAGTCAACT WS
r782.2 CGAGTCAACT WS
r783 ATGTCCGCAC W100
r800.1 CTGGACCTTG WS
r800.2 CTGGACCTTG WS
r807.1 GCCTTCATCT WS
r808 TGTCCGATGG WS
r809 TTCCGTTGCC WS
r836 ACCGTGGTCA W100
r838.1 CGCAAGACAA WS
r845.2 ATTGCCCGTG WS
r849.1 AATCGTGCTC WS
r849.2 AATCGTGCTC WS
r849.3 AATCGTGCTC W100
r857.1 GATGACGGGT WS
r857.2 GATGACGGGT WS
r870 GGACACTGTT WS
r901.4 AATGCACCGT WS
r903.1 GTGTCATCCA WS
r903.2 GTGTCATCCA W100
r906 AAGGGCTGAC WS
r916.1 ATACCATCCC WS
r916.2 ATACCATCCC WS
r916.3 ATACCATCCC WS
r916.4 ATACCATCCC WS
r929.1 GTCCGCACGG WS
r929.2 GTCCGCACGG WS
r936.1 TTTCGAGCCG WS
r936.2 TTTCGAGCCG WS
r959.2 GTCTACGATG WS
r984.2 TGTTTCGAGC W100
r989.1 CAGGTCCTAA W100
r990 CCCCTGATGA W100
r993 GGATCTACCT WS
r1029 ATTCAGCAGG W100
r1032 TGTTCTGCGG W100
r1036.1 ACTCCGACCG WS
r1036.3 ACTCCGACCG WS?
r1036.4 ACTCCGACCG WS
r1059 CGTCGCTATT W100
r1078 GCCATGAATC WS
r1083.1 GCAGATGAGT W100
r1083.2 GCAGATGAGT WS
r1106 CCAAAAAGCC WS
r1107.1 CAGGTCACTT W100
r1107.2 CAGGTCACTT WS
r1107.3 CAGGTCACTT WS
r1108 AAGACCAGGG WS
r1111.1 GATAACCGCA WS
r1111.2 GATAACCGCA WS
r1114 GTCTTGGGCA W100
r1115 AAGTGCCACA W100
r1145 ACTAGGTGTC W100
r1150 GGTTTAGCTC W100
r1155.2 AGCTGAGAAG W100
r1169.1 GGAAGTGTAG W100
r1169.2 GGAAGTGTAG W100
r1177.1 CTGTAGCCAG WS
r1186 ATGGCAACGA W100
r1197 GTTGCTAGTG WS
r1203 GTCTACGATG WS
r1212 TACCATCGCC WS
r1213 TAATCGGGTG WS
r1220 CCGAAGTCAC W100
r1242 CCAACGTGCC W100
r1259 CTACCAGAAC W100
r1261.1 GTCGTTACGA W100
r1261.2 GTCGTTACGA WS
r1263.2 TGGTTAAGCC W100
r1263.3 TGGTTAAGCC WS
r1273 GCGCAACGCT WS
r1279 GTGTGGATGG W100
r1281 AACGCGCAAC W100
r1300.2 GGGACTCGGA WS
r1302.1 GGAAATCGTG W100
r1302.2 GGAAATCGTG WS
r1302.3 GGAAATCGTG W100
r1305 CAGTGCGAAG W100
r1315.1 CAATTCCACC W100
r1315.2 CAATTCCACC W100
r1325.2 CGGTAGTTGG W100
r1338 GATAGGTGCT
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