New Arabidopsis DNA 02-Aug-1997

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Sun Aug 3 00:11:25 EST 1997


====================== New DNA Sequences =======================

AB003041    AB003041     1529bp    mRNA     PLN      25-JUL-1997
    Arabidopsis thaliana mRNA for O-acetylserine (thiol) lyase, complete cds.
    cs26; O-acetylserine (thiol) lyase; cysteine synthase.

AB004568    AB004568      954bp    mRNA     PLN      29-JUL-1997
    Arabidopsis thaliana mRNA for cyanase, complete cds.
    CYN; cyanase.

AB005779    AB005779      240bp    DNA      PLN      22-JUL-1997
    Arabidopsis thaliana DNA for tRNA-Cys.
    tRNA-Cys.

AB005780    AB005780      312bp    DNA      PLN      24-JUL-1997
    Arabidopsis thaliana tRNA-Asp gene.
    tRNA-Asp.

AB005781    AB005781      312bp    DNA      PLN      24-JUL-1997
    Arabidopsis thaliana tRNA-Asp gene.
    tRNA-Asp.

AB005782    AB005782      311bp    DNA      PLN      24-JUL-1997
    Arabidopsis thaliana tRNA-Gly gene.
    tRNA-Gly.

AB005783    AB005783      311bp    DNA      PLN      24-JUL-1997
    Arabidopsis thaliana tRNA-Gly gene.
    tRNA-Gly.

AB005784    AB005784      311bp    DNA      PLN      24-JUL-1997
    Arabidopsis thaliana tRNA-Gly gene.
    tRNA-Gly.

AB005785    AB005785      311bp    DNA      PLN      24-JUL-1997
    Arabidopsis thaliana tRNA-Gly gene.
    tRNA-Gly.

AB005786    AB005786      927bp    DNA      PLN      24-JUL-1997
    Arabidopsis thaliana tRNA-Glu gene.
    tRNA-Glu.

AB005888    AB005888     1033bp    mRNA     PLN      24-JUL-1997
    Arabidopsis thaliana mRNA for ATMYB3, complete cds.
    ATMYB3; Atmyb3.

AB005889    AB005889     1364bp    mRNA     PLN      24-JUL-1997
    Arabidopsis thaliana mRNA for ATMYB4, complete cds.
    ATMYB4; Atmyb4.

AB006032    AB006032     2036bp    mRNA     PLN      31-JUL-1997
    Arabidopsis thaliana mRNA for nitrite reductase, complete cds.
    nitrite reductase.

AC002376    AC002376   101387bp    DNA      HTG      23-JUL-1997
    *** SEQUENCING IN PROGRESS *** T1G11; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002387    AC002387   132012bp    DNA      HTG      25-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F04L23'
     genomic sequence near marker 'CIC02E07'; HTGS phase 1, 5 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002388    AC002388    95000bp    DNA      HTG      28-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T13E15'
     genomic sequence near marker 'CIC02E07'; HTGS phase 1, 1 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002391    AC002391   117024bp    DNA      HTG      29-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20D16'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 4 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002392    AC002392   107350bp    DNA      HTG      29-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20K24'
     genomic sequence near marker 'CIC06E08'; HTGS phase 1, 8 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002396    AC002396   121714bp    DNA      HTG      31-JUL-1997
    *** SEQUENCING IN PROGRESS *** Genomic sequence of Arabidopsis BAC F3I6;
     HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AF003094    AF003094      729bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.1 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.1.

AF003095    AF003095     1101bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.2 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.2.

AF003096    AF003096     1055bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.3 mRNA, complete
     cds.
    AP2 domain containing protein RAP2.3.

AF003097    AF003097      969bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.4 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.4.

AF003098    AF003098      937bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.5 mRNA, complete
     cds.
    AP2 domain containing protein RAP2.5.

AF003099    AF003099      651bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.6 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.6.

AF003100    AF003100     1329bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.7 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.7.

AF003101    AF003101     1113bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.8 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.8.

AF003102    AF003102      417bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.9 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.9.

AF003103    AF003103      814bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.10 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.10.

AF003104    AF003104      933bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.11 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.11.

AF003105    AF003105     1277bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.12 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.12.

AF009631    AF009631     1662bp    mRNA     PLN      23-JUL-1997
    Arabidopsis thaliana AP47/50p mRNA, complete cds.
    AP47/50p.

AF009647    AF009647     2448bp    mRNA     PLN      23-JUL-1997
    Arabidopsis thaliana arginine decarboxylase (spe2) mRNA, complete cds.
    spe2; arginine decarboxylase.

ATCHLGPX1   AJ000469      962bp    RNA      PLN      22-JUL-1997
    Arabidopsis thaliana chloroplast mRNA for glutathione peroxidase.
    chloroplast; glutathione peroxidase; GPX1 gene; GPX1.

ATCKS1SUC   AJ000016      455bp    RNA      PLN      22-JUL-1997
    Arabidopsis thaliana mRNA for Cks1/Suc1 protein homologue.
    CKS1 gene; Cks1 protein; SUC1 gene; cks1.

ATCYTGPX2   AJ000470      739bp    RNA      PLN      22-JUL-1997
    Arabidopsis thaliana mRNA for cytosolic glutathione peroxidase.
    cytosolic; glutathione peroxidase; Gpx2 gene; GPX2.

ATEIF4E     Y10548      910bp    RNA      PLN      30-JUL-1997
    A.thaliana mRNA for eIF4E protein.
    eIF4E protein; EIF4E1.

ATEIF4EIS   Y10547      812bp    RNA      PLN      30-JUL-1997
    A.thaliana mRNA for eIF4Eiso protein.
    eIF4Eiso protein; EIF4E2.

ATSBE21     AJ000497     7020bp    DNA      PLN      22-JUL-1997
    Arabidopsis thaliana Sbe2.1 gene.
    Sbe2.1 gene; starch branching enzyme II; Sbe2.1; Starch branching enzyme
     II.

ATU72155    U72155     3781bp    DNA      PLN      31-JUL-1997
    Arabidopsis thaliana beta-glucosidase (psr3.2) gene, complete cds.
    psr3.2; beta-glucosidase.

ATU77381    U77381      984bp    mRNA     PLN      01-AUG-1997
    Arabidopsis thaliana WD-40 repeat protein (AtArcA) mRNA, complete cds.
    AtArcA; WD-40 repeat protein.

ATU83619    U83619     3702bp    DNA      PLN      26-JUL-1997
    Arabidopsis thaliana putative pectate lyase (At59) gene, complete cds.
    At59; putative pectate lyase.

ATU83620    U83620      543bp    DNA      PLN      26-JUL-1997
    Arabidopsis thaliana putative pectate lyase (A1) gene, partial cds.
    A1; putative pectate lyase.

ATU83621    U83621      770bp    DNA      PLN      26-JUL-1997
    Arabidopsis thaliana putative pectate lyase (A10) gene, partial cds.
    A10; putative pectate lyase.

ATU83622    U83622      851bp    DNA      PLN      26-JUL-1997
    Arabidopsis thaliana putative pectate lyase (A11) gene, partial cds.
    A11; putative pectate lyase.

ATY14325    Y14325     1694bp    RNA      PLN      30-JUL-1997
    Arabidopsis thaliana mRNA for mevalonate diphosphate decarboxylase.
    mevalonate diphosphate decarboxylase; MVD1 gene; MVD1.

D89631      D89631     2045bp    mRNA     PLN      29-JUL-1997
    Arabidopsis thaliana mRNA for sulfate transporter, complete cds.
    ATST1; sulfate transporter.

HSCOP1012   AJ000536      494bp    DNA      PLN      28-JUL-1997
    Arabidopsis thaliana COP1 gene, exons 10 to 12.
    cop1 gene; exon; COP1; COP1 protein.

HSCOP157    AJ000535      768bp    DNA      PLN      28-JUL-1997
    Arabidopsis thaliana COP1 gene, exons 5 to 7.
    cop1 gene; exon; COP1; COP1 protein.

==================== Updated DNA Sequences =====================

AC002304    AC002304   106256bp    DNA      HTG      28-JUL-1997
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F14J16; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002332    AC002332   161002bp    DNA      HTG      31-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F04P09'
     genomic sequence near marker 've015'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC002335  AC002335   102057bp    DNA      PLN      31-JUL-1997
    Arabidopsis thaliana chromosome II BAC T01O24 genomic sequence, complete
     sequence.
    HTG; T01O24.1; MYB transcription factor isolog; T01O24.2; T01O24.3;
     calcium binding protein isolog; T01O24.4; tRNA-Thr; T01O24.5; T01O24.6;
     T01O24.7; membrane transporter D1 isolog; T01O24.8; T01O24.9;
     glutathione perosidase isolog; T01O24.10; biotin synthase (Bio B);
     T01O24.11; small nuclear ribonucleoprotein isolog; T01O24.12; T01O24.13;
     T01O24.14; electron transfer flavoprotein ubiquinone oxidoreductase
     isolog; T01O24.15; T01O24.16; putative 3-beta hydroxy-5-ene steriod
     dehydrogenase isolog; T01O24.17; glyoxalase II isolog; T01O24.18;
     T01O24.19; T01O24.20; ribosomal protein L38 isolog; T01O24.21;
     T01O24.22; peroxidase isolog; T01O24.23; T01O24.24; T01O24.25; trypsin
     inhibitor isolog; T01O24.26; T01O24.27; trypsin inhibitor 2 precursor
     isolog; T01O24.28; T01O24.29; T01O24.30; FKBP type peptidyl-prolyl
     cis-trans isomerase isolog; T01O24.31; endochitinase isolog; T01O24.32;
     T01O24.33; T01O24.34.

AC002338    AC002338    86892bp    DNA      HTG      25-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T09D09'
     genomic sequence near marker 'm283'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC002339    AC002339    91071bp    DNA      HTG      30-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T11A07'
     genomic sequence near marker 'CIC11C08'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002341    AC002341    88727bp    DNA      HTG      31-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T14G11'
     genomic sequence near marker 'TEn5'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

=========== Updated Sequence Features/Annotations  =============

ATAC000098  AC000098   285516bp    DNA      HTG      04-APR-1997
    *** SEQUENCING IN PROGRESS *** YUP8H12; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

ATAC000107  AC000107    95962bp    DNA      HTG      24-APR-1997
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F17F8; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC001645  AC001645    91714bp    DNA      PLN      22-JUL-1997
    Arabidopsis thaliana chromosome III BAC T02O04 genomic sequence, complete
     sequence.
    HTG; T02O04.1; T02O04.2; mitochondrial processing peptidase alpha subunit
     precusor isolog; T02O04.3; jasmonate inducible protein isolog; T02O04.4;
     T02O04.5; T02O04.6; T02O04.7; T02O04.8; T02O04.9; T02O04.10; T02O04.11;
     T02O04.12; T02O04.13; poly(A)-binding protein isolog; T02O04.14;
     Proline-rich protein APG isolog; T02O04.15; T02O04.16; Myb-related
     transcription activator (MybSt1) isolog; T02O04.17; ABC transporter
     (PDR5-like) isolog; T02O04.18; T02O04.19; DNA binding protein (CDC27SH)
     isolog; T02O04.20; T02O04.21; cell division protein FtsH isolog;
     T02O04.22; transcription factor (TINY) isolog; T02O04.23.

ATCM4GENE   X90382     1303bp    RNA      PLN      23-JUL-1997
    A.thaliana DNA for cM4 gene.
    cM4 gene; myb-repeat; cM4.

ATCY13GEN   X90387     1547bp    RNA      PLN      23-JUL-1997
    A.thaliana DNA for cY13 gene.
    cY13 gene; myb-repeat; cY13.

ATHMGIYPR   X99116      903bp    RNA      PLN      29-JUL-1997
    A.thaliana mRNA for HMG-I/Y protein.
    HMG-I/Y protein.

ATM1GENE    X90379     2579bp    DNA      PLN      23-JUL-1997
    A.thaliana DNA for M1 gene.
    M1 gene; myb-repeat; M1.

ATM2GENE    X90380     3127bp    DNA      PLN      23-JUL-1997
    A.thaliana DNA for M2 gene.
    M2 gene; myb-repeat; M2.

ATM4GENE    X90381     2841bp    DNA      PLN      23-JUL-1997
    A.thaliana DNA for M4 gene.
    M4 gene; myb-repeat; M4.

ATTYKYRNA   X84318      935bp    RNA      PLN      30-JUL-1997
    A.thaliana TYKY mRNA for NADH:ubiquinone oxidoreductase.
    TYKY; complex I; NADH dehydrogenase; NADH ubiquinone oxidoreductase;
     TYKY; NADH:ubiquinone oxidoreductase (complex I).

ATU84973    U84973     1377bp    mRNA     PLN      26-JUL-1997
    Arabidopsis thaliana GUT15 mRNA, complete cds.
    GUT15.

ATY13GENE   X90383     1520bp    DNA      PLN      23-JUL-1997
    A.thaliana DNA for Y13 gene.
    myb-repeat; Y13 gene; Y13.

ATY19GENE   X90384     2973bp    DNA      PLN      23-JUL-1997
    A.thaliana DNA for Y19 gene.
    myb-repeat; Y19 gene; Y19.

ATY49GENE   X90385     2471bp    DNA      PLN      23-JUL-1997
    A.thaliana DNA for Y49 gene.
    myb-repeat; Y49 gene; Y49.

ATY53GENE   X90386     1866bp    DNA      PLN      23-JUL-1997
    A.thaliana DNA for Y53 gene.
    myb-repeat; Y53 gene; Y53.

D86608      D86608     5796bp    DNA      PLN      29-JUL-1997
    Arabidopsis thaliana DNA for inorganic phosphate transporter, complete
     cds.
    PHT1; inorganic phosphate transporter.

D86932      D86932     1619bp    DNA      PLN      22-JUL-1997
    Arabidopsis thaliana DNA for terminal flower1, complete cds.
    terminal flower1.


To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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