New Arabidopsis DNA 23-Aug-1997

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Mon Aug 25 11:16:11 EST 1997


====================== New DNA Sequences =======================

AB000796    AB000796     2155bp    mRNA     PLN      22-AUG-1997
    Arabidopsis thaliana mRNA for NPK1-related protein kinase 1L, partial
     cds.
    ANP1; NPK1-related protein kinase 1L.

AB000797    AB000797     2073bp    mRNA     PLN      22-AUG-1997
    Arabidopsis thaliana mRNA for NPK1-related protein kinase 1S, complete
     cds.
    ANP1; NPK1-related protein kinase 1S.

AB000798    AB000798     2193bp    mRNA     PLN      22-AUG-1997
    Arabidopsis thaliana mRNA for NPK1-related protein kinase 2, partial cds.
    ANP2; NPK1-related protein kinase 2.

AB000799    AB000799     2157bp    mRNA     PLN      22-AUG-1997
    Arabidopsis thaliana mRNA for NPK1-related protein kinase 3, complete
     cds.
    ANP3; NPK1-related protein kinase 3.

AB006054    AB006054     1800bp    DNA      PLN      21-AUG-1997
    Arabidopsis thaliana gene for acidic endochiotinase, complete cds,
     isolate:Aa-0.
    acidic endochiotinase.

AB006055    AB006055     1800bp    DNA      PLN      21-AUG-1997
    Arabidopsis thaliana gene for acidic endochiotinase, complete cds,
     isolate:Bs-1.
    acidic endochiotinase.

AB006056    AB006056     1800bp    DNA      PLN      21-AUG-1997
    Arabidopsis thaliana gene for acidic endochiotinase, complete cds,
     isolate:Gr-1.
    acidic endochiotinase.

AB006057    AB006057     1800bp    DNA      PLN      21-AUG-1997
    Arabidopsis thaliana gene for acidic endochiotinase, complete cds,
     isolate:Hiroshima.
    acidic endochiotinase.

AB006058    AB006058     1800bp    DNA      PLN      21-AUG-1997
    Arabidopsis thaliana gene for acidic endochiotinase, complete cds,
     isolate:Es-0.
    acidic endochiotinase.

AB006059    AB006059     1800bp    DNA      PLN      21-AUG-1997
    Arabidopsis thaliana gene for acidic endochiotinase, complete cds,
     isolate:Al-0.
    acidic endochiotinase.

AB006060    AB006060     1801bp    DNA      PLN      22-AUG-1997
    Arabidopsis thaliana gene for acidic endochiotinase, complete cds,
     isolate:Chi-0.
    acidic endochiotinase.

AB006061    AB006061     1779bp    DNA      PLN      21-AUG-1997
    Arabidopsis thaliana gene for acidic endochiotinase, complete cds,
     isolate:Bl-1.
    acidic endochiotinase.

AB006062    AB006062     1800bp    DNA      PLN      22-AUG-1997
    Arabidopsis thaliana gene for acidic endochiotinase, complete cds,
     isolate:Mt-0.
    acidic endochiotinase.

AB006063    AB006063     1799bp    DNA      PLN      22-AUG-1997
    Arabidopsis thaliana gene for acidic endochiotinase, complete cds,
     isolate:Shokei.
    acidic endochiotinase.

AB006064    AB006064     1801bp    DNA      PLN      22-AUG-1997
    Arabidopsis thaliana gene for acidic endochiotinase, complete cds,
     isolate:Yo-0.
    acidic endochiotinase.

AB006065    AB006065     1792bp    DNA      PLN      22-AUG-1997
    Arabidopsis thaliana gene for acidic endochiotinase, complete cds,
     isolate:Bla-10.
    acidic endochiotinase.

AB006066    AB006066     1791bp    DNA      PLN      22-AUG-1997
    Arabidopsis thaliana gene for acidic endochiotinase, complete cds,
     isolate:Kn-0.
    acidic endochiotinase.

AB006067    AB006067     1790bp    DNA      PLN      22-AUG-1997
    Arabidopsis thaliana gene for acidic endochiotinase, complete cds,
     isolate:Ci-0.
    acidic endochiotinase.

AB006068    AB006068     1782bp    DNA      PLN      22-AUG-1997
    Arabidopsis thaliana gene for acidic endochiotinase, complete cds,
     isolate:Ita-0.
    acidic endochiotinase.

AB006069    AB006069     1781bp    DNA      PLN      22-AUG-1997
    Arabidopsis thaliana gene for acidic endochiotinase, complete cds,
     isolate:Pog-0.
    acidic endochiotinase.

AF008124    AF008124     5151bp    mRNA     PLN      22-AUG-1997
    Arabidopsis thaliana glutathione S-conjugate transporting ATPase (AtMRP1)
     mRNA, complete cds.
    AtMRP1; glutathione S-conjugate transporting ATPase.

AF013465    AF013465     3099bp    DNA      PLN      20-AUG-1997
    Arabidopsis thaliana bHLH protein (Atmyc-146) gene, complete cds.
    Atmyc-146; bHLH protein.

AF013959    AF013959     2217bp    DNA      PLN      21-AUG-1997
    Arabidopsis thaliana metallothionein-like protein (MT3) gene, complete
     cds.
    MT3; metallothionein-like protein.

ATDDDRP     Y08722     9080bp    DNA      PLN      15-AUG-1997
    Arabidopsis thaliana rpoZ gene.
    DNA-dependent RNA polymerase; rpoZ gene; rpoZ; chloroplast single-subunit
     DNA-dependent RNA polymerase.

ATDDRNPOL   Y14589     1199bp    DNA      PLN      15-AUG-1997
    Arabidopsis thaliana gene encoding DNA-directed RNA polymerase, exon 1.
    DNA-directed RNA polymerase.

ATHATL2A    L76926     1540bp    DNA      PLN      14-JAN-1997
    Arabidopsis thaliana zinc-finger protein gene, complete cds.
    zinc-finger protein; zinc finger protein.

ATMDDRP     Y08463     3482bp    RNA      PLN      15-AUG-1997
    Arabidopsis thaliana mRNA for chloroplast single-subunit DNA-dependent
     RNA polymerase.
    DNA-dependent RNA polymerase; rpoZ gene; rpoZ; chloroplast single-subunit
     DNA-dependent RNA polymerase.

ATRGA1      Y11336     2210bp    RNA      PLN      19-AUG-1997
    A.thaliana mRNA for RGA1 gene.
    RGA1 gene; RGA1; RGA1 protein.

ATRGA2      Y11337     1951bp    RNA      PLN      19-AUG-1997
    A.thaliana mRNA for RGA2 gene.
    RGA2 gene; RGA2; RGA2 protein.

ATT3T7POL   Y09006     9208bp    DNA      PLN      15-AUG-1997
    Arabidopsis thaliana rpoY gene.
    DNA-dependent RNA polymerase; rpoY gene; rpoY; mitochondrial
     single-subunit DNA-dependent RNA polymerase.

ATU62044    U62044      812bp    mRNA     PLN      20-AUG-1997
    Arabidopsis thaliana eukaryotic initiation factor (iso)-4F p28 subunit
     mRNA, partial cds.
    eukaryotic initiation factor (iso)-4F p28 subunit.

ATY08137    Y08137     3602bp    RNA      PLN      15-AUG-1997
    Arabidopsis thaliana mRNA for mitochondrial single-subunit DNA-dependent
     RNA polymerase.
    DNA-dependent RNA polymerase; rpoY gene; rpoY; mitochondrial
     single-subunit DNA-dependent RNA polymerase.

D17336      D17336       71bp    DNA      PLN      22-AUG-1997
    Arabidopsis thaliana chloroplast DNA for tRNA-Cys.
    tRNA-Cys.

==================== Updated DNA Sequences =====================

AB003280    AB003280     2127bp    mRNA     PLN      24-APR-1997
    Arabidopsis thaliana mRNA for Phosphoglycerate dehydrogenase, complete
     cds.
    Phosphoglycerate dehydrogenase.

AC002304    AC002304   106305bp    DNA      PLN      20-AUG-1997
    Genomic sequence for Arabidopsis thaliana BAC F14J16, complete sequence.
    HTG.

AC002328    AC002328   103412bp    DNA      HTG      18-AUG-1997
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F20N2; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC002338    AC002338    86876bp    DNA      HTG      22-AUG-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T09D09'
     genomic sequence near marker 'm283'; HTGS phase 1, 1 unordered pieces.
    HTG; HTGS_PHASE1.

AC002341    AC002341    88000bp    DNA      HTG      19-AUG-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T14G11'
     genomic sequence near marker 'TEn5'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002388    AC002388    85535bp    DNA      HTG      18-AUG-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T13E15'
     genomic sequence near marker 'CIC02E07'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

ATAC000103  AC000103    99370bp    DNA      PLN      06-MAR-1997
    Genomic sequence for Arabidopsis thaliana BAC F21J9, complete sequence.
    HTG.

ATAC002339  AC002339    91071bp    DNA      PLN      19-AUG-1997
    Arabidopsis thaliana chromosome II BAC T11A07 genomic sequence, complete
     sequence.
    HTG; T11A07.1; receptor-like protein kinase isolog; T11A07.2; GMP kinase
     isolog; T11A07.3; DNA binding protein isolog; T11A07.4;
     calcium-dependent protein kinase isolog; T11A07.5; polygalacturonase
     isolog; T11A07.6; 40S ribosomal protein S2 isolog; T11A07.7; T11A07.8;
     T11A07.9; T11A07.10; T11A07.11; insulinase isolog; T11A07.12; T11A07.13;
     T11A07.14; T11A07.15; T11A07.16; villin isolog; T11A07.17; T11A07.18;
     salt inducible protein isolog; T11A07.19; AP2 domain-containing protein
     isolog; T11A07.20; ABC transporter isolog, 3' partial.

F19P19      AC000104   107527bp    DNA      PLN      22-AUG-1997
    Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete
     sequence.
    HTG; F19P19.1; F19P19.2; F19P19.3; F19P19.4; F19P19.5; F19P19.6;
     F19P19.7; F19P19.8; F19P19.9; F19P19.10; F19P19.11; F19P19.12;
     F19P19.13; F19P19.14; F19P19.15; F19P19.16; F19P19.17; F19P19.18;
     F19P19.19; F19P19.20; F19P19.21; F19P19.22; F19P19.23; F19P19.24;
     tRNA-Gly; F19P19.25; F19P19.26; F19P19.27; F19P19.28; F19P19.29;
     F19P19.30; F19P19.31; F19P19.32.

=========== Updated Sequence Features/Annotations  =============

ATG6PDH15   X84230     1772bp    RNA      PLN      15-AUG-1997
    A.thaliana mRNA for glucose-6-phosphate dehydrogenase (clone E15).
    g6pdh gene; glucose-6-phosphate dehydrogenase; G6PDH; glucose-6-phosphate
     1-dehydrogenase.


To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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