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New Arabidopsis DNA 30-Aug-1997

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Sat Aug 30 13:10:34 EST 1997


====================== New DNA Sequences =======================

AB004871    AB004871      584bp    mRNA     PLN      27-AUG-1997
    Arabidopsis thaliana mRNA for CPC, complete cds.
    CPC.

AC002505    AC002505   121809bp    DNA      HTG      26-AUG-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T09J22'
     genomic sequence near marker 'B68'; HTGS phase 1, 7 unordered pieces.
    HTG; HTGS_PHASE1.

AC002510    AC002510    98966bp    DNA      HTG      28-AUG-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T32G06'
     genomic sequence near marker 'CIC11C08'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AF014822    AF014822     1495bp    mRNA     PLN      28-AUG-1997
    Arabidopsis thaliana developmentally regulated GTP binding protein
     (AtDRG1) mRNA, complete cds.
    AtDRG1; developmentally regulated GTP binding protein.

AF015552    AF015552      906bp    mRNA     PLN      28-AUG-1997
    Arabidopsis thaliana MADS-box (AGL9) mRNA, complete cds.
    AGL9.

ATU76845    U76845     1542bp    mRNA     PLN      29-AUG-1997
    Arabidopsis thaliana ubiquitin-specific protease (AtUBP3) mRNA, complete
     cds.
    AtUBP3; ubiquitin-specific protease.

ATU76846    U76846     1332bp    mRNA     PLN      29-AUG-1997
    Arabidopsis thaliana ubiquitin-specific protease (AtUBP4) mRNA, complete
     cds.
    AtUBP4; ubiquitin-specific protease.

==================== Updated DNA Sequences =====================

AC002338    AC002338    79273bp    DNA      HTG      26-AUG-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T09D09'
     genomic sequence near marker 'm283'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002342    AC002342    91071bp    DNA      HTG      27-AUG-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T19K24'
     genomic sequence near marker 'unknown'; HTGS phase 1, 4 unordered
     pieces.
    HTG; HTGS_PHASE1.

F7G19       AC000106   110514bp    DNA      PLN      26-AUG-1997
    Sequence of BAC F7G19 from Arabidopsis thaliana chromosome 1, complete
     sequence.
    HTG; F7G19.1; tRNA-Glu; F7G19.2; F7G19.3; F7G19.4; F7G19.5; F7G19.6;
     F7G19.7; F7G19.8; F7G19.9; F7G19.10; F7G19.11; F7G19.12; F7G19.13;
     F7G19.14; F7G19.15; F7G19.16; F7G19.17; tRNA-Pro; F7G19.18; F7G19.19;
     F7G19.20; F7G19.21; F7G19.22; F7G19.23; F7G19.24; tRNA-Ala; F7G19.25;
     F7G19.26.

=========== Updated Sequence Features/Annotations  =============

AB006054    AB006054     1800bp    DNA      PLN      27-AUG-1997
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Aa-0.
    acidic endochitinase.

AB006055    AB006055     1800bp    DNA      PLN      27-AUG-1997
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Bs-1.
    acidic endochitinase.

AB006056    AB006056     1800bp    DNA      PLN      27-AUG-1997
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Gr-1.
    acidic endochitinase.

AB006057    AB006057     1800bp    DNA      PLN      27-AUG-1997
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Hiroshima.
    acidic endochitinase.

AB006059    AB006059     1800bp    DNA      PLN      27-AUG-1997
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Al-0.
    acidic endochitinase.

AB006060    AB006060     1801bp    DNA      PLN      27-AUG-1997
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Chi-0.
    acidic endochitinase.

AB006061    AB006061     1779bp    DNA      PLN      27-AUG-1997
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Bl-1.
    acidic endochitinase.

AB006062    AB006062     1800bp    DNA      PLN      27-AUG-1997
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Mt-0.
    acidic endochitinase.

AB006063    AB006063     1799bp    DNA      PLN      27-AUG-1997
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Shokei.
    acidic endochitinase.

AB006064    AB006064     1801bp    DNA      PLN      27-AUG-1997
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Yo-0.
    acidic endochitinase.

AB006065    AB006065     1792bp    DNA      PLN      27-AUG-1997
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Bla-10.
    acidic endochitinase.

AB006066    AB006066     1791bp    DNA      PLN      27-AUG-1997
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Kn-0.
    acidic endochitinase.

AB006067    AB006067     1790bp    DNA      PLN      27-AUG-1997
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Ci-0.
    acidic endochitinase.

AB006068    AB006068     1782bp    DNA      PLN      27-AUG-1997
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Ita-0.
    acidic endochiotinase; acidic endochitinase.

AB006069    AB006069     1781bp    DNA      PLN      27-AUG-1997
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Pog-0.
    acidic endochitinase.

ATCKS1SUC   AJ000016      455bp    RNA      PLN      27-AUG-1997
    Arabidopsis thaliana mRNA for Cks1/Suc1 protein homologue.
    CKS1 gene; Cks1 protein; SUC1 gene; cks1.

ATHCOL2     L81119     1455bp    DNA      PLN      28-AUG-1997
    Arabidopsis thaliana Landsberg erecta COL2 (CONSTANS) gene, complete cds.
    CONSTANS; COL2.

ATHCOL2A    L81120     1197bp    mRNA     PLN      28-AUG-1997
    Arabidopsis thaliana Landsberg erecta COL2 (CONSTANS) mRNA, complete cds.
    CONSTANS; COL2.

ATU37697    U37697     1827bp    mRNA     PLN      28-AUG-1997
    Arabidopsis thaliana glutathione reductase mRNA, complete cds.
    glutathione reductase.

ATU40341    U40341     3677bp    mRNA     PLN      28-AUG-1997
    Arabidopsis thaliana carbamoyl phosphate synthetase large chain (CARB)
     mRNA, complete cds.
    CARB; carbamoyl phosphate synthetase large chain.

ATU44876    U44876     1258bp    mRNA     PLN      27-AUG-1997
    Arabidopsis thaliana pregeranylgeranyl pyrophosphate synthase (GGPS2)
     mRNA, complete cds.
    GGPS2; pregeranygeranyl pyrophosphate synthase.

ATU44877    U44877      836bp    mRNA     PLN      27-AUG-1997
    Arabidopsis thaliana geranylgeranyl pyrophosphate synthase (GGPS3) mRNA,
     partial cds.
    GGPS3; geranylgeranyl pyrophosphate synthase.

ATU48961    U48961      918bp    mRNA     PLN      27-AUG-1997
    Arabidopsis thaliana isopentenyl pyrophosphate isomerase (Ipi1) mRNA,
     partial cds.
    Ipi1; isopentenyl pyrophosphate isomerase.

ATU61231    U61231     1787bp    mRNA     PLN      28-AUG-1997
    Arabidopsis thaliana cytochrome P450 (CYP89A2) mRNA, complete cds.
    CYP89A2; cytochrome P450.

ATU66223    U66223     1105bp    mRNA     PLN      28-AUG-1997
    Arabidopsis thaliana p40 protein homolog mRNA, complete cds.
    p40 protein homolog.


To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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