New Arabidopsis DNA 06-Dec-1997

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Sat Dec 6 13:33:45 EST 1997


====================== New DNA Sequences =======================

AB009048    AB009048    71736bp    DNA      PLN      02-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K15E6.

AB009049    AB009049    87685bp    DNA      PLN      02-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MCD7.

AB009050    AB009050    86699bp    DNA      PLN      02-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MDF20.

AB009051    AB009051    27856bp    DNA      PLN      02-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MJH22.

AB009052    AB009052    85992bp    DNA      PLN      02-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MNF13.

AB009053    AB009053    78145bp    DNA      PLN      02-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MQB2.

AB009054    AB009054    83450bp    DNA      PLN      02-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MUL8.

AB009055    AB009055    81575bp    DNA      PLN      02-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXC20.

AB009056    AB009056    65958bp    DNA      PLN      02-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MZF18.

AF015301    AF015301     3973bp    mRNA     PLN      02-DEC-1997
    Arabidopsis thaliana RbohAp108 mRNA, complete cds.
    RbohAp108.

AF027408    AF027408     3234bp    mRNA     PLN      01-DEC-1997
    Arabidopsis thaliana phospholipase D-gamma mRNA, complete cds.
    phospholipase D-gamma.

AF030632    AF030632     1599bp    DNA      PLN      02-DEC-1997
    Arabidopsis thaliana Ty3/gypsy-type retrotransposon reverse
     transcriptase/integrase polyprotein pseudogene, partial sequence.

AF031428    AF031428     1117bp    mRNA     PLN      01-DEC-1997
    Arabidopsis thaliana Rho-like GTP binding protein (Rop4) mRNA, complete
     cds.
    Rop4; Rho-like GTP binding protein.

AF031429    AF031429      675bp    DNA      PLN      01-DEC-1997
    Arabidopsis thaliana Rho-like GTP binding protein (Rop5) gene, partial
     cds.
    Rop5; Rho-like GTP binding protein.

AF031649    AF031649     5798bp    DNA      PLN      01-DEC-1997
    Arabidopsis thaliana neutral amino acid transport system II (NAT2) gene,
     complete cds.
    NAT2; neutral amino acid transport system II.

AF033118    AF033118     2305bp    mRNA     PLN      01-DEC-1997
    Arabidopsis thaliana potassium transporter (KUP1) mRNA, complete cds.
    KUP1; potassium transporter.

AF034579    AF034579     2860bp    DNA      PLN      01-DEC-1997
    Arabidopsis thaliana copper amine oxidase (atao1) gene, complete cds.
    atao1; copper amine oxidase.

AF034694    AF034694      703bp    mRNA     PLN      01-DEC-1997
    Arabidopsis thaliana ribosomal protein L23a (AtrpL23a) mRNA, complete
     cds.
    AtrpL23a; ribosomal protein L23a.

ATAJ3069    AJ003069     3438bp    RNA      PLN      30-NOV-1997
    Arabidopsis thaliana mRNA for glycyl-tRNA synthetase.
    edd1 gene; glycyl-tRNA synthetase; edd1; aminoacyl-t-RNA synthetase.

ATCYC07     AJ001342      906bp    RNA      PLN      02-DEC-1997
    Arabidopsis thaliana mRNA for S-phase-specific ribosomal protein.
    cyc07; ribosomal protein; S-phase-specific protein; Putative
     S-phase-specific ribosomal protein.

ATTDNAINS   Y12834      159bp    DNA      PLN      02-DEC-1997
    Arabidopsis thaliana DNA for T-DNA insertion site and putative ORF.
    hypothetical protein; insertion site; T-DNA; orf.

ATU40489    U40489     2154bp    mRNA     PLN      02-DEC-1997
    Arabidopsis thaliana gl1 homolog mRNA, complete cds.

ATU80984    U80984     2579bp    mRNA     PLN      05-DEC-1997
    Arabidopsis thaliana AtZW10 mRNA, complete cds.
    AtZW10.

==================== Updated DNA Sequences =====================

AC002505    AC002505 AC003008   115851bp    DNA      HTG      03-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T9J22'
     genomic sequence near marker 'B68'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002521    AC002521    82735bp    DNA      HTG      03-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20F6'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002561    AC002561    56635bp    DNA      HTG      03-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T24P15'
     genomic sequence near marker 'EG05C12'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC003033    AC003033   106000bp    DNA      HTG      04-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T21L14'
     genomic sequence near marker 'TEn5'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC003105    AC003105   102145bp    DNA      HTG      03-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F18A8'
     genomic sequence near marker 'B68'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC002336  AC002336    84675bp    DNA      PLN      28-NOV-1997
    Arabidopsis thaliana chromosome II BAC T2P4 genomic sequence, complete
     sequence.
    HTG; T2P4.1; T2P4.2; T2P4.3; b-zip DNA-binding protein; T2P4.4; putative
     expansin; T2P4.5; T2P4.6; putative ribosomal protein S26; T2P4.7;
     putative serine/threonine protein kinase; T2P4.8; putative initiator
     tRNA phosphoribosyl-transferase; T2P4.9; T2P4.10; T2P4.11; putative
     potassium transporter; T2P4.12; T2P4.13; T2P4.14; T2P4.15; T2P4.16;
     putative uroporphyinogen decarboxylase; T2P4.17; putative myosin heavy
     chain; T2P4.18; T2P4.19; putative PTR2-B peptide transporter; T2P4.20;
     T2P4.21; T2P4.22.

ATAC002342  AC002342    82359bp    DNA      PLN      03-DEC-1997
    Arabidopsis thaliana BAC T19K24 genomic sequence, complete sequence.
    HTG; T19K24.1; similar to maize transposon MuDR mudrA protein, 3'
     partial; T19K24.2; putative disease resistance protein; T19K24.3;
     T19K24.4; T19K24.5; putative polygalacturonase; T19K24.6; T19K24.7;
     T19K24.8; human Mi-2 autoantigen-like protein; T19K24.9; putative
     Cu2+-transporting ATPase; T19K24.10; T19K24.11; similar to pMS10
     protein; T19K24.12; T19K24.13; putative C2 domain-containing protein;
     T19K24.14; T19K24.15; similar to DNA-damage-inducible protein P;
     T19K24.16; Dreg-2 like protein; T19K24.17.

U01377      U01377     1921bp    DNA      PLN      01-DEC-1997
    Arabidopsis thaliana (cor15a) gene, complete cds.
    cor15a.

=========== Updated Sequence Features/Annotations  =============

AF014960    AF014960     5574bp    mRNA     PLN      02-DEC-1997
    Arabidopsis thaliana multidrug resistance-associated protein 2 (AtMRP2)
     mRNA, complete cds.
    AtMRP2; multidrug resistance-associated protein 2.

ATCER1L19   X95965     1992bp    RNA      PLN      26-NOV-1997
    A.thaliana CER1-like gene (1992bp).
    CER1-like gene; CER1-like.

ATCER1L     X95964     4200bp    DNA      PLN      26-NOV-1997
    A.thaliana CER1-like gene (4200bp).
    CER1-like gene; CER1-like.

ATLECGENE   X95909     2242bp    RNA      PLN      26-NOV-1997
    A.thaliana mRNA for receptor like protein kinase.
    LRK1 gene; LRK1; receptor like protein kinase.

ATMTCITRN   X17528     1680bp    RNA      PLN      26-NOV-1997
    Arabidopsis thaliana mRNA for mitochondrial citrate synthetase.
    citrate synthase; citrate synthetase.

ATTDPRHOM   X94218      843bp    RNA      PLN      26-NOV-1997
    A.thaliana mRNA for 2-Cys peroxiredoxin bas1.
    2-Cys peroxiredoxin bas1; peroxide reductase; peroxiredoxin;
     thioredoxin-dependent.

ATU39782    U39782     1664bp    mRNA     PLN      04-DEC-1997
    Arabidopsis thaliana lysine and histidine specific transporter mRNA,
     complete cds.
    lysine and histidine specific transporter.

ATVATPASE   X92117      949bp    RNA      PLN      26-NOV-1997
    A.thaliana mRNA for vacuolar proton ATPase subunit E.
    subunit e; vacuolar proton-ATPase; V-type proton-ATPase.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






More information about the Arab-gen mailing list