New Arabidopsis DNA 15-Dec-1997

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Mon Dec 15 18:50:07 EST 1997


====================== New DNA Sequences =======================

AC003671    AC003671   102782bp    DNA      HTG      09-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 clone
     F17O7; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC003672    AC003672   107523bp    DNA      HTG      09-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F16B22'
     genomic sequence near marker 'm336'; HTGS phase 1, 8 unordered pieces.
    HTG; HTGS_PHASE1.

AC003673    AC003673   120300bp    DNA      HTG      09-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F19F24'
     genomic sequence near marker 'CIC06E08'; HTGS phase 1, 7 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC003674    AC003674    41269bp    DNA      HTG      10-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17A14'
     genomic sequence near marker 'CIC10A06'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AF027732    AF027732     2079bp    mRNA     PLN      14-DEC-1997
    Arabidopsis thaliana bHLH protein (Atmyc-2) mRNA, complete sequence.
    Atmyc-2.

AF034217    AF034217      945bp    mRNA     PLN      07-DEC-1997
    Arabidopsis thaliana ribosomal protein S6 (rps6) mRNA, complete cds.
    rps6; ribosomal protein S6.

AF036328    AF036328     1956bp    mRNA     PLN      11-DEC-1997
    Arabidopsis thaliana CLP protease regulatory subunit CLPX mRNA, nuclear
     gene encoding chloroplast protein, complete cds.
    CLPX; CLP protease regulatory subunit CLPX.

ATAJ3215    AJ003215     3061bp    DNA      PLN      04-DEC-1997
    Arabidopsis thaliana GTL1 gene.
    GTL1 gene; GTL1.

ATAJ3216    AJ003216     3752bp    DNA      PLN      04-DEC-1997
    Arabidopsis thaliana GTL2 gene.
    GTL2 gene; GTL2.

ATAJ3217    AJ003217     2415bp    DNA      PLN      04-DEC-1997
    Arabidopsis thaliana GT2 gene.
    GT2 gene; GT2.

ATAJ3218    AJ003218     1301bp    RNA      PLN      04-DEC-1997
    Arabidopsis thaliana partial GTL1 mRNA.
    GTL1 gene; GTL1.

ATAJ638     AJ222638      923bp    DNA      PLN      04-DEC-1997
    Arabidopsis thaliana promoter region for NADH-binding subunit of
     NADH:ubiquinone oxidoreductase (complex I) gene.
    NADH ubiquinone oxidoreductase; NADH-binding subunit; NADH-binding
     subunit NADH:ubiquinone oxidoreductase.

ATAJ639     AJ222639      595bp    DNA      PLN      04-DEC-1997
    Arabidopsis thaliana promoter region for 28,5 kDa Fe-S subunit of
     NADH:ubiquinone oxidoreductase (complex I) gene.
    Fe-S subunit; NADH ubiquinone oxidoreductase; 28.5 kDa Fe-S subunit
     NADH:ubiquinone oxidoreductase.

ATAJ644     AJ222644     1859bp    RNA      PLN      04-DEC-1997
    Arabidopsis thaliana NS1 mRNA for asparaginyl-tRNA synthetase.
    asparaginyl-tRNA synthetase; NS1 gene; NS1.

ATAJ645     AJ222645     1055bp    RNA      PLN      04-DEC-1997
    Arabidopsis thaliana NS2 mRNA for asparaginyl-tRNA synthetase.
    asparaginyl-tRNA synthetase; NS2 gene; NS2.

ATAJ646     AJ222646     3117bp    RNA      PLN      04-DEC-1997
    Arabidopsis thaliana mRNA for G2484-1 protein.
    G2484-1 gene; G2484-1.

ATNLM1      Y07625     1011bp    RNA      PLN      09-DEC-1997
    A.thaliana mRNA for NLM1 protein.
    aquaporin; NLM1 protein; NLM1 protein (NodLikeMip1).

D89981      D89981     3229bp    mRNA     PLN      09-DEC-1997
    Arabidopsis thaliana mRNA for metal-transporting P-type ATPase, complete
     cds.
    PAA1; metal-transporting P-type ATPase.

==================== Updated DNA Sequences =====================

AC002328    AC002328   109125bp    DNA      HTG      09-DEC-1997
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F20N2; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC003040    AC003040   128207bp    DNA      HTG      08-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F26B6'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC003058    AC003058    99586bp    DNA      HTG      11-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F27F23'
     genomic sequence near marker 'CIC06E08'; HTGS phase 1, 4 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC003096    AC003096    86150bp    DNA      HTG      05-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T29F13'
     genomic sequence near marker 've016'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC002561  AC002561    56635bp    DNA      PLN      10-DEC-1997
    Arabidopsis thaliana chromosome II BAC T24P15 genomic sequence, complete
     sequence.
    HTG; T24P15.1; putative actin, 5' partial; T24P15.2; T24P15.3; putative
     DNA polymerase delta small subunit; T24P15.4; T24P15.5; T24P15.6;
     T24P15.7; T24P15.8; T24P15.9; T24P15.10; T24P15.11; putative
     squamosa-promoter binding protein; T24P15.12; T24P15.13; T24P15.14;
     T24P15.15; similar to Drosophila couch potato protein; T24P15.16;
     putative cytochrome P-450; T24P15.17; T24P15.18; putative ATP-dependent
     RNA helicase; T24P15.19; unknwon protein; T24P15.20; putative protein
     kinase, 5' partial.

=========== Updated Sequence Features/Annotations  =============

AF009631    AF009631     1662bp    mRNA     PLN      07-DEC-1997
    Arabidopsis thaliana AP47/50p mRNA, complete cds.
    AP47/50p.

AF022872    AF022872     4276bp    DNA      PLN      07-DEC-1997
    Arabidopsis thaliana phosphate transporter (PT2) gene, complete cds.
    PT2; phosphate transporter.

AT23KB      Y11187    23918bp    DNA      PLN      04-DEC-1997
    A.thaliana RH1, TC1, G14587-5, G14587-6, and PRL1 genes.
    PRL1 gene; RH1 gene; TC1 gene; RH1; RH1 protein; TC1; Terpene cyclase,
     TC1; G14587-5; G14587-6; PRL1; PRL1 protein.

ATAAAA      Y12780     2190bp    RNA      PLN      08-DEC-1997
    A.thaliana mRNA for ATPase, partial.
    AAA gene; ATPase; AAA.

ATDEADBLH   Y11154     1423bp    RNA      PLN      04-DEC-1997
    Arabidopsis thaliana mRNA for DEAD box-like RNA helicase, partial.
    DEAD box-like RNA helicase; RH1 gene; RH1.

ATHYPPRO1   Y11155     1189bp    RNA      PLN      04-DEC-1997
    A.thaliana mRNA for hypothetical protein, partial (1189 bp).
    hypothetical protein.

ATHYPPRO2   Y11156     2019bp    RNA      PLN      04-DEC-1997
    A.thaliana mRNA for hypothetical protein, partial (2019 bp).
    hypothetical protein.

ATTERSYNT   Y11188     1797bp    RNA      PLN      04-DEC-1997
    A.thaliana mRNA for putative terpene synthase.
    terpene synthase; TS1 gene; TS1; Terpene synthase, TS1.

ATU1A       Z49991      920bp    RNA      PLN      04-DEC-1997
    A.thaliana mRNA for U1snRNP-specific protein (U1A).
    spliceosome; U1A; U1snRNP-specific protein.

ATU79555    U79555     1935bp    mRNA     PLN      07-DEC-1997
    Arabidopsis thaliana IAA23 mRNA, partial cds.
    IAA23.

ATU79557    U79556     2690bp    mRNA     PLN      07-DEC-1997
    Arabidopsis thaliana IAA24 mRNA, partial cds.
    IAA24.

ATU89014    U89014      848bp    mRNA     PLN      08-DEC-1997
    Arabidopsis thaliana early light-induced protein mRNA, complete cds.
    early light-induced protein.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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