New Arabidopsis DNA 20-Dec-1997

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Sat Dec 20 13:49:12 EST 1997


====================== New DNA Sequences =======================

AB007727    AB007727    79590bp    DNA      PLN      10-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXC9.

AC003680    AC003680    95335bp    DNA      HTG      15-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17K2'
     genomic sequence near marker 'CIC02E07'; HTGS phase 1, 4 unordered
     pieces.
    HTG; HTGS_PHASE1.

AF029876    AF029876     2279bp    mRNA     PLN      16-DEC-1997
    Arabidopsis thaliana high-affinity potassium transporter (AtKUP1) mRNA,
     complete cds.
    AtKUP1; high-affinity potassium transporter.

AF037168    AF037168     1132bp    mRNA     PLN      17-DEC-1997
    Arabidopsis thaliana DnaJ homologue (AtJ6) mRNA, complete cds.
    AtJ6; DnaJ homologue.

ATAJ110     AJ000110     1335bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana cys gene.
    cys gene; cystatin; cysteine proteinase inhibitor; cys.

ATDNACON    Y10556     8736bp    DNA      PLN      15-DEC-1997
    A.thaliana constans gene.
    constans gene; CONSTANS.

ATRNACON    Y10555     1336bp    RNA      PLN      15-DEC-1997
    A.thaliana mRNA for CONSTANS protein.
    constans gene; CONSTANS.

ATU53672    U53672     1310bp    mRNA     PLN      17-DEC-1997
    Arabidopsis thaliana early auxin-induced IAA22 mRNA, partial cds.
    IAA22.

ATUBC2      Y13031      824bp    RNA      PLN      12-DEC-1997
    A.thaliana mRNA for ubiquitin conjugating enzyme UBC2.
    UBC2 gene; ubiquitin conjugating enzyme; UBC2.

U79557      U79557     1631bp    mRNA     PLN      07-DEC-1997
    Arabidopsis thaliana IAA25 mRNA, partial cds.
    IAA25.

==================== Updated DNA Sequences =====================

AC002340    AC002340    86593bp    DNA      HTG      15-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T11J7'
     genomic sequence near marker 'm283'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC002521    AC002521    82735bp    DNA      HTG      18-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20F6'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC003105    AC003105   102145bp    DNA      HTG      18-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F18A8'
     genomic sequence near marker 'B68'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC003113    AC003113    86373bp    DNA      PLN      16-DEC-1997
    Genomic sequence for Arabidopsis thaliana BAC F24O1, complete sequence.
    HTG.

=========== Updated Sequence Features/Annotations  =============

AB005230    AB005230    74613bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MAC12, complete
     sequence.
    HTG.

AB005231    AB005231    82766bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBB18, complete
     sequence.
    HTG.

AB005232    AB005232    80315bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBG8, complete
     sequence.
    HTG.

AB005233    AB005233    79837bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBK23, complete
     sequence.
    HTG.

AB005234    AB005234    89779bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBK5, complete
     sequence.
    HTG.

AB005235    AB005235    75475bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MED24, complete
     sequence.
    HTG.

AB005236    AB005236    82035bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MIK22, complete
     sequence.
    HTG.

AB005237    AB005237    87835bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MJJ3, complete
     sequence.
    HTG.

AB005238    AB005238    75188bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MKP11, complete
     sequence.
    HTG.

AB005239    AB005239    84544bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MLN1, complete
     sequence.
    HTG.

AB005240    AB005240    80770bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MOK16, complete
     sequence.
    HTG.

AB005241    AB005241    57892bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MOP10, complete
     sequence.
    HTG.

AB005242    AB005242    82001bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MQK4, complete
     sequence.
    HTG.

AB005243    AB005243    86065bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MRN17, complete
     sequence.
    HTG.

AB005244    AB005244    82415bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MRO11, complete
     sequence.
    HTG.

AB005245    AB005245    86630bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MUG13, complete
     sequence.
    HTG.

AB005246    AB005246    77999bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MUP24, complete
     sequence.
    HTG.

AB005247    AB005247    87841bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXA21, complete
     sequence.
    HTG.

AB005248    AB005248    83646bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MX110, complete
     sequence.
    HTG.

AB005249    AB005249    83599bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXM12, complete
     sequence.
    HTG.

AB006696    AB006696    78379bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MAF19.

AB006697    AB006697    80970bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MAH20.

AB006698    AB006698    84510bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MCL19.

AB006699    AB006699    77363bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MDJ22.

AB006700    AB006700    83865bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MHF15.

AB006701    AB006701    84194bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MOP9.

AB006702    AB006702    86263bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MPO12.

AB006703    AB006703    71522bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MRH10.

AB006704    AB006704    79259bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MSH12.

AB006705    AB006705    74877bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MTH12.

AB006706    AB006706    81701bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MVA3.

AB006707    AB006707    82315bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MYC6.

AB006708    AB006708    78844bp    DNA      PLN      11-DEC-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MYJ24.

AT74A       X93607      466bp    DNA      PLN      12-DEC-1997
    A.thaliana microsatellite repeat region (clone 74A).
    microsatellite.

ATAK13      X86958      246bp    DNA      PLN      12-DEC-1997
    A.thaliana AK13 gene protein kinase catalytic domain (fragment).
    catalytic domain; protein kinase; protein kinase catalytic domain
     (fragment).

ATATCC1G    X59459     1263bp    DNA      PLN      12-DEC-1997
    A.thaliana AtCc-1 gene for cytochrome c.
    AtCc-1 gene; cytochrome C; haemprotein; AtCc-1; Cytochrome c.

ATU1A       Z49991      920bp    RNA      PLN      15-DEC-1997
    A.thaliana mRNA for U1snRNP-specific protein (U1A).
    spliceosome; U1A; U1snRNP-specific protein.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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