New Arabidopsis DNA 27-Dec-1997

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Sat Dec 27 15:54:06 EST 1997


====================== New DNA Sequences =======================

AC003952    AC003952    83131bp    DNA      PLN      24-DEC-1997
    Arabidopsis thaliana BAC T13L16 from chromosome IV, top arm, complete
     sequence.
    HTG; T13L16.1; putative nuclear protein; T13L16.2; hypothetical protein;
     T13L16.3; putative serine proteinase; T13L16.4; T13L16.5; T13L16.6;
     putative zinc-finger protein; T13L16.7; putative Tal-1-like reverse
     transcriptase; T13L16.8; putative Bop-like zinc-finger protein;
     T13L16.9; putative calcium-dependent ser/thr protein kinase; T13L16.10;
     putative DnaJ-like chaperonin; T13L16.11; putative glycine-rich,
     zinc-finger DNA-binding protein; T13L16.12; putative thaumatin-like
     pathogenesis-related protein; T13L16.13; putative senescence-assoc.
     rhodanese-like protein; T13L16.14; putative physical impedence protein;
     T13L16.15; T13L16.16; putative histidine kinase; tRNA-Ile.

AF036618    AF036618     2382bp    mRNA     PLN      24-DEC-1997
    Arabidopsis thaliana acetyl-CoA synthetase mRNA, complete cds.
    acetyl-CoA synthetase.

AF037362    AF037362     1807bp    mRNA     PLN      25-DEC-1997
    Arabidopsis thaliana ATA20 mRNA, complete cds.
    ATA20.

AF037442    AF037442     1966bp    mRNA     PLN      21-DEC-1997
    Arabidopsis thaliana histone acetyltransferase (HAT1) mRNA, complete cds.
    HAT1; histone acetyltransferase.

AF038557    AF038557     2846bp    mRNA     PLN      23-DEC-1997
    Arabidopsis thaliana ligand gated channel-like protein mRNA, complete
     cds.
    ligand gated channel-like protein.

D89824      D89824      882bp    mRNA     PLN      26-DEC-1997
    Arabidopsis thaliana AtRab mRNA for GTP-binding protein, complete cds.
    AtRab; GTP-binding protein.

==================== Updated DNA Sequences =====================

AB004796    AB004796     1352bp    mRNA     PLN      26-DEC-1997
    Arabidopsis thaliana mRNA for mitogen activated protein kinase kinase,
     complete cds.
    mitogen activated protein kinase kinase; nMAPKK.

AC002423    AC002423    97180bp    DNA      HTG      26-DEC-1997
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC T23E23; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC003105    AC003105    95160bp    DNA      HTG      24-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F18A8'
     genomic sequence near marker 'B68'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC003674    AC003674    41270bp    DNA      HTG      23-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17A14'
     genomic sequence near marker 'CIC10A06'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

ATAC003033  AC003033    96801bp    DNA      PLN      19-DEC-1997
    Arabidopsis thaliana chromosome II BAC T21L14 genomic sequence, complete
     sequence.
    HTG; T21L14.1; putative disease resistance protein (Cf-2.2), 3' partial;
     T21L14.2; mitochondrial F1-ATPase, gamma subunit; T21L14.3; similar to
     disease resistance protein (Cf-2.2); T21L14.4; putative disease
     resistance protein (Cf-2.2); T21L14.5; T21L14.6; T21L14.7; putative
     cellulase; T21L14.8; T21L14.9; T21L14.10; T21L14.11; photomorphogenesis
     repressor COP1; T21L14.12; Argonaute (AGO1)-like protein; T21L14.13;
     T21L14.14; putative protein disulfide isomerase precursor; T21L14.15;
     carrot B2 protein-like; T21L14.16; T21L14.17; T21L14.18; T21L14.19;
     T21L14.20; putative beta-glucosidase; T21L14.21; putative cyclin
     g-associated kinase; T21L14.22; T21L14.23; putative phosphate
     transporter.

ATORPC      X97323     1340bp    RNA      PLN      19-DEC-1997
    A.thaliana mRNA for outward rectifying potassium channel KCO1.
    outward rectifying potassium channel KCO1.

U79557      U79557     2690bp    mRNA     PLN      24-DEC-1997
    Arabidopsis thaliana IAA24 (IAA24) mRNA, partial cds.
    IAA24.

=========== Updated Sequence Features/Annotations  =============

ATCYC07     AJ001342      906bp    RNA      PLN      22-DEC-1997
    Arabidopsis thaliana mRNA for S-phase-specific ribosomal protein.
    cyc07; ribosomal protein; S-phase-specific protein; Putative
     S-phase-specific ribosomal protein.

ATNADPT     X96536     8130bp    DNA      PLN      19-DEC-1997
    A.thaliana mitochondrial tRNA-Tyr pseudogene & nad2 gene, exon 3,4 & 5.
    tyrosine; nad2 gene; NADH-ubiquinone oxidoreductase; Tyr-tRNA gene;
     tyr-tRNA; tRNA-Tyr; nad2.

ATRABGDI2   AJ001397     1684bp    RNA      PLN      22-DEC-1997
    Arabidopsis thaliana mRNA for rab GDP dissociation inhibitor, isoform 2.
    GDI2 gene; GDP dissociation inhibitor; rab-GDI gene; GDI2.

ATRPSNAD    X96535     4784bp    DNA      PLN      19-DEC-1997
    A.thaliana mitochondrial rps4 gene & nad2 gene, exon 1 & 2 and joining
     features.
    small; nad2 gene; NADH-ubiquinone oxidoreductase; rps4 gene; rps4; small
     ribosomal protein 4; nad2.

ATUDGE      Z54214     1356bp    RNA      PLN      22-DEC-1997
    A.thaliana mRNA for uridine diphosphate glucose epimerase.
    uridine diphosphate glucose epimerase.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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