New Arabidopsis DNA 12-Jul-1997

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Sat Jul 12 11:17:07 EST 1997


====================== New DNA Sequences =======================

AB005456    AB005456      842bp    mRNA     PLN      08-JUL-1997
    Arabidopsis thaliana mRNA for HY5, complete cds.
    HY5.

AC002311    AC002311    85683bp    DNA      HTG      09-JUL-1997
    *** SEQUENCING IN PROGRESS *** Genomic sequence of Arabidopsis BAC
     T26J12; HTGS phase 2, 2 ordered pieces.
    HTG; HTGS_PHASE2.

AF004393    AF004393     1072bp    mRNA     PLN      09-JUL-1997
    Arabidopsis thaliana salt-stress induced tonoplast intrinsic protein
     mRNA, complete cds.
    salt-stress induced tonoplast intrinsic protein.

ATFCA0      Z97335   200611bp    DNA      PLN      04-JUL-1997
    Arabidopsis thaliana DNA chromosome 4, ESSA I contig fragment No. 0.
    disease resistance protein homolog; hydroxymethyltransferase;
     adenosylhomocysteinase; hypothetical protein; heat shock transcription
     factor homolog; selenium-binding protein; major latex protein; A6
     anther-specific protein; AMP-binding protein; glucosyltransferase; COP9
     protein; xyloglucan endotransglycosylase-related protein; XTR-7; ;
     kinesin homolog; transport protein; salt-inducible protein homolog;
     ribonucleoprotein homolog.

ATFCA1      Z97336   206606bp    DNA      PLN      04-JUL-1997
    Arabidopsis thaliana DNA chromosome 4, ESSA I contig fragment No. 1.
    ribosomal protein; kinesin homolog; casein kinase I; protein kinase;
     ankyrin homolog; TMV resistance protein homolog; hypothetical protein;
     carnitine racemase homolog; retrovirus-related polyprotein homolog;
     reverse transcriptase-like protein; Ste20-like kinase homolog;
     CCAAT-binding transcription factor subunit; A(CBF-A); ; auxin-responsive
     protein IAA1; acylaminoacyl-peptidase homolog; disease resistance
     protein RPS2 homolog; germin type 2; calmodulin; RNA polymerase II fifth
     largest subunit homolog; heat shock protein; ATP-sulfurylase; light
     induced protein homolog; replication control protein homolog.

ATFCA2      Z97337   202861bp    DNA      PLN      04-JUL-1997
    Arabidopsis thaliana DNA chromosome 4, ESSA I contig fragment No. 2.
    hypothetical protein; centromere protein homolog; protein kinase homolog;
     RNA helicase homolog; proteasome chain protein; cytosolic
     O-acetylserine(thiol)lyase (EC; 4.2.99.8); ; ferredoxin;
     hydroxyproline-rich glycoprotein homolog; imidazoleglycerol-phosphate
     dehydratase; amine oxidase; tubulin alpha-6 chain (TUA6); S-linalool
     synthase homolog; cucumisin; hydroxynitrile lyase; cytochrome P450.

ATFCA3      Z97338   200216bp    DNA      PLN      04-JUL-1997
    Arabidopsis thaliana DNA chromosome 4, ESSA I contig fragment No. 3.
    phosphocholine cytidylyltransferase; hypothetical protein; coll wall
     protein homolog; Nucleotide sequence of a cDNA clone encoding a;
     beta-amylase from Arabidopsis thaliana; ; ABC transporter homolog;
     PDR5-like ABC transporter; glucosyltransferase.

ATFCA4      Z97339   205559bp    DNA      PLN      04-JUL-1997
    Arabidopsis thaliana DNA chromosome 4, ESSA I contig fragment No. 4.
    allene oxide synthase; indole-3-acetate beta-glucosyltransferase;
     pyruvate,orthophosphate dikinase; glutaredoxin; hypothetical protein;
     drought-induced protein.

ATFCA5      Z97340   209165bp    DNA      PLN      04-JUL-1997
    Arabidopsis thaliana DNA chromosome 4, ESSA I contig fragment No. 5.
    ATsEH homolog; hypothetical protein; cysteine proteinase; FCA gamma.

ATFCA6      Z97341   200952bp    DNA      PLN      04-JUL-1997
    Arabidopsis thaliana DNA chromosome 4, ESSA I contig fragment No. 6.
    hypothetical protein; glucosyltransferase homolog; membrane protein
     homolog; proteinase homolog; growth regulator homolog; heat shock
     protein 110 homolog; RNA helicase; cyanohydrin lyase homolog;
     decarboxylase homolog; ribosomal protein; limonene cyclase; limonene
     cyclase homolog; apetala2 domain TINY homolog.

ATFCA7      Z97342   206817bp    DNA      PLN      04-JUL-1997
    Arabidopsis thaliana DNA chromosome 4, ESSA I contig fragment No. 7.
    gibberellin oxidase homolog; DNA-binding homeotic protein Athb-2;
     enoyl-CoA hydratase; hypothetical protein; triacylglycerol lipase
     homolog; nuclear antigen homolog; resistance gene; resistance gene
     homolog; resistance gene homolog (fragment); protein kinase homolog;
     transcription factor homolog; allergen homolog; Clp proteinase homolog;
     Beta-Amylase; serine protease homolog.

ATFCA8      Z97343   207674bp    DNA      PLN      04-JUL-1997
    Arabidopsis thaliana DNA chromosome 4, ESSA I contig fragment No. 8.
    hypothetical protein; GTP-binding RAB2A protein; glucanase homolog;
     farnesyl diphosphate synthase (FPS2) protein; myosin heavy chain
     homolog; myosin II heavy chain homolog; SCARECROW homolog; lactate
     dehydrogenase; asparagine--tRNA ligase homolog; membrane channel
     protein; formyltransferase purU homolog; inositol 2-dehydrogenase
     homolog; ribosomal protein; DNA-binding protein homolog; LTR
     retrotransposon; thioesterase homolog; EREBP-4 homolog;
     carboxyl-terminal proteinase homolog; glycerol-3-phosphate permease
     homolog; protein kinase.

ATFCA9      Z97344    81850bp    DNA      PLN      04-JUL-1997
    Arabidopsis thaliana DNA chromosome 4, ESSA I contig fragment No. 9.
    hypothetical protein; peroxidase; GLABRA2 homolog; syntaxin; PSII D1
     protein processing enzyme; heat shock transcription factor HSF1;
     trehalose-6-phosphate synthase homolog; MYB transcription factor
     homolog; Zn finger protein homolog; acetylornithine deacetylase.

ATHASALY    Z97558     1788bp    RNA      PLN      09-JUL-1997
    Arabidopsis thaliana mRNA for argininosuccinate lyase.
    argH gene; argininosuccinate lyase; argH.

ATU71400    U71400     1249bp    mRNA     PLN      12-JUL-1997
    Arabidopsis thaliana S-adenosyl-methionine-sterol-C-methyltransferase
     mRNA, complete cds.
    S-adenosyl-methionine-sterol-C-; methyltransferase.

ATU83245    U83245     2332bp    mRNA     PLN      08-JUL-1997
    Arabidopsis thaliana auxin response factor 1 (ARF1) mRNA, complete cds.
    ARF1; auxin response factor 1.

ATU89296    U89296     2124bp    mRNA     PLN      08-JUL-1997
    Arabidopsis thaliana auxin response transcription factor 3 (ARF3) mRNA,
     complete cds.
    auxin response transcription factor 3.

ATU89771    U89771     1698bp    mRNA     PLN      08-JUL-1997
    Arabidopsis thaliana ARF1-binding protein mRNA, complete cds.
    ARF1-binding protein.

ATY14199    Y14199     1521bp    RNA      PLN      10-JUL-1997
    Arabidopsis thaliana mRNA for MAP3K delta-1 protein kinase, partial.
    MAP3K delta-1 protein kinase.

ATZ86093    Z86093     1450bp    RNA      PLN      07-JUL-1997
    A.thaliana mRNA for b-Zip DNA binding protein.
    BZIP; DNA binding protein; b-Zip DNA binding protein.

ATZ86094    Z86094     1010bp    RNA      PLN      07-JUL-1997
    A.thaliana mRNA for plastid protein.
    plastid protein.

ATZ86095    Z86095     1018bp    RNA      PLN      07-JUL-1997
    A.thaliana mRNA for peptidyl-prolyl cis-trans isomerase.
    peptidyl-prolyl cis-trans isomerase.

IG005I10    AF013293   111906bp    DNA      PLN      12-JUL-1997
    Arabidopsis thaliana BAC IG005I10.
    A_IG005I10.1; A_IG005I10.24; A_IG005I10.23; A_IG005I10.2; A_IG005I10.3;
     A_IG005I10.5; A_IG005I10.4; A_IG005I10.6; A_IG005I10.22; A_IG005I10.nn;
     A_IG005I10.21; A_IG005I10.20; A_IG005I10.19; A_IG005I10.8;
     A_IG005I10.18; A_IG005I10.17; A_IG005I10.16; A_IG005I10.9;
     A_IG005I10.10; A_IG005I10.11; A_IG005I10.15; A_IG005I10.12;
     A_IG005I10.13; A_IG005I10.14.

TM018A10    AF013294   106184bp    DNA      PLN      12-JUL-1997
    Arabidopsis thaliana BAC TM018A10.
    tRNA-Gln; A_TM018A10.1; A_TM018A10.18; A_TM018A10.19; A_TM018A10.2;
     A_TM018A10.17; A_TM018A10.16; A_TM018A10.3; A_TM018A10.4; A_TM018A10.5;
     A_TM018A10.6; A_TM018A10.7; AT0ZI1; A_TM018A10.22; A_TM018A10.8;
     A_TM018A10.14; A_TM018A10.13; A_TM018A10.9; A_TM018A10.23;
     A_TM018A10.24; A_TM018A10.12; A_TM018A10.11; A_TM018A10.20;
     A_TM018A10.10.

==================== Updated DNA Sequences =====================

AC002291    AC002291    96630bp    DNA      HTG      09-JUL-1997
    *** SEQUENCING IN PROGRESS *** Genomic sequence of Arabidopsis BAC
     F22K20; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002292    AC002292   120787bp    DNA      PLN      11-JUL-1997
    Genomic sequence of Arabidopsis BAC F8A5, complete sequence.
    HTG.

=========== Updated Sequence Features/Annotations  =============

ATORPC      X97323     1349bp    RNA      PLN      04-JUL-1997
    A.thaliana mRNA for outward rectifying potassium channel KCO1.
    outward rectifying potassium channel KCO1.

ATU95973    U95973   115641bp    DNA      PLN      10-JUL-1997
    Arabidopsis thaliana BAC T19D16 genomic sequence.
    T19D16.1; receptor-associated kinase isolog; T19D16.22; T19D16.23;
     T19D16.2; transcription factor RUSH-1alpha isolog; T19D16.3;
     lysophospholipase isolog; T19D16.4; Serine carboxypeptidase isolog;
     T19D16.24; T19D16.5; T19D16.6; Ser/Thr protein kinase isolog; T19D16.7;
     DnaJ isolog; T19D16.8; tRNA-Arg; T19D16.25; T19D16.9; tRNA-Met;
     T19D16.26; Barley Mlo protein isolog; T19D16.27; T19D16.10; membrane
     protein PTM1 precursor isolog; T19D16.11; Fe(II) transporter isolog;
     T19D16.12; ferredoxin precusor isolog; T19D16.13; endomembrane protein
     EMP70 precusor isolog; T19D16.14; Ser/Thr kinase; T19D16.15; DNA
     helicase isolog; T19D16.16; disease resistance protein RPM1 isolog;
     T19D16.17; membrane-associated salt-inducible protein; isolog; ;
     T19D16.18; phosphatidylinositol-4-phosphate 5-kinase; T19D16.19;
     T19D16.28; T19D16.20; BRCA1-associated RING domain protein isolog;
     T19D16.21; receptor-kinase isolog.


To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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