New Arabidopsis DNA 19-Jul-1997

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Sat Jul 19 13:57:19 EST 1997


====================== New DNA Sequences =======================

AB005230    AB005230    74613bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MAC12, complete
     sequence.
    HTG.

AB005231    AB005231    82766bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBB18, complete
     sequence.
    HTG.

AB005232    AB005232    80315bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBG8, complete
     sequence.
    HTG.

AB005233    AB005233    79837bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBK23, complete
     sequence.
    HTG.

AB005234    AB005234    89779bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBK5, complete
     sequence.
    HTG.

AB005235    AB005235    75475bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MED24, complete
     sequence.
    HTG.

AB005236    AB005236    82035bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MIK22, complete
     sequence.
    HTG.

AB005237    AB005237    87835bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MJJ3, complete
     sequence.
    HTG.

AB005238    AB005238    75188bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MKP11, complete
     sequence.
    HTG.

AB005239    AB005239    84544bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MLN1, complete
     sequence.
    HTG.

AB005240    AB005240    80770bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MOK16, complete
     sequence.
    HTG.

AB005241    AB005241    57892bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MOP10, complete
     sequence.
    HTG.

AB005242    AB005242    82001bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MQK4, complete
     sequence.
    HTG.

AB005243    AB005243    86065bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MRN17, complete
     sequence.
    HTG.

AB005244    AB005244    82415bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MRO11, complete
     sequence.
    HTG.

AB005245    AB005245    86630bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MUG13, complete
     sequence.
    HTG.

AB005246    AB005246    77999bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MUP24, complete
     sequence.
    HTG.

AB005247    AB005247    87841bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXA21, complete
     sequence.
    HTG.

AB005248    AB005248    83646bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MX110, complete
     sequence.
    HTG.

AB005249    AB005249    83599bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXM12, complete
     sequence.
    HTG.

AC002328    AC002328   102203bp    DNA      HTG      15-JUL-1997
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F20N2; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC002329    AC002329    98102bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana chromosome IV, top arm, complete sequence.
    HTG; F05J06.1; hypothetical protein with weak similarity to S. cerevisiae
     hypothetical protein PID:g1066493; F05J06.2; putative ligand-gated ion
     channel protein; F05J06.3; putative mitochondrial phosphate translocator
     protein; F05J06.4; predicted protein of unknown function; F05J06.5;
     CDPK6 (calmodulin-domain protein kinase isoform 6); F05J06.6;
     hypothetical protein; F05J06.7; hypothetical protein similar to A.
     thaliana protein F19K23.19; F05J06.8; hypothetical protein similar to
     F05J06.10; F05J06.9; putative obtusifoliol 14-alpha demethylase;
     F05J06.10; F05J06.11; F05J06.12; cytosolic ribosomal protein S4;
     F05J06.13; 3-hydroxy-3-methylglutaryl-CoA reductase (HMG2 protein);
     F05J06.14; clathrin adaptor protein small chain subunit (AP19 protein);
     F05J06.15; predicted glycosyl hydrolase; F05J06.16; F05J06.17;
     F05J06.18; NADPH thioredoxin reductase; F05J06.19; Mlo-like
     protein/F05J06.19; F05J06.20; F05J06.21; putative RING zinc-finger
     protein; F05J06.22; F05J06.23; putative Mlo-like protein/F05J06.23.

AC002330    AC002330   113566bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana BAC T10P11, complete sequence.
    HTG; T10P11.1; predicted protein of unknown function; T10P11.2; T10P11.3;
     sulfate transporter protein; T10P11.4; putative zinc-finger protein;
     T10P11.5; T10P11.6; hypothetical protein; T10P11.7; putative protein
     trafficking component; T10P11.8; T10P11.9; putative bZIP-like DNA
     binding protein; T10P11.10; putative serine/threonine protein
     kinase/T10P11.10; T10P11.11; putative tryptophan synthase alpha 1-like
     protein; T10P11.12; putative Mlo-like protein/T10P11.12A; predicted
     Mlo-like protein/T10P11.12B; T10P11.13; T10P11.14; predicted NADH
     dehydrogenase 24 kDa subunit; T10P11.15; LUMINIDEPENDENS protein;
     T10P11.16; T10P11.17; T10P11.18; glutathione S transferase; T10P11.19;
     putative chloroplast outer envelope 86-like protein; T10P11.20.

AC002332    AC002332   161002bp    DNA      HTG      17-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F04P09'
     genomic sequence near marker 've015'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC002333    AC002333    98734bp    DNA      HTG      17-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F18O19'
     genomic sequence near marker 'CIC10F02'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002334    AC002334   101115bp    DNA      HTG      17-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F25I18'
     genomic sequence near marker 'TEn5'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC002335    AC002335   109616bp    DNA      HTG      17-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T01O24'
     genomic sequence near marker 'CIC10F02'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002336    AC002336    86011bp    DNA      HTG      17-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T02P04'
     genomic sequence near marker 'CIC10A06'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002337    AC002337    88068bp    DNA      HTG      17-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T08I13'
     genomic sequence near marker 'CIC06C03'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002338    AC002338    82200bp    DNA      HTG      17-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T09D09'
     genomic sequence near marker 'm283'; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC002339    AC002339    98017bp    DNA      HTG      17-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T11A07'
     genomic sequence near marker 'CIC11C08'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002340    AC002340    91200bp    DNA      HTG      17-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T11J07'
     genomic sequence near marker 'm283'; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC002341    AC002341    89719bp    DNA      HTG      17-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T14G11'
     genomic sequence near marker 'TEn5'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC002342    AC002342    90756bp    DNA      HTG      17-JUL-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T19K24'
     genomic sequence near marker 'unknown'; HTGS phase 1, 6 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002343    AC002343   116156bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana BAC T19F06 genomic sequence, complete sequence.
    HTG; T19F06.1; HSP90 isolog; T19F06.2; T19F06.3; T19F06.4; T19F06.5;
     T19F06.6; T19F06.7; T19F06.8; T19F06.9; T19F06.10; T19F06.11; T19F06.12;
     T19F06.13; T19F06.14; T19F06.15; T19F06.23; tRNA-Gly; T19F06.16;
     T19F06.17; T19F06.18; T19F06.19; T19F06.20; T19F06.21; T19F06.22.

AC002354    AC002354    94636bp    DNA      PLN      18-JUL-1997
    Arabidopsis thaliana genomic sequence of BAC F06P23 from chromosome IV,
     complete sequence.
    HTG; F06P23.1; putative tetracycline transporter-like protein/F06P23.1;
     F06P23.2; putative tetracycline transporter-like protein/F06P23.2A;
     putative tetracyline transporter-like protein/F06P23.2B; F06P23.3;
     predicted protein of unknown function; F06P23.4; hypothetical protein;
     F06P23.5; putative leucine-rich protein/F06P23.5; F06P23.6; F06P23.7;
     putative NAM/no apical meristem protein; F06P23.8; putative
     disease-resistance protein/F06P23.8; F06P23.9; putative
     disease-resistance protein/F06P23.9; F06P23.10; F06P23.11; F06P23.12;
     putative B-ZIP-like transcription factor; F06P23.13; F06P23.14; NAD+
     dependent isocitrate dehydrogenase subunit 2; F06P23.14.1; predicted
     leucine-rich protein/F06P23.14.1; F06P23.16.

ATU62020    U62020     1923bp    mRNA     PLN      16-JUL-1997
    Arabidopsis thaliana lysine-sensitive aspartate kinase mRNA, complete
     cds.
    lysine-sensitive aspartate kinase.

ATY14251    Y14251     2313bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana GST11 gene.
    glutathione s-transferase; GST11 gene; gGST11; glutathione S-transferase.

D84552      D84552     1260bp    DNA      PLN      16-JUL-1997
    Arabidopsis thaliana chloroplast genes for trnC and rpoB, partial cds.
    RNA polymerase beta subunit; rpoB; trnC.

D86591      D86591     1755bp    mRNA     PLN      15-JUL-1997
    Arabidopsis thaliana mRNA for inorganic phosphate transporter, complete
     cds.
    PHT; inorganic phosphate transporter.

D86608      D86608     5796bp    DNA      PLN      15-JUL-1997
    Arabidopsis thaliana DNA for Inorganic phosphate transporter, complete
     cds.
    Inorganic phosphate transporter; PHT.

==================== Updated DNA Sequences =====================

AC002131    AC002131   123000bp    DNA      HTG      18-JUL-1997
    *** SEQUENCING IN PROGRESS *** F12F1; HTGS phase 2, 2 ordered pieces.
    HTG; HTGS_PHASE2.

ATU89267    U89267     1357bp    mRNA     PLN      17-JUL-1997
    Arabidopsis thaliana p-hydroxyphenylpyruvate dioxygenase (HPD) mRNA,
     complete cds.
    HPD; p-hydroxyphenylpyruvate dioxygenase.

=========== Updated Sequence Features/Annotations  =============

ATAF002109  AF002109   108847bp    DNA      PLN      15-JUL-1997
    Arabidopsis thaliana chromosome II BAC T28M21 genomic sequence.
    T28M21.1; 5' partial cucumisin serine protease isolog; T28M21.2;
     tRNA-Asp; T28M21.3; T28M21.4; T28M21.5; T28M21.6; T28M21.7; T28M21.8;
     T28M21.9; T28M21.10; T28M21.11; T28M21.12; T28M21.13; T28M21.14;
     T28M21.15; T28M21.16; T28M21.17; T28M21.18; T28M21.19; T28M21.20;
     T28M21.21; T28M21.22; T28M21.23; T28M21.24; T28M21.25.

ATRNACYTO   X90458     1728bp    RNA      PLN      18-JUL-1997
    A.thaliana mRNA for cytochrome P450.
    CYP86A1 gene; cytochrome P-450; CYP86; cytochrome p450.

ATRNAOSM    X89008      906bp    RNA      PLN      15-JUL-1997
    A.thaliana mRNA for osmotin protein.
    osm34 gene; osmotin; osm34.

ATRPOBC1    Y13690     5059bp    DNA      PLN      14-JUL-1997
    Arabidopsis thaliana chloroplast trnC, rpoB & rpoC1 genes.
    DNA-dependent RNA; DNA-dependent RNA polymerase subunit beta; trnC;
     transfer RNA-Cys; rpoB; rpoC1; DNA-dependent RNA polymerase subunit
     beta'.

ATU78721    U78721   114144bp    DNA      PLN      14-JUL-1997
    Arabidopsis thaliana chromosome II BAC T01B08 genomic sequence, complete
     sequence.
    HTG; T01B08.26; T01B08.1; T01B08.27; T01B08.2; T01B08.3; T01B08.29;
     T01B08.4; T01B08.5; T01B08.6; T01B08.7; T01B08.8; T01B08.28; T01B08.9;
     T01B08.10; T01B08.11; T01B08.12; T01B08.13; T01B08.14; T01B08.15;
     T01B08.30; T01B08.16; T01B08.31; T01B08.17; tRNA-Pro; T01B08.18;
     T01B08.19; T01B08.20; T01B08.21; T01B08.22; T01B08.23; T01B08.24;
     T01B08.25; T01B08.32.

ATU90439    U90439    95824bp    DNA      PLN      15-JUL-1997
    Arabidopsis thaliana chromosome II BAC T06D20 genomic sequence, complete
     sequence.
    T06D20.25; T06D20.1; actin isolog; T06D20.2; T06D20.3; T06D20.4;
     T06D20.5; T06D20.6; T06D20.7; T06D20.8; T06D20.9; tRNA-Ser; T06D20.10;
     T06D20.11; T06D20.12; T06D20.13; T06D20.14; T06D20.15; T06D20.26;
     T06D20.16; T06D20.17; T06D20.18; T06D20.19; T06D20.20; T06D20.21;
     T06D20.22; T06D20.23; T06D20.24.

ATU93215    U93215   104861bp    DNA      PLN      15-JUL-1997
    Arabidopsis thaliana chromosome II BAC T06B20 genomic sequence, complete
     sequence.
    T06B20.1; maize transposon MuDR mudrA protein isolog; T06B20.2; T06B20.3;
     T06B20.4; T06B20.5; T06B20.6; T06B20.7; T06B20.8; T06B20.9; T06B20.10;
     T06B20.11; T06B20.12; T06B20.13; T06B20.14; T06B20.15; T06B20.16;
     T06B20.25; T06B20.17; T06B20.18; T06B20.19; tRNA-Gly; T06B20.20;
     T06B20.26; T06B20.21; T06B20.22; T06B20.23; T06B20.24; T06B20.27.


To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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