New Arabidopsis DNA 08-Nov-1997

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Sat Nov 8 16:49:21 EST 1997


====================== New DNA Sequences =======================

AB000835    AB000835     3250bp    DNA      PLN      30-OCT-1997
    Arabidopsis thaliana gene for geranyl geranyl pyrophosphate synthase,
     complete cds.
    geranyl geranyl pyrophosphate synthase; GGPS6.

AC003033    AC003033   106050bp    DNA      HTG      29-OCT-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T21L14'
     genomic sequence near marker 'TEn5'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC003040    AC003040   125312bp    DNA      HTG      31-OCT-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F26B6'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 7 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC003056    AC003056    91564bp    DNA      HTG      05-NOV-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'CIT987SK' BAC
     'A-923A4' genomic sequence near marker '+16p13.1-12, 16q23'; HTGS phase
     1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC003058    AC003058   102350bp    DNA      HTG      06-NOV-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F27F23'
     genomic sequence near marker 'CIC06E08'; HTGS phase 1, 8 unordered
     pieces.
    HTG; HTGS_PHASE1.

AF002220    AF002220     7179bp    DNA      PLN      06-NOV-1997
    Arabidopsis thaliana kinesin-like calmodulin-binding protein gene,
     complete cds.
    kinesin-like calmodulin-binding protein.

AF012833    AF012833     2685bp    mRNA     PLN      31-OCT-1997
    Arabidopsis thaliana ADL2 mRNA, complete cds.
    ADL2.

AF022872    AF022872     4276bp    DNA      PLN      26-OCT-1997
    Arabidopsis thaliana phosphate transporter (PT2) gene, complete cds.
    PT2; phosphate transporter.

AF024590    AF024590     1876bp    mRNA     PLN      28-OCT-1997
    Arabidopsis thaliana RNA polymerase sigma subunit 1 (RPOD1) mRNA, nuclear
     gene encoding chloroplast protein, complete cds.
    RPOD1; RNA polymerase sigma subunit 1.

AF026473    AF026473      486bp    DNA      PLN      04-NOV-1997
    Arabidopsis thaliana calmodulin-related protein (TCH2) gene, complete
     cds.
    TCH2; calmodulin-related protein.

AF028842    AF028842     1477bp    mRNA     PLN      28-OCT-1997
    Arabidopsis thaliana DegP protease mRNA, nuclear gene encoding
     chloroplast protein, complete cds.
    DegP; DegP protease precursor; DegP protease.

ATAJ2280    AJ002280     1723bp    RNA      PLN      27-OCT-1997
    Arabidopsis thaliana mRNA for shaggy-like kinase beta.
    ASKbeta gene; shaggy-like kinase beta; ASKbeta.

ATAJ2414    AJ002414     1712bp    RNA      PLN      31-OCT-1997
    Arabidosis thaliana mRNA for a hnRNP-like protein.
    hnRNP-like protein.

ATGABI3     AJ002473     3521bp    DNA      PLN      29-OCT-1997
    Arabidopsis thaliana gene encoding ABI3 protein.
    ABI3 gene; ABI3; ABI3 protein; abi3-4; abi3-1.

ATRABGDI2   AJ001397     1684bp    RNA      PLN      27-OCT-1997
    Arabidopsis thaliana mRNA for rab GDP dissociation inhibitor, isoform 2.
    GDI2 gene; GDP dissociation inhibitor; rab-GDI gene; GDI2.

ATRSZP21    AJ002377      895bp    RNA      PLN      31-OCT-1997
    Arabidopsis thaliana mRNA for RSZp21 splicing factor.
    Zn; 21kD protein; arginine/serine-rich; RSZp21; splicing factor; RSZp21
     protein.

ATRSZP22    AJ002378      894bp    RNA      PLN      31-OCT-1997
    Arabidopsis thaliana mRNA for RSZp22 splicing factor.
    Zn; 22kD protein; arginine/serine-rich; RSZp22; splicing factor; RSZp22
     protein.

ATSULFRED   Y10157     6055bp    DNA      PLN      01-NOV-1997
    A.thaliana gene encoding sulfite reductase.
    sulfite reductase.

ATU39782    U39782     1664bp    mRNA     PLN      31-OCT-1997
    Arabidopsis thaliana lysine and histidine specific transporter mRNA,
     complete cds.
    lysine and histidine specific transporter.

ATU39783    U39783     1636bp    mRNA     PLN      31-OCT-1997
    Arabidopsis thaliana amino acid transport protein mRNA, complete cds.
    amino acid transport protein.

ATU89512    U89512      895bp    mRNA     PLN      06-NOV-1997
    Arabidopsis thaliana b-keto acyl reductase (glossy8) mRNA, partial cds.
    glossy8; b-keto acyl reductase.

ATU90927    U90927     6570bp    DNA      PLN      30-OCT-1997
    Arabidopsis thaliana glyoxalase II isozyme (Glx2-1) gene, nuclear gene
     encoding mitochondrial protein, complete cds.
    Glx2-1; glyoxalase II isozyme.

ATU90928    U90928     1404bp    mRNA     PLN      30-OCT-1997
    Arabidopsis thaliana glyoxalase II mitochondrial isozyme (Glx2-1) mRNA,
     nuclear gene encoding mitochondrial protein, complete cds.
    Glx2-1; glyoxalase II mitochondrial isozyme.

ATU90929    U90929     1000bp    mRNA     PLN      30-OCT-1997
    Arabidopsis thaliana glyoxalase II cytoplasmic isozyme (Glx2-2) mRNA,
     complete cds.
    Glx2-2; glyoxalase II cytoplasmic isozyme.

ATU94998    U94998      893bp    DNA      PLN      06-NOV-1997
    Arabidopsis thaliana class 1 non-symbiotic hemoglobin (AHB1) gene,
     complete cds.
    AHB1; class 1 non-symbiotic hemoglobin.

ATU94999    U94999     1345bp    DNA      PLN      06-NOV-1997
    Arabidopsis thaliana class 2 non-symbiotic hemoglobin (AHB2) gene,
     complete cds.
    AHB2; class 2 non-symbiotic hemoglobin.

ATY15193    Y15193     1964bp    DNA      PLN      01-NOV-1997
    Arabidopsis thaliana GAI gene.
    GAI gene; GAI.

ATY15194    Y15194     2201bp    RNA      PLN      01-NOV-1997
    Arabidopsis thaliana mRNA for GRS protein.
    GRS protein.

D63460      D63460     2420bp    DNA      PLN      27-OCT-1997
    Arabidopsis thaliana DNA for alcohol dehydrogenase, complete cds.
    Adh; alcohol dehydrogenase.

D63461      D63461     2469bp    DNA      PLN      27-OCT-1997
    Arabidopsis thaliana DNA for alcohol dehydrogenase, complete cds.
    Adh; alcohol dehydrogenase.

D63462      D63462     2420bp    DNA      PLN      27-OCT-1997
    Arabidopsis thaliana DNA for alcohol dehydrogenase, complete cds.
    Adh; alcohol dehydrogenase.

D63463      D63463     2412bp    DNA      PLN      27-OCT-1997
    Arabidopsis thaliana DNA for alcohol dehydrogenase, complete cds.
    Adh; alcohol dehydrogenase.

D63464      D63464     2516bp    DNA      PLN      27-OCT-1997
    Arabidopsis thaliana DNA for alcohol dehydrogenase, complete cds.
    Adh; alcohol dehydrogenase.

==================== Updated DNA Sequences =====================

AC002131    AC002131   123386bp    DNA      PLN      04-NOV-1997
    Sequence of BAC F12F1 from Arabidopsis thaliana chromosome 1, complete
     sequence.
    HTG.

AC002340    AC002340    91050bp    DNA      HTG      04-NOV-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T11J7'
     genomic sequence near marker 'm283'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC002392    AC002392   107350bp    DNA      HTG      05-NOV-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20K24'
     genomic sequence near marker 'CIC06E08'; HTGS phase 1, 8 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002411    AC002411    78259bp    DNA      PLN      28-OCT-1997
    Sequence of BAC F20D22 from Arabidopsis thaliana chromosome 1, complete
     sequence.
    HTG.

AC002505    AC002505   122985bp    DNA      HTG      06-NOV-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T9J22'
     genomic sequence near marker 'B68'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002510    AC002510    99029bp    DNA      HTG      29-OCT-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T32G6'
     genomic sequence near marker 'CIC11C08'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002561    AC002561    64129bp    DNA      HTG      29-OCT-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T24P15'
     genomic sequence near marker 'EG05C12'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC003000    AC003000   115000bp    DNA      HTG      31-OCT-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T5I7'
     genomic sequence near marker 'CIC10A06'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC003027    AC003027   117112bp    DNA      HTG      28-OCT-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
     F21M11 genomic sequence; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC003028    AC003028   118541bp    DNA      HTG      05-NOV-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F16M14'
     genomic sequence near marker 've018'; HTGS phase 1, 18 unordered pieces.
    HTG; HTGS_PHASE1.

ATAKT1      X62907     2654bp    RNA      PLN      27-OCT-1997
    A.thaliana AKT1 gene for potassium transporter.
    potassium; AKT1 gene; Ankyrin repeat domain; H5 K+ domain; AKT1;
     Potassium tranporter.

ATRSP40     X99437     1382bp    RNA      PLN      31-OCT-1997
    Arabidopsis thaliana mRNA for arginine/serine-rich splicing factor,
     RSp40.
    splicing factor; RSp40.

=========== Updated Sequence Features/Annotations  =============

AB003175    AB003175     3538bp    DNA      PLN      30-OCT-1997
    Arabidopsis thaliana DNA for alternative oxidase (AOX1c gene), complete
     cds.
    AOX1c; alternative oxidase.

AB003176    AB003176     2607bp    DNA      PLN      30-OCT-1997
    Arabidopsis thaliana DNA for alternative oxidase (AOX2 gene), complete
     cds.
    AOX2; alternative oxidase.

AC002983    AC002983   107183bp    DNA      PLN      27-OCT-1997
    A. thaliana BAC T3F12 from chromsome IV, likely from the long arm,
     complete sequence.
    HTG; T3F12.1; putative phosphoglyceride transfer protein; T3F12.1.1;
     putative mudrA-like retrotransposon-associated protein; T3F12.2;
     hypothetical protein; T3F12.3; T3F12.4; T3F12.5; T3F12.6; T3F12.7;
     putative sulfate transporter; T3F12.8; predicted protein; T3F12.9;
     T3F12.10; putative zinc-finger protein; T3F12.11; putative
     microfibril-associated protein.

AF002706    AF002706     3125bp    mRNA     PLN      04-NOV-1997
    Arabidopsis thaliana MutS homolog 2 (MSH2) mRNA, complete cds.
    MSH2; MutS homolog 2.

AF003005    AF003005     5317bp    DNA      PLN      04-NOV-1997
    Arabidopsis thaliana MutS homolog 2 (atMSH2) gene, complete cds.
    atMSH2; MutS homolog 2.

AF009657    AF009657      258bp    mRNA     PLN      04-NOV-1997
    Arabidopsis thaliana MutS homolog 6-like protein mRNA, partial cds.
    MutS homolog 6-like protein.

AF014806    AF014806     4283bp    DNA      PLN      04-NOV-1997
    Arabidopsis thaliana alpha-glucosidase 1 (Aglu1) gene, complete cds.
    Aglu1; alpha-glucosidase 1.

ATABI2      Y11840     1636bp    DNA      PLN      27-OCT-1997
    Arabidopsis thaliana ABI2 gene.
    ABI2 gene; ABI2.

ATABI3      X68141     2868bp    RNA      PLN      29-OCT-1997
    A.thaliana mRNA for ABI3 protein.
    ABI3 gene; abscisic acid insensitive gene; ABI3; ABI3 protein.

ATEXTA      X67421     1500bp    DNA      PLN      31-OCT-1997
    Arabidopsis thaliana extA gene.
    extA gene; extA.

ATGLP3      Y12673      796bp    RNA      PLN      31-OCT-1997
    A.thaliana mRNA for germin like protein 3.
    germin-like protein; glp3 gene; Glp3 protein; glp3; GLP3 protein.

ATGTRNAS    AJ002062     2190bp    RNA      PLN      27-OCT-1997
    Arabidopsis thaliana mRNA for glycyl-tRNA synthetase.
    glycyl-tRNA synthetase.

ATSGT       Z83833     2353bp    RNA      PLN      31-OCT-1997
    A.thaliana UDP-glucose:sterol glucosyltransferase.
    sgt gene; UDP-glucose:sterol glucosyltransferase; sgt.

ATU41295    U41295     1191bp    mRNA     PLN      28-OCT-1997
    Arabidopsis thaliana GTP binding protein (ARAC1) mRNA, complete cds.
    ARAC1; GTP binding protein.

ATU43026    U43026      841bp    mRNA     PLN      28-OCT-1997
    Arabidopsis thaliana Rac-like protein (ARAC2) mRNA, complete cds.
    ARAC2.

ATU43501    U43501     1162bp    DNA      PLN      28-OCT-1997
    Arabidopsis thaliana Rac-like protein (ARAC3) gene, complete cds.
    ARAC3; Rac-like protein.

ATU45236    U45236     1160bp    mRNA     PLN      28-OCT-1997
    Arabidopsis thaliana rac-like protein (ARAC4) mRNA, complete cds.
    ARAC4.

ATU49453    U49453     1934bp    mRNA     PLN      29-OCT-1997
    Arabidopsis thaliana FK506 binding protein FKBP62 (ROF1) mRNA, complete
     cds.
    ROF1; rof1.

ATU52350    U52350     1210bp    mRNA     PLN      28-OCT-1997
    Arabidopsis thaliana GTP-binding protein (ARAC5) mRNA, complete cds.
    ARAC5; GTP-binding protein.

ATU57838    U57838     4029bp    DNA      PLN      29-OCT-1997
    Arabidopsis thaliana FK506 binding protein FKBP62 (ROF1) gene, complete
     cds.
    ROF1; rof1.

ATU77381    U77381      984bp    mRNA     PLN      04-NOV-1997
    Arabidopsis thaliana WD-40 repeat protein (AtArcA) mRNA, complete cds.
    AtArcA; WD-40 repeat protein.

D89875      D89875     5705bp    DNA      PLN      30-OCT-1997
    Arabidopsis thaliana DNA for alternative oxidase (AOX1a and AOX1b gene),
     complete cds.
    AOX1a; AOX1b; alternative oxidase.

LECHLO      X79898     1886bp    DNA      PLN      27-OCT-1997
    L.errecta chloroplast DNA.
    chloroplast; psbA gene; rps19' gene; trnH gene; psbA; trnH; rps19.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/







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