New Arabidopsis DNA 22-Nov-1997
AtDB Project
arabidopsis-seq at genome.Stanford.EDU
Sat Nov 22 17:20:48 EST 1997
====================== New DNA Sequences =======================
AB004872 AB004872 2484bp DNA PLN 19-NOV-1997
Arabidopsis thaliana DNA for COR47, complete cds.
rd17; COR47.
AB008782 AB008782 2235bp mRNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for sulfate transporter, complete cds.
sulfate transporter.
AC003105 AC003105 100200bp DNA HTG 14-NOV-1997
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F18A8'
genomic sequence near marker 'B68'; HTGS phase 1, 5 unordered pieces.
HTG; HTGS_PHASE1.
AF030172 AF030172 1129bp DNA PLN 18-NOV-1997
Arabidopsis thaliana defender against cell death 2 (DAD2) gene, complete
cds.
DAD2; defender against cell death 2.
AF030228 AF030228 3493bp DNA PLN 18-NOV-1997
Arabidopsis thaliana T-DNA flanking sequence.
AF030289 AF030289 3371bp DNA PLN 16-NOV-1997
Arabidopsis thaliana protein phosphatase X isoform 1 (PPX1) gene,
complete cds.
PPX1; protein phosphatase X isoform 1.
AF030290 AF030290 2327bp DNA PLN 16-NOV-1997
Arabidopsis thaliana protein phosphatase X isoform 2 (PPX2) gene,
complete cds.
PPX2; protein phosphatase X isoform 2.
ATAJ2596 AJ002596 1285bp RNA PLN 18-NOV-1997
Arabidopsis thaliana mRNA for patatin-like protein.
patatin-like protein.
ATAJ2597 AJ002597 1536bp RNA PLN 18-NOV-1997
Arabidopsis thaliana mRNA for membrane-associated salt-inducible protein
like.
membrane-associated protein; salt-inducible protein; membrane-associated
salt-inducible protein like.
ATAJ2598 AJ002598 815bp RNA PLN 18-NOV-1997
Arabidopsis thaliana mRNA for TINY-like protein.
TINY-like protein.
ATAJ2892 AJ002892 678bp RNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for glycine-rich RNA-binding protein (AtGRP2).
glycine-rich protein; GRP2 gene; RNA-binding protein; AtGRP2.
ATARGSG6 Z98759 4431bp DNA PLN 18-NOV-1997
Arabidopsis thaliana gene encoding arginyl-tRNA synthetase, clone G6.
arginyl-tRNA synthetase.
ATARGSG7 Z98760 5975bp DNA PLN 18-NOV-1997
Arabidopsis thaliana gene encoding arginyl-tRNA synthetase, clone G7.
arginyl-tRNA synthetase.
ATFERROCH Y13156 1797bp RNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for ferrochelatase.
ferrochelatase.
ATU49072 U49072 1169bp mRNA PLN 15-NOV-1997
Arabidopsis thaliana early auxin-induced (IAA16) mRNA, complete cds.
IAA16.
ATU49073 U49073 971bp mRNA PLN 15-NOV-1997
Arabidopsis thaliana early auxin-induced (IAA17) mRNA, complete cds.
IAA17.
ATU49074 U49074 980bp mRNA PLN 15-NOV-1997
Arabidopsis thaliana early auxin-induced (IAA18) mRNA, partial cds.
IAA18.
ATU49075 U49075 620bp mRNA PLN 15-NOV-1997
Arabidopsis thaliana early auxin-induced (IAA19) mRNA, partial cds.
IAA19.
ATU49076 U49076 624bp mRNA PLN 15-NOV-1997
Arabidopsis thaliana early auxin-induced (IAA20) mRNA, partial cds.
IAA20.
ATU49077 U49077 1311bp mRNA PLN 15-NOV-1997
Arabidopsis thaliana early auxin-induced (IAA21) mRNA, partial cds.
IAA21.
ATU79555 U79555 1935bp mRNA PLN 15-NOV-1997
Arabidopsis thaliana IAA23 mRNA, partial cds.
IAA23.
ATU79556 U79556 2690bp mRNA PLN 15-NOV-1997
Arabidopsis thaliana IAA24 mRNA, partial cds.
IAA24.
ATU79557 U79557 1631bp mRNA PLN 15-NOV-1997
Arabidopsis thaliana IAA25 mRNA, partial cds.
IAA25.
==================== Updated DNA Sequences =====================
AC002391 AC002391 108881bp DNA HTG 19-NOV-1997
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20D16'
genomic sequence near marker 'CIC06C07'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC002560 AC002560 101158bp DNA PLN 13-NOV-1997
Genomic sequence for Arabidopsis thaliana BAC F21B7, complete sequence.
HTG.
AC002561 AC002561 64129bp DNA HTG 20-NOV-1997
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T24P15'
genomic sequence near marker 'EG05C12'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC003000 AC003000 92624bp DNA HTG 18-NOV-1997
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T5I7'
genomic sequence near marker 'CIC10A06'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
ATAC002409 AC002409 72839bp DNA PLN 17-NOV-1997
Arabidopsis thaliana chromosome II BAC T20B5 genomic sequence, complete
sequence.
HTG; T20B5.1; T20B5.2; T20B5.3; T20B5.4; putative
4-alpha-glucanotransferase; T20B5.5; T20B5.6; putative protein
phosphatase 2C; T20B5.7; putative kinase; T20B5.8; putative cysteine
proteinase inhibitor; T20B5.9; putative cytochrome P450; T20B5.10;
similar to Medicago nodulin N21; T20B5.11; T20B5.12; T20B5.13; putative
ubiquitin protease; T20B5.14; ethylene response sensor (ERS); T20B5.15;
similar to tgacg-specific DNA-binding protein; T20B5.16; T20B5.17.
ATAC002510 AC002510 91979bp DNA PLN 13-NOV-1997
Arabidopsis thaliana chromosome II BAC T32G6 genomic sequence, complete
sequence.
HTG; T32G6.1; putative UDP-N-acetylglucosamine--dolichyl-phosphate;
putative UDP-N-acetylglucosamine--dolichyl-phosphate
N-acetylglucosaminephosphotransferase; T32G6.2; putative small nuclear
ribonucleoprotein Prp4p; T32G6.3; T32G6.4; T32G6.5; putative esterase D;
T32G6.6; T32G6.7; T32G6.8; putative chloroplast envelope Ca2+-ATPase;
T32G6.9; putative zinc-finger protein; T32G6.10; T32G6.11; T32G6.12;
T32G6.13; T32G6.14; T32G6.15; transcription factor TFIIB; T32G6.16;
T32G6.17; T32G6.18; T32G6.19; T32G6.20; putative thioredoxin reductase;
T32G6.21; putative heat shock transcription factor; T32G6.22; putative
ABC transporter, 5' partial.
=========== Updated Sequence Features/Annotations =============
AC002329 AC002329 98102bp DNA PLN 18-NOV-1997
DNA sequence of Arabidopsis thaliana BAC F5J6 from chromosome IV,
complete sequence.
HTG; F5J6.1; hypothetical protein with weak similarity to S. cerevisiae
hypothetical protein PID:g1066493; F5J6.2; putative ligand-gated ion
channel protein; F5J6.3; putative mitochondrial phosphate translocator
protein; F5J6.4; predicted protein similar to S.pombe protein C5H10.03;
F5J6.5; CDPK6 (calmodulin-domain protein kinase isoform 6); F5J6.6;
hypothetical protein; F5J6.7; hypothetical protein similar to A.
thaliana protein F19K23.19; F5J6.8; hypothetical protein similar to
F5J6.10; F5J6.9; putative obtusifoliol 14-alpha demethylase; F5J6.10;
predicted protein of unknown function; F5J6.11; F5J6.12; cytosolic
ribosomal protein S4; F5J6.13; 3-hydroxy-3-methylglutaryl-CoA reductase
(HMG2 protein); F5J6.14; clathrin adaptor protein small chain subunit
(AP19 protein); F5J6.15; predicted glycosyl hydrolase; F5J6.16; putative
RNA/ssDNA-binding protein; F5J6.17; F5J6.18; NADPH thioredoxin
reductase; F5J6.19; Mlo-like protein; F5J6.19.1; predicted leucine-rich
protein; F5J6.20; F5J6.21; putative RING zinc-finger protein; F5J6.22;
hypothetical protein similar to T18A10.3; F5J6.23; putative Mlo-like
protein.
AF013627 AF013627 1393bp mRNA PLN 15-NOV-1997
Arabidopsis thaliana reversibly glycosylated polypeptide-1 (AtRGP) mRNA,
complete cds.
AtRGP; reversibly glycosylated polypeptide-1.
AF013628 AF013628 1401bp mRNA PLN 15-NOV-1997
Arabidopsis thaliana reversibly glycosylated polypeptide-2 (AtRGP) mRNA,
complete cds.
AtRGP; reversibly glycosylated polypeptide-2.
ATBFRUC4 X97749 2118bp RNA PLN 14-NOV-1997
A.thaliana mRNA for beta-fructosidase (vacuolar form).
beta-fructosidase; vacuolar protein; betafruct4.
ATGTRNAS AJ002062 Y15103 2190bp RNA PLN 20-NOV-1997
Arabidopsis thaliana mRNA for glycyl-tRNA synthetase.
glycyl-tRNA synthetase.
ATJ001148 AJ001148 3387bp DNA PLN 14-NOV-1997
Arabidopsis thaliana CBL1 gene.
cbl gene; CBL1.
ATKASIIIG Y11689 2640bp DNA PLN 14-NOV-1997
A.thaliana KAS III gene.
3-ketoacyl-acyl carrier protein synthase III; KAS III gene; KAS III.
ATP5CS2 Y09355 2440bp RNA PLN 15-NOV-1997
A.thaliana mRNA for pyrroline-5-carboxlyate synthetase.
P5CS2 gene; pyrroline-5-carboxlyate synthetase; P5CS2.
ATP5CSAGN X86777 2552bp RNA PLN 15-NOV-1997
A.thaliana mRNA for pyrroline-5-carboxylate synthetase A.
p5csA gene; pyrroline-5-carboxylate synthetase A; p5csA.
ATP5CSBGN X86778 5789bp DNA PLN 15-NOV-1997
A.thaliana p5csB gene.
p5csB gene; pyrroline-5-carboxylate synthetase B; p5csB.
ATU80185 U80185 1541bp mRNA PLN 19-NOV-1997
Arabidopsis thaliana pyruvate dehydrogenase E1 alpha subunit mRNA,
nuclear gene encoding plastid protein, complete cds.
pyruvate dehydrogenase E1 alpha subunit.
ATU80186 U80186 1441bp mRNA PLN 19-NOV-1997
Arabidopsis thaliana pyruvate dehydrogenase E1 beta subunit mRNA, nuclear
gene encoding plastid protein, complete cds.
pyruvate dehydrogenase E1 beta subunit.
ATY13173 Y13173 860bp RNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for proteasome subunit prct.
20S proteasome; multicatalytic endopeptidase; prct.
ATY13174 Y13174 600bp RNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for proteasome subunit prcfb.
20S proteasome; multicatalytic endopeptidase; prcfb.
ATY13175 Y13175 829bp RNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for proteasome subunit prcga.
20S proteasome; multicatalytic endopeptidase; prcga.
ATY13176 Y13176 1006bp RNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for proteasome subunit prc3.
20S proteasome; multicatalytic endopeptidase; prc3.
ATY13177 Y13177 866bp RNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for proteasome subunit prcfc.
20S proteasome; multicatalytic endopeptidase; prcfc.
ATY13178 Y13178 1068bp RNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for proteasome subunit prcfa.
20S proteasome; multicatalytic endopeptidase; prcfa.
ATY13179 Y13179 717bp RNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for proteasome subunit prc6b.
20S proteasome; multicatalytic endopeptidase; prc6b.
ATY13180 Y13180 740bp RNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for proteasome subunit prc6c.
20S proteasome; multicatalytic endopeptidase; prc6c.
ATY13181 Y13181 1016bp RNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for proteasome subunit prc9.
20S proteasome; multicatalytic endopeptidase; prc9.
ATY13182 Y13182 954bp RNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for proteasome subunit prc2b.
20S proteasome; multicatalytic endopeptidase; prc2b.
ATY13691 Y13691 976bp RNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for proteasome subunit prc1.
alpha subunit; endopeptidase; prc1 gene; proteosome; prc1; multicatalytic
endopeptidase complex, proteasome component, alpha subunit.
ATY13692 Y13692 753bp RNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for proteasome subunit prgb.
beta subunit; endopeptidase; prcgb gene; proteosome; prcgb;
multicatalytic endopeptidase complex, proteasome component, beta
subunit.
ATY13693 Y13693 958bp RNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for proteasome subunit prc8.
alpha subunit; endopeptidase; prc8 gene; proteosome; prc8; multicatalytic
endopeptidase complex, proteasome component, alpha subunit.
ATY13694 Y13694 946bp RNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for proteasome subunit prcd.
beta subunit; endopeptidase; prcd gene; proteosome precursor; prcd;
multicatalytic endopeptidase complex, proteasome precursor, beta
subunit.
ATY13695 Y13695 1031bp RNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for proteasome subunit prce.
beta subunit; endopeptidase; prce gene; proteosome precursor; prce;
multicatalytic endopeptidase complex, proteasome precursor, beta
subunit.
ATY13696 Y13696 600bp RNA PLN 14-NOV-1997
Arabidopsis thaliana mRNA for proteasome subunit prch.
beta subunit; endopeptidase; prch gene; proteosome; prch; multicatalytic
endopeptidase complex, proteasome component, beta subunit.
LECHLO X79898 1886bp DNA PLN 20-NOV-1997
Arabidopsis thaliana chloroplast DNA.
chloroplast; psbA gene; rps19' gene; trnH gene; psbA; trnH; rps19.
NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences. However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.
To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web servers for sequences:
BLAST & FASTA: http://genome-www.stanford.edu/Arabidopsis/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://www.nig.ac.jp/
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