New Arabidopsis DNA 22-Nov-1997

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Sat Nov 22 17:20:48 EST 1997


====================== New DNA Sequences =======================

AB004872    AB004872     2484bp    DNA      PLN      19-NOV-1997
    Arabidopsis thaliana DNA for COR47, complete cds.
    rd17; COR47.

AB008782    AB008782     2235bp    mRNA     PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for sulfate transporter, complete cds.
    sulfate transporter.

AC003105    AC003105   100200bp    DNA      HTG      14-NOV-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F18A8'
     genomic sequence near marker 'B68'; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AF030172    AF030172     1129bp    DNA      PLN      18-NOV-1997
    Arabidopsis thaliana defender against cell death 2 (DAD2) gene, complete
     cds.
    DAD2; defender against cell death 2.

AF030228    AF030228     3493bp    DNA      PLN      18-NOV-1997
    Arabidopsis thaliana T-DNA flanking sequence.

AF030289    AF030289     3371bp    DNA      PLN      16-NOV-1997
    Arabidopsis thaliana protein phosphatase X isoform 1 (PPX1) gene,
     complete cds.
    PPX1; protein phosphatase X isoform 1.

AF030290    AF030290     2327bp    DNA      PLN      16-NOV-1997
    Arabidopsis thaliana protein phosphatase X isoform 2 (PPX2) gene,
     complete cds.
    PPX2; protein phosphatase X isoform 2.

ATAJ2596    AJ002596     1285bp    RNA      PLN      18-NOV-1997
    Arabidopsis thaliana mRNA for patatin-like protein.
    patatin-like protein.

ATAJ2597    AJ002597     1536bp    RNA      PLN      18-NOV-1997
    Arabidopsis thaliana mRNA for membrane-associated salt-inducible protein
     like.
    membrane-associated protein; salt-inducible protein; membrane-associated
     salt-inducible protein like.

ATAJ2598    AJ002598      815bp    RNA      PLN      18-NOV-1997
    Arabidopsis thaliana mRNA for TINY-like protein.
    TINY-like protein.

ATAJ2892    AJ002892      678bp    RNA      PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for glycine-rich RNA-binding protein (AtGRP2).
    glycine-rich protein; GRP2 gene; RNA-binding protein; AtGRP2.

ATARGSG6    Z98759     4431bp    DNA      PLN      18-NOV-1997
    Arabidopsis thaliana gene encoding arginyl-tRNA synthetase, clone G6.
    arginyl-tRNA synthetase.

ATARGSG7    Z98760     5975bp    DNA      PLN      18-NOV-1997
    Arabidopsis thaliana gene encoding arginyl-tRNA synthetase, clone G7.
    arginyl-tRNA synthetase.

ATFERROCH   Y13156     1797bp    RNA      PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for ferrochelatase.
    ferrochelatase.

ATU49072    U49072     1169bp    mRNA     PLN      15-NOV-1997
    Arabidopsis thaliana early auxin-induced (IAA16) mRNA, complete cds.
    IAA16.

ATU49073    U49073      971bp    mRNA     PLN      15-NOV-1997
    Arabidopsis thaliana early auxin-induced (IAA17) mRNA, complete cds.
    IAA17.

ATU49074    U49074      980bp    mRNA     PLN      15-NOV-1997
    Arabidopsis thaliana early auxin-induced (IAA18) mRNA, partial cds.
    IAA18.

ATU49075    U49075      620bp    mRNA     PLN      15-NOV-1997
    Arabidopsis thaliana early auxin-induced (IAA19) mRNA, partial cds.
    IAA19.

ATU49076    U49076      624bp    mRNA     PLN      15-NOV-1997
    Arabidopsis thaliana early auxin-induced (IAA20) mRNA, partial cds.
    IAA20.

ATU49077    U49077     1311bp    mRNA     PLN      15-NOV-1997
    Arabidopsis thaliana early auxin-induced (IAA21) mRNA, partial cds.
    IAA21.

ATU79555    U79555     1935bp    mRNA     PLN      15-NOV-1997
    Arabidopsis thaliana IAA23 mRNA, partial cds.
    IAA23.

ATU79556    U79556     2690bp    mRNA     PLN      15-NOV-1997
    Arabidopsis thaliana IAA24 mRNA, partial cds.
    IAA24.

ATU79557    U79557     1631bp    mRNA     PLN      15-NOV-1997
    Arabidopsis thaliana IAA25 mRNA, partial cds.
    IAA25.

==================== Updated DNA Sequences =====================

AC002391    AC002391   108881bp    DNA      HTG      19-NOV-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20D16'
     genomic sequence near marker 'CIC06C07'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002560    AC002560   101158bp    DNA      PLN      13-NOV-1997
    Genomic sequence for Arabidopsis thaliana BAC F21B7, complete sequence.
    HTG.

AC002561    AC002561    64129bp    DNA      HTG      20-NOV-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T24P15'
     genomic sequence near marker 'EG05C12'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC003000    AC003000    92624bp    DNA      HTG      18-NOV-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T5I7'
     genomic sequence near marker 'CIC10A06'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

ATAC002409  AC002409    72839bp    DNA      PLN      17-NOV-1997
    Arabidopsis thaliana chromosome II BAC T20B5 genomic sequence, complete
     sequence.
    HTG; T20B5.1; T20B5.2; T20B5.3; T20B5.4; putative
     4-alpha-glucanotransferase; T20B5.5; T20B5.6; putative protein
     phosphatase 2C; T20B5.7; putative kinase; T20B5.8; putative cysteine
     proteinase inhibitor; T20B5.9; putative cytochrome P450; T20B5.10;
     similar to Medicago nodulin N21; T20B5.11; T20B5.12; T20B5.13; putative
     ubiquitin protease; T20B5.14; ethylene response sensor (ERS); T20B5.15;
     similar to tgacg-specific DNA-binding protein; T20B5.16; T20B5.17.

ATAC002510  AC002510    91979bp    DNA      PLN      13-NOV-1997
    Arabidopsis thaliana chromosome II BAC T32G6 genomic sequence, complete
     sequence.
    HTG; T32G6.1; putative UDP-N-acetylglucosamine--dolichyl-phosphate;
     putative UDP-N-acetylglucosamine--dolichyl-phosphate
     N-acetylglucosaminephosphotransferase; T32G6.2; putative small nuclear
     ribonucleoprotein Prp4p; T32G6.3; T32G6.4; T32G6.5; putative esterase D;
     T32G6.6; T32G6.7; T32G6.8; putative chloroplast envelope Ca2+-ATPase;
     T32G6.9; putative zinc-finger protein; T32G6.10; T32G6.11; T32G6.12;
     T32G6.13; T32G6.14; T32G6.15; transcription factor TFIIB; T32G6.16;
     T32G6.17; T32G6.18; T32G6.19; T32G6.20; putative thioredoxin reductase;
     T32G6.21; putative heat shock transcription factor; T32G6.22; putative
     ABC transporter, 5' partial.

=========== Updated Sequence Features/Annotations  =============

AC002329    AC002329    98102bp    DNA      PLN      18-NOV-1997
    DNA sequence of Arabidopsis thaliana BAC F5J6 from chromosome IV,
     complete sequence.
    HTG; F5J6.1; hypothetical protein with weak similarity to S. cerevisiae
     hypothetical protein PID:g1066493; F5J6.2; putative ligand-gated ion
     channel protein; F5J6.3; putative mitochondrial phosphate translocator
     protein; F5J6.4; predicted protein similar to S.pombe protein C5H10.03;
     F5J6.5; CDPK6 (calmodulin-domain protein kinase isoform 6); F5J6.6;
     hypothetical protein; F5J6.7; hypothetical protein similar to A.
     thaliana protein F19K23.19; F5J6.8; hypothetical protein similar to
     F5J6.10; F5J6.9; putative obtusifoliol 14-alpha demethylase; F5J6.10;
     predicted protein of unknown function; F5J6.11; F5J6.12; cytosolic
     ribosomal protein S4; F5J6.13; 3-hydroxy-3-methylglutaryl-CoA reductase
     (HMG2 protein); F5J6.14; clathrin adaptor protein small chain subunit
     (AP19 protein); F5J6.15; predicted glycosyl hydrolase; F5J6.16; putative
     RNA/ssDNA-binding protein; F5J6.17; F5J6.18; NADPH thioredoxin
     reductase; F5J6.19; Mlo-like protein; F5J6.19.1; predicted leucine-rich
     protein; F5J6.20; F5J6.21; putative RING zinc-finger protein; F5J6.22;
     hypothetical protein similar to T18A10.3; F5J6.23; putative Mlo-like
     protein.

AF013627    AF013627     1393bp    mRNA     PLN      15-NOV-1997
    Arabidopsis thaliana reversibly glycosylated polypeptide-1 (AtRGP) mRNA,
     complete cds.
    AtRGP; reversibly glycosylated polypeptide-1.

AF013628    AF013628     1401bp    mRNA     PLN      15-NOV-1997
    Arabidopsis thaliana reversibly glycosylated polypeptide-2 (AtRGP) mRNA,
     complete cds.
    AtRGP; reversibly glycosylated polypeptide-2.

ATBFRUC4    X97749     2118bp    RNA      PLN      14-NOV-1997
    A.thaliana mRNA for beta-fructosidase (vacuolar form).
    beta-fructosidase; vacuolar protein; betafruct4.

ATGTRNAS    AJ002062 Y15103     2190bp    RNA      PLN      20-NOV-1997
    Arabidopsis thaliana mRNA for glycyl-tRNA synthetase.
    glycyl-tRNA synthetase.

ATJ001148   AJ001148     3387bp    DNA      PLN      14-NOV-1997
    Arabidopsis thaliana CBL1 gene.
    cbl gene; CBL1.

ATKASIIIG   Y11689     2640bp    DNA      PLN      14-NOV-1997
    A.thaliana KAS III gene.
    3-ketoacyl-acyl carrier protein synthase III; KAS III gene; KAS III.

ATP5CS2     Y09355     2440bp    RNA      PLN      15-NOV-1997
    A.thaliana mRNA for pyrroline-5-carboxlyate synthetase.
    P5CS2 gene; pyrroline-5-carboxlyate synthetase; P5CS2.

ATP5CSAGN   X86777     2552bp    RNA      PLN      15-NOV-1997
    A.thaliana mRNA for pyrroline-5-carboxylate synthetase A.
    p5csA gene; pyrroline-5-carboxylate synthetase A; p5csA.

ATP5CSBGN   X86778     5789bp    DNA      PLN      15-NOV-1997
    A.thaliana p5csB gene.
    p5csB gene; pyrroline-5-carboxylate synthetase B; p5csB.

ATU80185    U80185     1541bp    mRNA     PLN      19-NOV-1997
    Arabidopsis thaliana pyruvate dehydrogenase E1 alpha subunit mRNA,
     nuclear gene encoding plastid protein, complete cds.
    pyruvate dehydrogenase E1 alpha subunit.

ATU80186    U80186     1441bp    mRNA     PLN      19-NOV-1997
    Arabidopsis thaliana pyruvate dehydrogenase E1 beta subunit mRNA, nuclear
     gene encoding plastid protein, complete cds.
    pyruvate dehydrogenase E1 beta subunit.

ATY13173    Y13173      860bp    RNA      PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for proteasome subunit prct.
    20S proteasome; multicatalytic endopeptidase; prct.

ATY13174    Y13174      600bp    RNA      PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for proteasome subunit prcfb.
    20S proteasome; multicatalytic endopeptidase; prcfb.

ATY13175    Y13175      829bp    RNA      PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for proteasome subunit prcga.
    20S proteasome; multicatalytic endopeptidase; prcga.

ATY13176    Y13176     1006bp    RNA      PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for proteasome subunit prc3.
    20S proteasome; multicatalytic endopeptidase; prc3.

ATY13177    Y13177      866bp    RNA      PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for proteasome subunit prcfc.
    20S proteasome; multicatalytic endopeptidase; prcfc.

ATY13178    Y13178     1068bp    RNA      PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for proteasome subunit prcfa.
    20S proteasome; multicatalytic endopeptidase; prcfa.

ATY13179    Y13179      717bp    RNA      PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for proteasome subunit prc6b.
    20S proteasome; multicatalytic endopeptidase; prc6b.

ATY13180    Y13180      740bp    RNA      PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for proteasome subunit prc6c.
    20S proteasome; multicatalytic endopeptidase; prc6c.

ATY13181    Y13181     1016bp    RNA      PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for proteasome subunit prc9.
    20S proteasome; multicatalytic endopeptidase; prc9.

ATY13182    Y13182      954bp    RNA      PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for proteasome subunit prc2b.
    20S proteasome; multicatalytic endopeptidase; prc2b.

ATY13691    Y13691      976bp    RNA      PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for proteasome subunit prc1.
    alpha subunit; endopeptidase; prc1 gene; proteosome; prc1; multicatalytic
     endopeptidase complex, proteasome component, alpha subunit.

ATY13692    Y13692      753bp    RNA      PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for proteasome subunit prgb.
    beta subunit; endopeptidase; prcgb gene; proteosome; prcgb;
     multicatalytic endopeptidase complex, proteasome component, beta
     subunit.

ATY13693    Y13693      958bp    RNA      PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for proteasome subunit prc8.
    alpha subunit; endopeptidase; prc8 gene; proteosome; prc8; multicatalytic
     endopeptidase complex, proteasome component, alpha subunit.

ATY13694    Y13694      946bp    RNA      PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for proteasome subunit prcd.
    beta subunit; endopeptidase; prcd gene; proteosome precursor; prcd;
     multicatalytic endopeptidase complex, proteasome precursor, beta
     subunit.

ATY13695    Y13695     1031bp    RNA      PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for proteasome subunit prce.
    beta subunit; endopeptidase; prce gene; proteosome precursor; prce;
     multicatalytic endopeptidase complex, proteasome precursor, beta
     subunit.

ATY13696    Y13696      600bp    RNA      PLN      14-NOV-1997
    Arabidopsis thaliana mRNA for proteasome subunit prch.
    beta subunit; endopeptidase; prch gene; proteosome; prch; multicatalytic
     endopeptidase complex, proteasome component, beta subunit.

LECHLO      X79898     1886bp    DNA      PLN      20-NOV-1997
    Arabidopsis thaliana chloroplast DNA.
    chloroplast; psbA gene; rps19' gene; trnH gene; psbA; trnH; rps19.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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