New Arabidopsis DNA 29-Nov-1997

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Sun Nov 30 20:48:09 EST 1997


====================== New DNA Sequences =======================

AC003113    AC003113    86393bp    DNA      HTG      26-NOV-1997
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F24O1; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC003114    AC003114    70289bp    DNA      HTG      24-NOV-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 clone
     T12M4; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AF030386    AF030386      632bp    mRNA     PLN      25-NOV-1997
    Arabidopsis thaliana NOI protein mRNA, complete cds.
    NOI protein.

AF031427    AF031427      968bp    mRNA     PLN      27-NOV-1997
    Arabidopsis thaliana Rho-like GTP binding protein (Rop6) mRNA, complete
     cds.
    Rop6; Rho-like GTP binding protein.

AF031958    AF031958      359bp    mRNA     PLN      26-NOV-1997
    Arabidopsis thaliana GCN5 homolog (GCN5) mRNA, partial cds.
    GCN5; GCN5 homolog.

AF032883    AF032883     2403bp    DNA      PLN      23-NOV-1997
    Arabidopsis thaliana DnaJ homolog AtJ3 (ATJ3) gene, complete cds.
    ATJ3; AtJ3.

AF034255    AF034255     1372bp    mRNA     PLN      27-NOV-1997
    Arabidopsis thaliana reversibly glycosylated polypeptide-3 (RGP) mRNA,
     complete cds.
    RGP; reversibly glycosylated polypeptide-3.

==================== Updated DNA Sequences =====================

AC002311    AC002311    85855bp    DNA      PLN      26-NOV-1997
    Arabidopsis thaliana chromosome I BAC T26J12 genomic sequence, complete
     sequence.
    HTG.

AC002505    AC002505   115851bp    DNA      HTG      24-NOV-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T9J22'
     genomic sequence near marker 'B68'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC003033    AC003033   106000bp    DNA      HTG      24-NOV-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T21L14'
     genomic sequence near marker 'TEn5'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

ATAC002391  AC002391   108881bp    DNA      PLN      26-NOV-1997
    Arabidopsis thaliana chromosome II BAC T20D16 genomic sequence, complete
     sequence.
    HTG; T20D16.1; T20D16.2; putative poly(A)-binding protein; T20D16.3;
     putative AP2 domain containing protein; T20D16.4; putative
     retrotransposon polyprotein; T20D16.5; putative elicitor response
     element binding protein (WRKY3); T20D16.6; putative Rer1 protein;
     T20D16.7; putative receptor protein kinase; T20D16.8; MYB-related
     protein; T20D16.9; putative cadmium-transporting ATPase; T20D16.10;
     T20D16.11; putative indole-3-acetate beta-glucosyltransferase;
     T20D16.12; T20D16.13; Ec protein homolog; T20D16.14; putative terpene
     synthase; T20D16.15; putative cytochrome P450; T20D16.16; T20D16.17;
     putative serine/threonine protein kinase; T20D16.18; T20D16.19;
     T20D16.20; similar to auxin-responsive GH3 protein; T20D16.21;
     T20D16.22; putative metal ion transporter (Nramp); T20D16.23; T20D16.24;
     putative proline-rich protein.

ATAC003000  AC003000    92624bp    DNA      PLN      26-NOV-1997
    Arabidopsis thaliana chromosome II BAC T5I7 genomic sequence, complete
     sequence.
    HTG; T5I7.1; T5I7.2; T5I7.3; Rubisco activase; T5I7.4; T5I7.5;
     ankyrin-like protein; T5I7.6; T5I7.7; putative mannose-1-phosphate
     guanyltransferase; T5I7.8; ribonuclease, RNS2; T5I7.9; T5I7.10;
     delta-1-pyrroline 5-carboxylase synthetase, P5C1; T5I7.11; T5I7.12;
     T5I7.13; T5I7.14; serine/threonine protein phosphatase PP1 isozyme 4
     (TOPP4); T5I7.15; putative cucumisin serine protease; T5I7.16; tRNA-Asp;
     T5I7.17; T5I7.18; myb-like protein.

=========== Updated Sequence Features/Annotations  =============

ATCOR47G    X90959     1260bp    DNA      PLN      23-NOV-1997
    A.thaliana cor47 gene.
    cor47 gene; dehydrin; cor47.

ATDLTI29G   X90958     1260bp    DNA      PLN      23-NOV-1997
    A.thaliana lti29 gene.
    dehydrin; lti29 gene; lti29.

ATGPCRECP   Y11278     1279bp    RNA      PLN      23-NOV-1997
    A.thaliana mRNA for putative G protein coupled receptor.
    G protein coupled receptor; putative G protein coupled receptor.

ATHATJ      L36113     1443bp    mRNA     PLN      21-NOV-1997
    Arabidopsis thaliana chaperone protein (atj) mRNA, complete cds.
    atj.

ATLRRPK     X97774     3334bp    RNA      PLN      21-NOV-1997
    A.thaliana mRNA for light represssible receptor protein kinase.
    lrrpk gene; serine-threonine protein kinase; transmembrane protein;
     lrrpk; light repressible receptor protein kinase.

ATU16246    U16246     1573bp    mRNA     PLN      21-NOV-1997
    Arabidopsis thaliana DnaJ homolog AtJ1 (atj) mRNA, complete cds.
    atj; AtJ1.

LECHLO      X79898     1886bp    DNA      PLN      23-NOV-1997
    Arabidopsis thaliana chloroplast DNA.
    chloroplast; psbA gene; rps19' gene; trnH gene; psbA; trnH; rps19.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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