New Arabidopsis DNA 04-Oct-1997

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Sun Oct 5 11:41:20 EST 1997


====================== New DNA Sequences =======================

AB004293    AB004293     1948bp    mRNA     PLN      22-SEP-1997
    Arabidopsis thaliana mRNA for SigB, complete cds.
    SigB; sigB.

AB005560    AB005560     1586bp    mRNA     PLN      31-JUL-1997
    Arabidopsis thaliana mRNA for AtGDI2, complete cds.
    AtGDI2.

AC002560    AC002560   101358bp    DNA      HTG      25-SEP-1997
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F21B7; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC002561    AC002561    61817bp    DNA      HTG      25-SEP-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T24P15'
     genomic sequence near marker 'EG05C12'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002983    AC002983   107183bp    DNA      PLN      29-SEP-1997
    A. thaliana BAC T3F12 from chromsome IV, likely from the long arm,
     complete sequence.
    HTG.

AC002986    AC002986   181927bp    DNA      HTG      29-SEP-1997
    *** SEQUENCING IN PROGRESS *** YUP8H12R; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AF001035    AF001035     4146bp    DNA      PLN      28-SEP-1997
    Arabidopsis thaliana ASF/SF2 homolog (SF2) gene, complete cds.
    SF2; ASF/SF2 homolog.

AF008125    AF008125    10463bp    DNA      PLN      02-OCT-1997
    Arabidopsis thaliana multidrug resistance-associated protein homolog
     gene, complete cds.
    multidrug resistance-associated protein homolog.

AF014960    AF014960     5574bp    mRNA     PLN      27-SEP-1997
    Arabidopsis thaliana multidrug resistance-associated protein 1 (ATMRP1)
     mRNA, complete cds.
    ATMRP1; multidrug resistance-associated protein 1.

AF019637    AF019637     1726bp    mRNA     PLN      30-SEP-1997
    Arabidopsis thaliana putative amino acid or GABA permease mRNA, complete
     cds.
    putative amino acid or GABA permease.

AF019927    AF019927     1572bp    mRNA     PLN      30-SEP-1997
    Arabidopsis thaliana GSK3/shaggy-like protein kinase (GSK1) mRNA,
     complete cds.
    GSK1; GSK3/shaggy-like protein kinase.

AF020303    AF020303     3582bp    DNA      PLN      28-SEP-1997
    Arabidopsis thaliana fumarase (FUM1) gene, complete cds.
    FUM1; fumarase.

AF020433    AF020433     3726bp    DNA      PLN      28-SEP-1997
    Arabidopsis thaliana cyclophilin (CYP5) gene, complete cds.
    CYP5; cyclophilin.

AF020434    AF020434     2259bp    DNA      PLN      28-SEP-1997
    Arabidopsis thaliana cyclophilin (CYP2) gene, complete cds.
    CYP2; cyclophilin.

AF021244    AF021244     1188bp    mRNA     PLN      02-OCT-1997
    Arabidopsis thaliana coronatine-induced protein 1 (cor1) mRNA, complete
     cds.
    cor1; coronatine-induced protein 1.

ATAJ0053    AJ000053     2985bp    DNA      PLN      02-OCT-1997
    Arabidopsis thaliana ribA gene.
    ribA gene; ribA; GTP cyclohydrolase II /
     3,4-dihydroxy-2-butanone-4-phoshate synthase.

ATAMIDAS    Y10342     1705bp    RNA      PLN      02-OCT-1997
    A.thaliana mRNA for protein with homology to amidase.
    amidase; putative amidase.

ATAP21      Z99707   206419bp    DNA      PLN      02-OCT-1997
    Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1.
    cytochrome P450 homolog; hypothetical protein; Cu2+-transporting ATPase
     homolog; myb-related protein homolog; receptor protein kinase homolog;
     photosystem II oxygen-evolving complex protein homolog; nuclear
     histone-binding protein homolog; thiol-disulfide interchange protein
     homolog; selenium-binding protein homolog; pectinesterase; host response
     protein pir7a; patatin; patatin homolog; methionyl aminopeptidase
     homolog; caltractin; heat shock transcription factor HSF4; RNA-binding
     protein homolog; proteine kinase NPK1 homolog; hypoyhetical protein;
     APETALA2 protein; APETALA2 domain containing protein homolog; cysteine
     proteinase; homeotic gene BEL1 homolog.

ATAP22      Z99708   198552bp    DNA      PLN      02-OCT-1997
    Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2.
    hypothetical protein; geranylgeranyl pyrophosphate synthase;
     ubiquitin--protein ligase homolog; UTP-glucose glucosyltransferase;
     X-Pro aminopeptidase homolog; minor allergen; homeotic protein homolog;
     G-box-binding factor 1; SCARECROW homolog; globulin-like protein
     homolog; splicing factor homolog; leucin rich protein homolog;
     myo-inositol transport protein homolog; transcription initiation factor
     homolog; zinc finger protein homolog; seed maturation protein homolog;
     MADS-box protein homolog; 26S proteosome regulatory subunit 8 homolog;
     trichohyalin homolog; serine C-palmitoyltransferase homolog;
     mitogen-activated protein kinase 7; peroxidase homolog; ribosomal
     protein; ubiquitin-conjugating enzyme E2; actin interacting protein;
     cytochrome P450; beta-galactosidase; purple acid phosphatase.

ATDNADAL1   Y14851     8747bp    DNA      PLN      23-SEP-1997
    Arabidopsis thaliana dal1 gene.
    dal1 gene; dal1; DAL1 protein.

ATGLUTTR    Y12295      648bp    RNA      PLN      02-OCT-1997
    A.thaliana mRNA for gluthatione transferase.
    glutathione transferase; gst gene; gst.

ATOXA1      Y11871     1592bp    RNA      PLN      30-SEP-1997
    A.thaliana mRNA for oxa1-like gene.
    oxa1 gene; oxa1; Oxa1 protein.

ATPALGEN    X84728     2777bp    DNA      PLN      30-SEP-1997
    A.thaliana PAL gene.
    PAL gene; phenylalanine ammonia-lyase; PAL.

ATRNADAL1   Y14850     1004bp    RNA      PLN      23-SEP-1997
    Arabidopsis thaliana mRNA for DAL1 protein.
    dal1 gene; dal1; DAL1 protein.

ATSGT       Z83833     2353bp    RNA      PLN      02-OCT-1997
    A.thaliana UDP-glucose:sterol glucosyltransferase.
    sgt gene; UDP-glucose:sterol glucosyltransferase; sgt.

ATSPL3      Y09427      624bp    RNA      PLN      30-SEP-1997
    A.thaliana mRNA for squamosa-promoter binding protein like 3.
    SPL3 gene; squamosa-promoter binding protein like 3; SPL3.

ATU69134    U69134     3319bp    DNA      PLN      01-OCT-1997
    Arabidopsis thaliana cytochrome P450 monooxygenase (CYP83) gene, complete
     cds.
    CYP83; cytochrome P450 monooxygenase.

ATU73175    U73175     1499bp    mRNA     PLN      03-OCT-1997
    Arabidopsis thaliana carbamoyl phosphate synthetase small subunit mRNA
     (carA), complete cds.
    carA; carbamoyl phosphate synthetase small subunit.

ATU80185    U80185     1541bp    mRNA     PLN      01-OCT-1997
    Arabidopsis thaliana pyruvate dehydrogenase E1 alpha subunit mRNA,
     nuclear gene encoding plastid protein, complete cds.
    pyruvate dehydrogenase E1 alpha subunit.

ATU80186    U80186     1441bp    mRNA     PLN      01-OCT-1997
    Arabidopsis thaliana pyruvate dehydrogenase E1 beta subunit mRNA, nuclear
     gene encoding plastid protein, complete cds.
    pyruvate dehydrogenase E1 beta subunit.

ATX98543    X98543     6000bp    DNA      PLN      23-SEP-1997
    A.thaliana endo-1,4-beta-glucanase gene.
    endo-1,4-beta-glucanase; egase.

ATX98544    X98544     1479bp    RNA      PLN      23-SEP-1997
    A.thaliana mRNA for endo-1,4-beta-glucanase.
    endo-1,4-beta-glucanase; egase.

D86122      D86122     3587bp    mRNA     PLN      19-SEP-1997
    Arabidopsis thaliana mRNA for Mei2-like protein, complete cds.
    Mei2-like protein.

D89993      D89993     1828bp    mRNA     PLN      22-SEP-1997
    Arabidopsis thaliana mRNA for SigA, complete cds.
    SigA; sigA.

D89994      D89994     2002bp    mRNA     PLN      01-OCT-1997
    Arabidopsis thaliana mRNA for SigC, complete cds.
    SigC; sigC.

==================== Updated DNA Sequences =====================

AC002387    AC002387   132594bp    DNA      HTG      30-SEP-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F4L23'
     genomic sequence near marker 'CIC02E07'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002396    AC002396   122363bp    DNA      HTG      02-OCT-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC F3I6
     genomic sequence; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002521    AC002521    89345bp    DNA      HTG      02-OCT-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20F6'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

ATU69138    U69138     1177bp    mRNA     PLN      30-SEP-1997
    Arabidopsis thaliana ascorbate peroxidase 3 (APX3) mRNA, complete cds.
    APX3; ascorbate peroxidase 3.

=========== Updated Sequence Features/Annotations  =============

AC002292    AC002292   120787bp    DNA      PLN      02-OCT-1997
    Genomic sequence of Arabidopsis BAC F8A5, complete sequence.
    HTG; F8A5.1; F8A5.2; F8A5.3; putative ADP-ribolylation factor; F8A5.4;
     Phosphatidylinositol 3-kinase; F8A5.5; F8A5.6; F8A5.7; F8A5.8; F8A5.9;
     Putative enoyl-CoA hydratase/isomerase; F8A5.10; F8A5.11; tRNA-Gly;
     F8A5.12; putative polygalacturonase; F8A5.13; F8A5.14; RNA polymerase
     subunit (isoform B); F8A5.15; putative receptor kinase; F8A5.16;
     F8A5.17; putative RNA-binding protein; F8A5.18; Putative Cytochrome B5;
     F8A5.19; F8A5.20; F8A5.21; F8A5.22; F8A5.23; F8A5.24; F8A5.25; F8A5.26;
     F8A5.27; F8A5.28; F8A5.29; putative Clathrin Coat Assembly protein;
     F8A5.30; F8A5.31; Putative Serine/Threonine protein kinase; F8A5.32.

AC002294    AC002294   103338bp    DNA      PLN      29-SEP-1997
    Arabidopsis thaliana chromosome I BAC F11P17 genomic sequence, complete
     sequence.
    HTG; F11P17.1; amino acid permease; F11P17.2; F11P17.3; F11P17.4;
     F11P17.5; F11P17.6; F11P17.7; F11P17.8; F11P17.9; F11P17.10; F11P17.11;
     F11P17.12; F11P17.13; F11P17.14; F11P17.15; F11P17.16; F11P17.17;
     F11P17.18.

ATAAAA      Y12780     2190bp    RNA      PLN      25-SEP-1997
    A.thaliana mRNA for ATPase, partial.
    AAA gene; ATPase; AAA.

ATAF000657  AF000657    92948bp    DNA      PLN      03-OCT-1997
    Arabidopsis thaliana BAC F19G10, complete sequence.
    HTG; F19G10.1; F10G19.2; F10G19.3; F19G10.4; F19G10.5; F19G10.6;
     F19G10.7; F19G10.8; F19G10.9; F19G10.10; probable thiamin biosynthetic
     enzyme; F19G10.11; F19G10.12; similar to Jun activation domain binding
     protein; F19G10.13; F19G10.14; F19G10.15; F19G10.16; beta-glucanase;
     F19G10.17; F19G10.18; F29G20.19; F19G10.20; cytochrome C; F19G10.21.

ATKASIIIG   Y11689     2640bp    DNA      PLN      02-OCT-1997
    A.thaliana KAS III gene.
    3-ketoacyl-acyl carrier protein synthase III; KAS III gene; KAS III.

ATKNAT3     X92392     1751bp    RNA      PLN      25-SEP-1997
    A.thaliana mRNA for KNAT3 homeobox protein.
    KNAT3 homeobox gene; KNAT3 homeobox protein.

ATKNAT4     X92393     1501bp    RNA      PLN      25-SEP-1997
    A.thaliana mRNA for KNAT4 homeobox protein.
    KNAT4 homeobox gene; KNAT4 homeobox protein.

ATKNAT5     X92394      634bp    RNA      PLN      25-SEP-1997
    A.thaliana mRNA for KNAT5 homeobox protein.
    KNAT5 homeobox gene; KNAT5 homeobox protein.

ATU81598    U81598     1480bp    DNA      PLN      03-OCT-1997
    Arabidopsis thaliana RING zinc finger protein (A-RZF) gene, complete cds.
    A-RZF; RING zinc finger protein.

ATU88045    U88045     1183bp    mRNA     PLN      29-SEP-1997
    Arabidopsis thaliana syntaxin related protein AtVam3p (AtVAM3) mRNA,
     complete cds.
    AtVAM3; syntaxin related protein AtVam3p.


To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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