New Arabidopsis DNA 11-Oct-1997

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Sun Oct 12 14:50:47 EST 1997


====================== New DNA Sequences =======================

AB003175    AB003175     3538bp    DNA      PLN      08-OCT-1997
    Arabidopsis thaliana DNA for alternative oxidase (AOX1c gene), complete
     cds.
    AOX1c; alternative oxidase.

AB003176    AB003176     2607bp    DNA      PLN      08-OCT-1997
    Arabidopsis thaliana DNA for alternative oxidase (AOX2 gene), complete
     cds.
    AOX2; alternative oxidase.

AC003000    AC003000   115050bp    DNA      HTG      07-OCT-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T5I7'
     genomic sequence near marker 'CIC10A06'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AF024648    AF024648     3330bp    mRNA     PLN      07-OCT-1997
    Arabidopsis thaliana receptor-like serine/threonine kinase (RKF1) mRNA,
     complete cds.
    RKF1; receptor-like serine/threonine kinase.

AF024649    AF024649     2160bp    mRNA     PLN      07-OCT-1997
    Arabidopsis thaliana receptor-like serine/threonine kinase (RKF2) mRNA,
     complete cds.
    RKF2; receptor-like serine/threonine kinase.

AF024650    AF024650     2010bp    mRNA     PLN      07-OCT-1997
    Arabidopsis thaliana receptor-like serine/threonine kinase (RKF3) mRNA,
     complete cds.
    RKF3; receptor-like serine/threonine kinase.

ATAJ1911    AJ001911      823bp    RNA      PLN      03-OCT-1997
    Arabidopsis thaliana mRNA for ethylene-responsive element binding
     protein.
    putative; EBP gene; ethylene-responsive element binding protein; EBP;
     putative Ckc2.

ATU48864    U48864     7054bp    DNA      PLN      09-OCT-1997
    Arabidopsis thaliana homeodomain protein (prha) gene, complete cds.
    prha; PRHA.

ATU76501    U76501      928bp    mRNA     PLN      09-OCT-1997
    Arabidopsis thaliana alcohol dehydrogenase (ATA1) mRNA, complete cds.
    ATA1; alcohol dehydrogenase.

ATU91509    U91509     1064bp    mRNA     PLN      09-OCT-1997
    Arabidopsis thaliana glycolate oxidase mRNA, partial cds.
    glycolate oxidase.

ATY12227    Y12227    24053bp    DNA      PLN      07-OCT-1997
    Arabidopsis thaliana DNA, 24 kb surrounding PFL locus.
    GTP-binding protein; hypothetical protein; poly(A) binding protein;
     ribosomal protein S18A; RPS18A gene; topoisomerase; putative
     topoisomerase; GTP-binding protein Rab7; polyA binding protein PAB3;
     ribosomal protein S18A.

ATY12776    Y12776    38483bp    DNA      PLN      07-OCT-1997
    Arabidopsis thaliana DNA, 40 kb surrounding ACS1 locus.
    4,5 PIP kinase; ACC synthase; dehydrogenase; hypothetical protein; Lea
     protein; MADS-box protein; MYB-related protein; putative kinase;
     ACC-synthase; LEA protein.

D43962      D43962     1535bp    mRNA     PLN      01-OCT-1997
    Arabidopsis thaliana mRNA for homeodomein containing protein 1, complete
     cds.
    homeobox; homeodomein containing protein 1; ATH1.

D89875      D89875     5705bp    DNA      PLN      08-OCT-1997
    Arabidopsis thaliana DNA for alternative oxidase (AOX1a and AOX1b gene),
     complete cds.
    AOX1a; AOX1b; alternative oxidase.

==================== Updated DNA Sequences =====================

AC002291    AC002291    96642bp    DNA      PLN      07-OCT-1997
    Arabidopsis thaliana chromosome I BAC F22K20 genomic sequence, complete
     sequence.
    HTG.

AC002391    AC002391   116174bp    DNA      HTG      09-OCT-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20D16'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002505    AC002505   125332bp    DNA      HTG      09-OCT-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T9J22'
     genomic sequence near marker 'B68'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC002521    AC002521    89685bp    DNA      HTG      07-OCT-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20F6'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002986    AC002986   181925bp    DNA      PLN      09-OCT-1997
    Arabidopsis thaliana chromosome 1 YAC yUP8H12R, complete sequence.
    HTG.

=========== Updated Sequence Features/Annotations  =============

AC002329    AC002329    98102bp    DNA      PLN      08-OCT-1997
    DNA sequence of Arabidopsis thaliana BAC F5J6 from chromosome IV,
     complete sequence.
    HTG; F5J6.1; hypothetical protein with weak similarity to S. cerevisiae
     hypothetical protein PID:g1066493; F5J6.2; putative ligand-gated ion
     channel protein; F5J6.3; putative mitochondrial phosphate translocator
     protein; F5J6.4; predicted protein of unknown function; F5J6.5; CDPK6
     (calmodulin-domain protein kinase isoform 6); F5J6.6; hypothetical
     protein; F5J6.7; hypothetical protein similar to A. thaliana protein
     F19K23.19; F5J6.8; hypothetical protein similar to F5J6.10; F5J6.9;
     putative obtusifoliol 14-alpha demethylase; F5J6.10; F5J6.11; F5J6.12;
     cytosolic ribosomal protein S4; F5J6.13; 3-hydroxy-3-methylglutaryl-CoA
     reductase (HMG2 protein); F5J6.14; clathrin adaptor protein small chain
     subunit (AP19 protein); F5J6.15; predicted glycosyl hydrolase; F5J6.16;
     F5J6.17; F5J6.18; NADPH thioredoxin reductase; F5J6.19; Mlo-like
     protein; F5J6.19.1; predicted leucine-rich protein; F5J6.20; F5J6.21;
     putative RING zinc-finger protein; F5J6.22; F5J6.23; putative Mlo-like
     protein.

AF009647    AF009647     2448bp    mRNA     PLN      07-OCT-1997
    Arabidopsis thaliana arginine decarboxylase (spe2) mRNA, complete cds.
    spe2; arginine decarboxylase.

AF013465    AF013465     3099bp    DNA      PLN      07-OCT-1997
    Arabidopsis thaliana bHLH protein (Atmyc-146) gene, complete cds.
    Atmyc-146; bHLH protein.

ATU69533    U69533     1942bp    mRNA     PLN      06-OCT-1997
    Arabidopsis thaliana AtKAP alpha mRNA, complete cds.
    AtKAP alpha.

ATU79959    U79959     2286bp    mRNA     PLN      06-OCT-1997
    Arabidopsis thaliana vacuolar sorting receptor homolog mRNA, complete
     cds.
    vacuolar sorting receptor homolog.

ATU79960    U79960     2290bp    mRNA     PLN      06-OCT-1997
    Arabidopsis thaliana vacuolar sorting receptor homolog mRNA, complete
     cds.
    vacuolar sorting receptor homolog.

TM017A05    AF024504    78344bp    DNA      PLN      09-OCT-1997
    Arabidopsis thaliana BAC TM017A05.
    A_TM017A05.5; tRNA-Ile; ARAC1; Arabidopsis thaliana GTP-binding protein
     (ARAC1) (NID:g1292907); A_TM017A05.7; A_TM017A05.4; A_TM017A05.8;
     A_TM017A05.3; A_TM017A05.9; A_TM017A05.10; A_TM017A05.2; A_TM017A05.11;
     A_TM017A05.12; A_TM017A05.1.


To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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