New Arabidopsis DNA 25-Oct-1997

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Sat Oct 25 19:49:35 EST 1997


====================== New DNA Sequences =======================

AB007644    AB007644    73840bp    DNA      PLN      23-OCT-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K19P17,
     complete sequence.
    HTG.

AB007645    AB007645    72698bp    DNA      PLN      23-OCT-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K8K14,
     complete sequence.
    HTG.

AB007646    AB007646    37225bp    DNA      PLN      23-OCT-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MGI19, complete
     sequence.
    HTG.

AB007647    AB007647    78369bp    DNA      PLN      23-OCT-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MJB21, complete
     sequence.
    HTG.

AB007648    AB007648    76329bp    DNA      PLN      23-OCT-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MKD15, complete
     sequence.
    HTG.

AB007649    AB007649    58527bp    DNA      PLN      23-OCT-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MLE2, complete
     sequence.
    HTG.

AB007650    AB007650    65465bp    DNA      PLN      23-OCT-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MUA22, complete
     sequence.
    HTG.

AB007651    AB007651    85421bp    DNA      PLN      23-OCT-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MWD9, complete
     sequence.
    HTG.

AC003027    AC003027   118816bp    DNA      HTG      22-OCT-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
     F21M11 genomic sequence; HTGS phase 1, 13 unordered pieces.
    HTG; HTGS_PHASE1.

AC003028    AC003028   121812bp    DNA      HTG      22-OCT-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F16M14'
     genomic sequence near marker 've018'; HTGS phase 1, 22 unordered pieces.
    HTG; HTGS_PHASE1.

AF025302    AF025302     1200bp    mRNA     PLN      22-OCT-1997
    Arabidopsis thaliana putative aldolase mRNA, complete cds.
    putative aldolase.

AF026549    AF026549     3039bp    mRNA     PLN      20-OCT-1997
    Arabidopsis thaliana DNA mismatch repair protein MSH2 (MSH2) mRNA,
     complete cds.
    MSH2; DNA mismatch repair protein MSH2.

ATABI2      Y11840     1636bp    DNA      PLN      24-OCT-1997
    Arabidopsis thaliana ABI2 gene.
    ABI2 gene; ABI2.

ATAJ2020    AJ002020      306bp    RNA      PLN      09-OCT-1997
    Arabidopsis thaliana mRNA for proton pump interactor, partial.
    ppi gene; proton pump interactor; ppi.

ATGTRNAS    AJ002062     2190bp    RNA      PLN      24-OCT-1997
    Arabidopsis thaliana mRNA for glycyl-tRNA synthetase.
    glycyl-tRNA synthetase.

ATSIG1      Y14252     1903bp    RNA      PLN      09-OCT-1997
    Arabidopsis thaliana mRNA for plastid RNA polymerase sigma factor.
    plastid RNA polymerase sigma factor; sig1 gene; sig1.

==================== Updated DNA Sequences =====================

AC003000    AC003000   115000bp    DNA      HTG      20-OCT-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T5I7'
     genomic sequence near marker 'CIC10A06'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

ATU49971    U49971      843bp    DNA      PLN      23-OCT-1997
    Arabidopsis thaliana GTP binding protein Rop1At (Rop1At) mRNA, complete
     cds.
    Rop1At; GTP binding protein Rop1At.

=========== Updated Sequence Features/Annotations  =============

AC002354    AC002354    94636bp    DNA      PLN      24-OCT-1997
    Arabidopsis thaliana BAC F6P23 from chromosome IV, top arm, complete
     sequence.
    HTG; F6P23.1; putative tetracycline transporter-like protein; F6P23.2;
     F6P23.3; predicted protein of unknown function; F6P23.4; F6P23.6;
     F6P23.7; putative NAM/no apical meristem protein; F6P23.8; F6P23.9;
     F6P23.10; F6P23.10.1; F6P23.11; F6P23.12; putative bZIP-like
     transcription factor; F6P23.13; F6P23.14; NAD+ dependent isocitrate
     dehydrogenase subunit 2; F6P23.14.1; F6P23.15; hypothetical protein;
     F6P23.16.

AF012656    AF012656     2550bp    DNA      PLN      25-OCT-1997
    Arabidopsis thaliana putative potassium transporter AtKT1p (AtKT1) gene,
     complete cds.
    AtKT1; putative potassium transporter; putative potassium transporter
     AtKT1p.

AF012657    AF012657     2451bp    mRNA     PLN      25-OCT-1997
    Arabidopsis thaliana putative potassium transporter AtKT2p (AtKT2) mRNA,
     complete cds.
    AtKT2; putative potassium transporter AtKT2p.

AF012658    AF012658     1184bp    mRNA     PLN      25-OCT-1997
    Arabidopsis thaliana putative potassium transporter AtKT3p (AtKT3) mRNA,
     partial cds.
    AtKT3; putative potassium transporter AtKT3p.

AF012659    AF012659      935bp    mRNA     PLN      25-OCT-1997
    Arabidopsis thaliana putative potassium transporter AtKT4p (AtKT4) mRNA,
     partial cds.
    AtKT4; putative potassium transporter AtKT4p.

AF012660    AF012660      385bp    mRNA     PLN      25-OCT-1997
    Arabidopsis thaliana putative potassium transporter AtKT5p (AtKT5) mRNA,
     partial cds.
    AtKT5; putative potassium transporter AtKT5p.

ATBETAFRU   X99111    11937bp    DNA      PLN      09-OCT-1997
    A.thaliana gene coding for beta-fructosidase.
    beta-fructosidase.

ATBFRUC4    X97749     2118bp    RNA      PLN      09-OCT-1997
    A.thaliana mRNA for beta-fructosidase (vacuolar form).
    beta-fructosidase; vacuolar protein; betafruct4.

ATBFRUC     X95537     2092bp    RNA      PLN      09-OCT-1997
    A.thaliana mRNa for beta-fructosidase.
    beta-fructosidase.

ATBFRUCT4   Y11559     4207bp    DNA      PLN      09-OCT-1997
    A.thaliana bfruct4 gene.
    beta-fructosidase; bfruct4 gene; vacuolar invertase; bfruct4.

ATBFRUCT    X89454     1960bp    RNA      PLN      09-OCT-1997
    A.thaliana mRNA for Beta-fructosidase.
    beta-fructofuranosidase; beta-fructosidase; Beta-fruct.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the Web.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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