New Arabidopsis DNA 13-Sep-1997 1/3
AtDB Project
arabidopsis-seq at genome.Stanford.EDU
Thu Sep 18 20:40:31 EST 1997
====================== New DNA Sequences =======================
AC002521 AC002521 88549bp DNA HTG 05-SEP-1997
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20F06'
genomic sequence near marker 'CIC11A04'; HTGS phase 1, 3 unordered
pieces.
HTG; HTGS_PHASE1.
AC002534 AC002534 101371bp DNA PLN 11-SEP-1997
Arabidopsis thaliana BAC T32N15 from chromsome V, complete sequence.
HTG; T32N15.1; hypothetical protein; T32N15.3; T32N15.4; T32N15.5;
T32N15.6; T32N15.7; hypothetical protein with predicted heme-binding
domain; T32N15.8; putative histone deacetylase mRNA; putative histone
deacetylase; T32N15.9; similar to glycyl tRNA synthetase; T32N15.10;
putative kinesin-like protein; T32N15.11; putative chloroplast
prephenate dehydratase; T32N15.12.
AC002535 AC002535 103984bp DNA HTG 11-SEP-1997
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T30B22'
genomic sequence near marker 'CIC06C03'; HTGS phase 1, 2 unordered
pieces.
HTG; HTGS_PHASE1.
AF012656 AF012656 2550bp DNA PLN 10-SEP-1997
Arabidopsis thaliana putative potassium transporter (AtKT1) gene,
complete cds.
AtKT1; putative potassium transporter.
AF012657 AF012657 2451bp mRNA PLN 10-SEP-1997
Arabidopsis thaliana putative potassium transporter KT2p (KT2) mRNA,
complete cds.
KT2; putative potassium transporter KT2p.
AF012658 AF012658 1184bp mRNA PLN 10-SEP-1997
Arabidopsis thaliana putative potassium transporter KT3p (KT3) mRNA,
partial cds.
KT3; putative potassium transporter KT3p.
AF012659 AF012659 935bp mRNA PLN 10-SEP-1997
Arabidopsis thaliana putative potassium transporter KT4p (KT4) mRNA,
partial cds.
KT4; putative potassium transporter KT4p.
AF012660 AF012660 385bp mRNA PLN 10-SEP-1997
Arabidopsis thaliana putative potassium transporter KT5p (KT5) mRNA,
partial cds.
KT5; putative potassium transporter KT5p.
AF017056 AF017056 4700bp DNA PLN 12-SEP-1997
Arabidopsis thaliana brassinosteroid insensitive 1 (BRI1) gene, complete
cds.
brassinosteroid insensitive 1; BRI1.
ATFPF1 Y11988 622bp RNA PLN 01-SEP-1997
A.thaliana FPF1 mRNA.
FPF1 gene; FPF1; FPF1 protein.
ATRADAIE AJ001100 4844bp DNA PLN 08-SEP-1997
Arabidopsis thaliana RAD51 gene, and Aie insertion element.
insertion element; RAD51 gene; Rad51-like protein; rad51.
ATRNASFB Y14567 1626bp RNA PLN 08-SEP-1997
Arabidopsis thaliana mRNA for sigma factor B.
sigB; sigma factor B; SigB; sigma factorB.
D85190 D85190 934bp mRNA PLN 03-SEP-1997
Arabidopsis thaliana mRNA for vegetative storage protein, complete cds.
vegetative storage protein; vsp.
D85191 D85191 921bp mRNA PLN 09-SEP-1997
Arabidopsis thaliana mRNA for vegetative storage protein, complete cds.
vsgetative storage protein; vsp; vegetative storage protein.
D85192 D85192 1024bp mRNA PLN 03-SEP-1997
Arabidopsis thaliana mRNA for transmembrane protein, complete cds.
transmembrane protein.
D85193 D85193 748bp mRNA PLN 04-SEP-1997
Arabidopsis thaliana mRNA, partial cds.
D85194 D85194 2200bp mRNA PLN 04-SEP-1997
Arabidopsis thaliana mRNA, partial cds.
==================== Updated DNA Sequences =====================
YUP8H12 AC000098 103576bp DNA PLN 10-SEP-1997
Arabidopsis thaliana chromosome 1 YAC yUP8H12 complete sequence.
HTG; YUP8H12.1; YUP8H12.2; YUP8H12.3; YUP8H12.4; YUP8H12.5; YUP8H12.6;
YUP8H12.7; YUP8H12.8; YUP8H12.9; YUP8H12.10; YUP8H12.11; YUP8H12.12;
YUP8H12.13; YUP8H12.14; YUP8H12.15; YUP8H12.16; YUP8H12.17; YUP8H12.18;
YUP8H12.19; YUP8H12.20; YUP8H12.21; YUP8H12.22; YUP8H12.23; YUP8H12.24;
YUP8H12.25; YUP8H12.26; YUP8H12.27.
AC002332 AC002332 152593bp DNA HTG 08-SEP-1997
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F04P09'
genomic sequence near marker 've015'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC002334 AC002334 93157bp DNA HTG 10-SEP-1997
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F25I18'
genomic sequence near marker 'TEn5'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC002336 AC002336 86011bp DNA HTG 05-SEP-1997
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T02P04'
genomic sequence near marker 'CIC10A06'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC002392 AC002392 107250bp DNA HTG 10-SEP-1997
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20K24'
genomic sequence near marker 'CIC06E08'; HTGS phase 1, 6 unordered
pieces.
HTG; HTGS_PHASE1.
AC002409 AC002409 80752bp DNA HTG 10-SEP-1997
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20B05'
genomic sequence near marker 'CIC11C08'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC002505 AC002505 121847bp DNA HTG 10-SEP-1997
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T09J22'
genomic sequence near marker 'B68'; HTGS phase 1, 5 unordered pieces.
HTG; HTGS_PHASE1.
ATU89267 U89267 1449bp mRNA PLN 11-SEP-1997
Arabidopsis thaliana p-hydroxyphenylpyruvate dioxygenase (HPD) mRNA,
complete cds.
HPD; p-hydroxyphenylpyruvate dioxygenase.
=========== Updated Sequence Features/Annotations =============
AB002560 AB002560 2217bp DNA PLN 03-JUL-1997
Arabidopsis thaliana DNA for CUC2, complete cds.
CUC2.
AB003041 AB003041 1529bp mRNA PLN 04-AUG-1997
Arabidopsis thaliana mRNA for O-acetylserine (thiol) lyase, complete cds.
cs26; O-acetylserine (thiol) lyase; cysteine synthase.
AB003280 AB003280 2127bp mRNA PLN 09-JUN-1997
Arabidopsis thaliana mRNA for Phosphoglycerate dehydrogenase, complete
cds.
Phosphoglycerate dehydrogenase.
AB003522 AB003522 1192bp DNA PLN 06-AUG-1997
Arabidopsis thaliana DNA for larger subunit of Rubisco, beta subunit of
coupling factor one, partial cds.
larger subunit of; beta subunit of coupling factor one; atpB; rbcL;
larger subunit of Rubisco.
AB004568 AB004568 954bp mRNA PLN 29-JUL-1997
Arabidopsis thaliana mRNA for cyanase, complete cds.
CYN; cyanase.
AB004796 AB004796 1201bp mRNA PLN 23-JUN-1997
Arabidopsis thaliana mRNA for mitogen activated protein kinase kinase,
partial cds.
mitogen activated protein kinase kinase; nMAPKK.
AB004798 AB004798 2113bp mRNA PLN 19-JUN-1997
Arabidopsis thaliana mRNA for ascorbate oxidase, partial cds.
ascorbate oxidase.
AB005230 AB005230 74613bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MAC12, complete
sequence.
HTG.
AB005231 AB005231 82766bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBB18, complete
sequence.
HTG.
AB005232 AB005232 80315bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBG8, complete
sequence.
HTG.
AB005233 AB005233 79837bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBK23, complete
sequence.
HTG.
AB005234 AB005234 89779bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBK5, complete
sequence.
HTG.
AB005235 AB005235 75475bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MED24, complete
sequence.
HTG.
AB005236 AB005236 82035bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MIK22, complete
sequence.
HTG.
AB005237 AB005237 87835bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MJJ3, complete
sequence.
HTG.
AB005238 AB005238 75188bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MKP11, complete
sequence.
HTG.
AB005239 AB005239 84544bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MLN1, complete
sequence.
HTG.
AB005240 AB005240 80770bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MOK16, complete
sequence.
HTG.
AB005241 AB005241 57892bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MOP10, complete
sequence.
HTG.
AB005242 AB005242 82001bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MQK4, complete
sequence.
HTG.
AB005243 AB005243 86065bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MRN17, complete
sequence.
HTG.
AB005244 AB005244 82415bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MRO11, complete
sequence.
HTG.
AB005245 AB005245 86630bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MUG13, complete
sequence.
HTG.
AB005246 AB005246 77999bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MUP24, complete
sequence.
HTG.
AB005247 AB005247 87841bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXA21, complete
sequence.
HTG.
AB005248 AB005248 83646bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MX110, complete
sequence.
HTG.
AB005249 AB005249 83599bp DNA PLN 17-JUL-1997
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXM12, complete
sequence.
HTG.
AB005295 AB005295 842bp mRNA PLN 04-JUL-1997
Arabidopsis thaliana mRNA for HY5, complete cds.
HY5.
AB005456 AB005456 842bp mRNA PLN 08-JUL-1997
Arabidopsis thaliana mRNA for HY5, complete cds.
HY5.
AB005779 AB005779 240bp DNA PLN 22-JUL-1997
Arabidopsis thaliana DNA for tRNA-Cys.
tRNA-Cys.
AB005780 AB005780 312bp DNA PLN 24-JUL-1997
Arabidopsis thaliana tRNA-Asp gene.
tRNA-Asp.
AB005781 AB005781 312bp DNA PLN 24-JUL-1997
Arabidopsis thaliana tRNA-Asp gene.
tRNA-Asp.
AB005782 AB005782 311bp DNA PLN 24-JUL-1997
Arabidopsis thaliana tRNA-Gly gene.
tRNA-Gly.
AB005783 AB005783 311bp DNA PLN 24-JUL-1997
Arabidopsis thaliana tRNA-Gly gene.
tRNA-Gly.
AB005784 AB005784 311bp DNA PLN 24-JUL-1997
Arabidopsis thaliana tRNA-Gly gene.
tRNA-Gly.
AB005785 AB005785 311bp DNA PLN 24-JUL-1997
Arabidopsis thaliana tRNA-Gly gene.
tRNA-Gly.
AB005786 AB005786 927bp DNA PLN 24-JUL-1997
Arabidopsis thaliana tRNA-Glu gene.
tRNA-Glu.
AB005888 AB005888 1033bp mRNA PLN 24-JUL-1997
Arabidopsis thaliana mRNA for ATMYB3, complete cds.
ATMYB3; Atmyb3.
AB005889 AB005889 1364bp mRNA PLN 24-JUL-1997
Arabidopsis thaliana mRNA for ATMYB4, complete cds.
ATMYB4; Atmyb4.
AC000103 AC000103 99383bp DNA PLN 24-JUN-1997
Genomic sequence for Arabidopsis thaliana BAC F21J9, complete sequence.
HTG; F21J9.1; F21J9.2; F21J9.3; F21J9.4; F21J9.5; F21J9.6; F21J9.7;
F21J9.8; F21J9.9; F21J9.10; F21J9.11; F21J9.12; F21J9.13; F21J9.14;
F21J9.15; F21J9.16; F21J9.17; F21J9.18; F21J9.19; F21J9.20; F21J9.21;
F21J9.22; F21J9.23; F21J9.24; F21J9.25; F21J9.26.
AC000348 AC000348 111390bp DNA PLN 24-JUN-1997
Genomic sequence for Arabidopsis thaliana BAC T7N9, complete sequence.
HTG; T7N9.1; T7N9.2; T7N9.3; T7N9.4; T7N9.5; T7N9.6; T7N9.7; T7N9.8;
T7N9.9; T7N9.10; T7N9.11; T7N9.12; T7N9.13; T7N9.14; T7N9.15; T7N9.16;
T7N9.17; T7N9.18; T7N9.19; T7N9.20; T7N9.21; T7N9.22; T7N9.23; T7N9.24;
T7N9.25.
AC002130 AC002130 114729bp DNA PLN 18-JUN-1997
Genomic sequence for Arabidopsis thaliana BAC F1N21, complete sequence.
HTG.
AC002292 AC002292 120787bp DNA PLN 11-JUL-1997
Genomic sequence of Arabidopsis BAC F8A5, complete sequence.
HTG.
AC002294 AC002294 103338bp DNA PLN 09-JUN-1997
Arabidopsis thaliana chromosome I, complete sequence.
HTG.
AC002329 AC002329 98102bp DNA PLN 17-JUL-1997
Arabidopsis thaliana chromosome IV, top arm, complete sequence.
HTG; F05J06.1; hypothetical protein with weak similarity to S. cerevisiae
hypothetical protein PID:g1066493; F05J06.2; putative ligand-gated ion
channel protein; F05J06.3; putative mitochondrial phosphate translocator
protein; F05J06.4; predicted protein of unknown function; F05J06.5;
CDPK6 (calmodulin-domain protein kinase isoform 6); F05J06.6;
hypothetical protein; F05J06.7; hypothetical protein similar to A.
thaliana protein F19K23.19; F05J06.8; hypothetical protein similar to
F05J06.10; F05J06.9; putative obtusifoliol 14-alpha demethylase;
F05J06.10; F05J06.11; F05J06.12; cytosolic ribosomal protein S4;
F05J06.13; 3-hydroxy-3-methylglutaryl-CoA reductase (HMG2 protein);
F05J06.14; clathrin adaptor protein small chain subunit (AP19 protein);
F05J06.15; predicted glycosyl hydrolase; F05J06.16; F05J06.17;
F05J06.18; NADPH thioredoxin reductase; F05J06.19; Mlo-like
protein/F05J06.19; F05J06.20; F05J06.21; putative RING zinc-finger
protein; F05J06.22; F05J06.23; putative Mlo-like protein/F05J06.23.
AC002330 AC002330 113566bp DNA PLN 24-JUL-1997
Arabidopsis thaliana BAC T10P11, complete sequence.
HTG; T10P11.1; predicted protein of unknown function; T10P11.2; T10P11.3;
sulfate transporter protein; T10P11.4; putative zinc-finger protein;
T10P11.5; T10P11.6; hypothetical protein; T10P11.7; putative protein
trafficking component; T10P11.8; T10P11.9; putative bZIP-like DNA
binding protein; T10P11.10; putative serine/threonine protein
kinase/T10P11.10; T10P11.11; putative tryptophan synthase alpha 1-like
protein; T10P11.12; putative Mlo-like protein/T10P11.12A; predicted
Mlo-like protein/T10P11.12B; T10P11.13; T10P11.14; predicted NADH
dehydrogenase 24 kDa subunit; T10P11.14.1; putative cullin-like 1
protein; T10P11.15; LUMINIDEPENDENS protein; T10P11.16; T10P11.17;
T10P11.18; glutathione S transferase; T10P11.19; putative chloroplast
outer envelope 86-like protein; T10P11.20.
AC002354 AC002354 94636bp DNA PLN 18-JUL-1997
Arabidopsis thaliana genomic sequence of BAC F06P23 from chromosome IV,
complete sequence.
HTG; F06P23.1; putative tetracycline transporter-like protein/F06P23.1;
F06P23.2; putative tetracyline transporter-like protein/F06P23.2B;
putative tetracycline transporter-like protein/F06P23.2A; F06P23.3;
predicted protein of unknown function; F06P23.4; hypothetical protein;
F06P23.5; putative leucine-rich protein/F06P23.5; F06P23.6; F06P23.7;
putative NAM/no apical meristem protein; F06P23.8; putative
disease-resistance protein/F06P23.8; F06P23.9; putative
disease-resistance protein/F06P23.9; F06P23.10; F06P23.11; F06P23.12;
putative B-ZIP-like transcription factor; F06P23.13; F06P23.14; NAD+
dependent isocitrate dehydrogenase subunit 2; F06P23.14.1; predicted
leucine-rich protein/F06P23.14.1; F06P23.16.
AF000977 AF000977 1348bp mRNA PLN 15-JUN-1997
Arabidopsis thaliana MEK1 mRNA, complete cds.
MEK1.
AF001414 AF001414 4429bp DNA PLN 02-JUL-1997
Arabidopsis thaliana 14-3-3-like protein GF14 phi (GRF4) gene, complete
cds.
GRF4; 14-3-3-like protein GF14 phi.
AF001415 AF001415 4362bp DNA PLN 02-JUL-1997
Arabidopsis thaliana 14-3-3-like protein GF14 phi (GRF5) gene, complete
cds.
GRF5; 14-3-3-like protein GF14 upsilon.
AF002678 AF002678 10000bp DNA PLN 28-JUN-1997
Arabidopsis thaliana kinesin-like protein (ZWICHEL) gene, complete cds.
ZWICHEL; kinesin-like protein.
AF003094 AF003094 729bp mRNA PLN 28-JUL-1997
Arabidopsis thaliana AP2 domain containing protein RAP2.1 mRNA, partial
cds.
AP2 domain containing protein RAP2.1.
AF003095 AF003095 1101bp mRNA PLN 28-JUL-1997
Arabidopsis thaliana AP2 domain containing protein RAP2.2 mRNA, partial
cds.
AP2 domain containing protein RAP2.2.
AF003096 AF003096 1055bp mRNA PLN 28-JUL-1997
Arabidopsis thaliana AP2 domain containing protein RAP2.3 mRNA, complete
cds.
AP2 domain containing protein RAP2.3.
AF003097 AF003097 969bp mRNA PLN 28-JUL-1997
Arabidopsis thaliana AP2 domain containing protein RAP2.4 mRNA, partial
cds.
AP2 domain containing protein RAP2.4.
AF003098 AF003098 937bp mRNA PLN 28-JUL-1997
Arabidopsis thaliana AP2 domain containing protein RAP2.5 mRNA, complete
cds.
AP2 domain containing protein RAP2.5.
AF003099 AF003099 651bp mRNA PLN 28-JUL-1997
Arabidopsis thaliana AP2 domain containing protein RAP2.6 mRNA, partial
cds.
AP2 domain containing protein RAP2.6.
AF003100 AF003100 1329bp mRNA PLN 28-JUL-1997
Arabidopsis thaliana AP2 domain containing protein RAP2.7 mRNA, partial
cds.
AP2 domain containing protein RAP2.7.
AF003101 AF003101 1113bp mRNA PLN 28-JUL-1997
Arabidopsis thaliana AP2 domain containing protein RAP2.8 mRNA, partial
cds.
AP2 domain containing protein RAP2.8.
AF003102 AF003102 417bp mRNA PLN 28-JUL-1997
Arabidopsis thaliana AP2 domain containing protein RAP2.9 mRNA, partial
cds.
AP2 domain containing protein RAP2.9.
AF003103 AF003103 814bp mRNA PLN 28-JUL-1997
Arabidopsis thaliana AP2 domain containing protein RAP2.10 mRNA, partial
cds.
AP2 domain containing protein RAP2.10.
AF003104 AF003104 933bp mRNA PLN 28-JUL-1997
Arabidopsis thaliana AP2 domain containing protein RAP2.11 mRNA, partial
cds.
AP2 domain containing protein RAP2.11.
AF003105 AF003105 1277bp mRNA PLN 28-JUL-1997
Arabidopsis thaliana AP2 domain containing protein RAP2.12 mRNA, partial
cds.
AP2 domain containing protein RAP2.12.
AF003728 AF003728 1030bp mRNA PLN 06-AUG-1997
Arabidopsis thaliana plasma membrane intrinsic protein (SIMIP) mRNA,
complete cds.
SIMIP; plasma membrane intrinsic protein.
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