New Arabidopsis DNA 13-Sep-1997 1/3

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Thu Sep 18 20:40:31 EST 1997


====================== New DNA Sequences =======================

AC002521    AC002521    88549bp    DNA      HTG      05-SEP-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20F06'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002534    AC002534   101371bp    DNA      PLN      11-SEP-1997
    Arabidopsis thaliana BAC T32N15 from chromsome V, complete sequence.
    HTG; T32N15.1; hypothetical protein; T32N15.3; T32N15.4; T32N15.5;
     T32N15.6; T32N15.7; hypothetical protein with predicted heme-binding
     domain; T32N15.8; putative histone deacetylase mRNA; putative histone
     deacetylase; T32N15.9; similar to glycyl tRNA synthetase; T32N15.10;
     putative kinesin-like protein; T32N15.11; putative chloroplast
     prephenate dehydratase; T32N15.12.

AC002535    AC002535   103984bp    DNA      HTG      11-SEP-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T30B22'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AF012656    AF012656     2550bp    DNA      PLN      10-SEP-1997
    Arabidopsis thaliana putative potassium transporter (AtKT1) gene,
     complete cds.
    AtKT1; putative potassium transporter.

AF012657    AF012657     2451bp    mRNA     PLN      10-SEP-1997
    Arabidopsis thaliana putative potassium transporter KT2p (KT2) mRNA,
     complete cds.
    KT2; putative potassium transporter KT2p.

AF012658    AF012658     1184bp    mRNA     PLN      10-SEP-1997
    Arabidopsis thaliana putative potassium transporter KT3p (KT3) mRNA,
     partial cds.
    KT3; putative potassium transporter KT3p.

AF012659    AF012659      935bp    mRNA     PLN      10-SEP-1997
    Arabidopsis thaliana putative potassium transporter KT4p (KT4) mRNA,
     partial cds.
    KT4; putative potassium transporter KT4p.

AF012660    AF012660      385bp    mRNA     PLN      10-SEP-1997
    Arabidopsis thaliana putative potassium transporter KT5p (KT5) mRNA,
     partial cds.
    KT5; putative potassium transporter KT5p.

AF017056    AF017056     4700bp    DNA      PLN      12-SEP-1997
    Arabidopsis thaliana brassinosteroid insensitive 1 (BRI1) gene, complete
     cds.
    brassinosteroid insensitive 1; BRI1.

ATFPF1      Y11988      622bp    RNA      PLN      01-SEP-1997
    A.thaliana FPF1 mRNA.
    FPF1 gene; FPF1; FPF1 protein.

ATRADAIE    AJ001100     4844bp    DNA      PLN      08-SEP-1997
    Arabidopsis thaliana RAD51 gene, and Aie insertion element.
    insertion element; RAD51 gene; Rad51-like protein; rad51.

ATRNASFB    Y14567     1626bp    RNA      PLN      08-SEP-1997
    Arabidopsis thaliana mRNA for sigma factor B.
    sigB; sigma factor B; SigB; sigma factorB.

D85190      D85190      934bp    mRNA     PLN      03-SEP-1997
    Arabidopsis thaliana mRNA for vegetative storage protein, complete cds.
    vegetative storage protein; vsp.

D85191      D85191      921bp    mRNA     PLN      09-SEP-1997
    Arabidopsis thaliana mRNA for vegetative storage protein, complete cds.
    vsgetative storage protein; vsp; vegetative storage protein.

D85192      D85192     1024bp    mRNA     PLN      03-SEP-1997
    Arabidopsis thaliana mRNA for transmembrane protein, complete cds.
    transmembrane protein.

D85193      D85193      748bp    mRNA     PLN      04-SEP-1997
    Arabidopsis thaliana mRNA, partial cds.

D85194      D85194     2200bp    mRNA     PLN      04-SEP-1997
    Arabidopsis thaliana mRNA, partial cds.

==================== Updated DNA Sequences =====================

YUP8H12     AC000098   103576bp    DNA      PLN      10-SEP-1997
    Arabidopsis thaliana chromosome 1 YAC yUP8H12 complete sequence.
    HTG; YUP8H12.1; YUP8H12.2; YUP8H12.3; YUP8H12.4; YUP8H12.5; YUP8H12.6;
     YUP8H12.7; YUP8H12.8; YUP8H12.9; YUP8H12.10; YUP8H12.11; YUP8H12.12;
     YUP8H12.13; YUP8H12.14; YUP8H12.15; YUP8H12.16; YUP8H12.17; YUP8H12.18;
     YUP8H12.19; YUP8H12.20; YUP8H12.21; YUP8H12.22; YUP8H12.23; YUP8H12.24;
     YUP8H12.25; YUP8H12.26; YUP8H12.27.

AC002332    AC002332   152593bp    DNA      HTG      08-SEP-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F04P09'
     genomic sequence near marker 've015'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002334    AC002334    93157bp    DNA      HTG      10-SEP-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F25I18'
     genomic sequence near marker 'TEn5'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002336    AC002336    86011bp    DNA      HTG      05-SEP-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T02P04'
     genomic sequence near marker 'CIC10A06'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002392    AC002392   107250bp    DNA      HTG      10-SEP-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20K24'
     genomic sequence near marker 'CIC06E08'; HTGS phase 1, 6 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002409    AC002409    80752bp    DNA      HTG      10-SEP-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20B05'
     genomic sequence near marker 'CIC11C08'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002505    AC002505   121847bp    DNA      HTG      10-SEP-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T09J22'
     genomic sequence near marker 'B68'; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

ATU89267    U89267     1449bp    mRNA     PLN      11-SEP-1997
    Arabidopsis thaliana p-hydroxyphenylpyruvate dioxygenase (HPD) mRNA,
     complete cds.
    HPD; p-hydroxyphenylpyruvate dioxygenase.

=========== Updated Sequence Features/Annotations  =============

AB002560    AB002560     2217bp    DNA      PLN      03-JUL-1997
    Arabidopsis thaliana DNA for CUC2, complete cds.
    CUC2.

AB003041    AB003041     1529bp    mRNA     PLN      04-AUG-1997
    Arabidopsis thaliana mRNA for O-acetylserine (thiol) lyase, complete cds.
    cs26; O-acetylserine (thiol) lyase; cysteine synthase.

AB003280    AB003280     2127bp    mRNA     PLN      09-JUN-1997
    Arabidopsis thaliana mRNA for Phosphoglycerate dehydrogenase, complete
     cds.
    Phosphoglycerate dehydrogenase.

AB003522    AB003522     1192bp    DNA      PLN      06-AUG-1997
    Arabidopsis thaliana DNA for larger subunit of Rubisco, beta subunit of
     coupling factor one, partial cds.
    larger subunit of; beta subunit of coupling factor one; atpB; rbcL;
     larger subunit of Rubisco.

AB004568    AB004568      954bp    mRNA     PLN      29-JUL-1997
    Arabidopsis thaliana mRNA for cyanase, complete cds.
    CYN; cyanase.

AB004796    AB004796     1201bp    mRNA     PLN      23-JUN-1997
    Arabidopsis thaliana mRNA for mitogen activated protein kinase kinase,
     partial cds.
    mitogen activated protein kinase kinase; nMAPKK.

AB004798    AB004798     2113bp    mRNA     PLN      19-JUN-1997
    Arabidopsis thaliana mRNA for ascorbate oxidase, partial cds.
    ascorbate oxidase.

AB005230    AB005230    74613bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MAC12, complete
     sequence.
    HTG.

AB005231    AB005231    82766bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBB18, complete
     sequence.
    HTG.

AB005232    AB005232    80315bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBG8, complete
     sequence.
    HTG.

AB005233    AB005233    79837bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBK23, complete
     sequence.
    HTG.

AB005234    AB005234    89779bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBK5, complete
     sequence.
    HTG.

AB005235    AB005235    75475bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MED24, complete
     sequence.
    HTG.

AB005236    AB005236    82035bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MIK22, complete
     sequence.
    HTG.

AB005237    AB005237    87835bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MJJ3, complete
     sequence.
    HTG.

AB005238    AB005238    75188bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MKP11, complete
     sequence.
    HTG.

AB005239    AB005239    84544bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MLN1, complete
     sequence.
    HTG.

AB005240    AB005240    80770bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MOK16, complete
     sequence.
    HTG.

AB005241    AB005241    57892bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MOP10, complete
     sequence.
    HTG.

AB005242    AB005242    82001bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MQK4, complete
     sequence.
    HTG.

AB005243    AB005243    86065bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MRN17, complete
     sequence.
    HTG.

AB005244    AB005244    82415bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MRO11, complete
     sequence.
    HTG.

AB005245    AB005245    86630bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MUG13, complete
     sequence.
    HTG.

AB005246    AB005246    77999bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MUP24, complete
     sequence.
    HTG.

AB005247    AB005247    87841bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXA21, complete
     sequence.
    HTG.

AB005248    AB005248    83646bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MX110, complete
     sequence.
    HTG.

AB005249    AB005249    83599bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXM12, complete
     sequence.
    HTG.

AB005295    AB005295      842bp    mRNA     PLN      04-JUL-1997
    Arabidopsis thaliana mRNA for HY5, complete cds.
    HY5.

AB005456    AB005456      842bp    mRNA     PLN      08-JUL-1997
    Arabidopsis thaliana mRNA for HY5, complete cds.
    HY5.

AB005779    AB005779      240bp    DNA      PLN      22-JUL-1997
    Arabidopsis thaliana DNA for tRNA-Cys.
    tRNA-Cys.

AB005780    AB005780      312bp    DNA      PLN      24-JUL-1997
    Arabidopsis thaliana tRNA-Asp gene.
    tRNA-Asp.

AB005781    AB005781      312bp    DNA      PLN      24-JUL-1997
    Arabidopsis thaliana tRNA-Asp gene.
    tRNA-Asp.

AB005782    AB005782      311bp    DNA      PLN      24-JUL-1997
    Arabidopsis thaliana tRNA-Gly gene.
    tRNA-Gly.

AB005783    AB005783      311bp    DNA      PLN      24-JUL-1997
    Arabidopsis thaliana tRNA-Gly gene.
    tRNA-Gly.

AB005784    AB005784      311bp    DNA      PLN      24-JUL-1997
    Arabidopsis thaliana tRNA-Gly gene.
    tRNA-Gly.

AB005785    AB005785      311bp    DNA      PLN      24-JUL-1997
    Arabidopsis thaliana tRNA-Gly gene.
    tRNA-Gly.

AB005786    AB005786      927bp    DNA      PLN      24-JUL-1997
    Arabidopsis thaliana tRNA-Glu gene.
    tRNA-Glu.

AB005888    AB005888     1033bp    mRNA     PLN      24-JUL-1997
    Arabidopsis thaliana mRNA for ATMYB3, complete cds.
    ATMYB3; Atmyb3.

AB005889    AB005889     1364bp    mRNA     PLN      24-JUL-1997
    Arabidopsis thaliana mRNA for ATMYB4, complete cds.
    ATMYB4; Atmyb4.

AC000103    AC000103    99383bp    DNA      PLN      24-JUN-1997
    Genomic sequence for Arabidopsis thaliana BAC F21J9, complete sequence.
    HTG; F21J9.1; F21J9.2; F21J9.3; F21J9.4; F21J9.5; F21J9.6; F21J9.7;
     F21J9.8; F21J9.9; F21J9.10; F21J9.11; F21J9.12; F21J9.13; F21J9.14;
     F21J9.15; F21J9.16; F21J9.17; F21J9.18; F21J9.19; F21J9.20; F21J9.21;
     F21J9.22; F21J9.23; F21J9.24; F21J9.25; F21J9.26.

AC000348    AC000348   111390bp    DNA      PLN      24-JUN-1997
    Genomic sequence for Arabidopsis thaliana BAC T7N9, complete sequence.
    HTG; T7N9.1; T7N9.2; T7N9.3; T7N9.4; T7N9.5; T7N9.6; T7N9.7; T7N9.8;
     T7N9.9; T7N9.10; T7N9.11; T7N9.12; T7N9.13; T7N9.14; T7N9.15; T7N9.16;
     T7N9.17; T7N9.18; T7N9.19; T7N9.20; T7N9.21; T7N9.22; T7N9.23; T7N9.24;
     T7N9.25.

AC002130    AC002130   114729bp    DNA      PLN      18-JUN-1997
    Genomic sequence for Arabidopsis thaliana BAC F1N21, complete sequence.
    HTG.

AC002292    AC002292   120787bp    DNA      PLN      11-JUL-1997
    Genomic sequence of Arabidopsis BAC F8A5, complete sequence.
    HTG.

AC002294    AC002294   103338bp    DNA      PLN      09-JUN-1997
    Arabidopsis thaliana chromosome I, complete sequence.
    HTG.

AC002329    AC002329    98102bp    DNA      PLN      17-JUL-1997
    Arabidopsis thaliana chromosome IV, top arm, complete sequence.
    HTG; F05J06.1; hypothetical protein with weak similarity to S. cerevisiae
     hypothetical protein PID:g1066493; F05J06.2; putative ligand-gated ion
     channel protein; F05J06.3; putative mitochondrial phosphate translocator
     protein; F05J06.4; predicted protein of unknown function; F05J06.5;
     CDPK6 (calmodulin-domain protein kinase isoform 6); F05J06.6;
     hypothetical protein; F05J06.7; hypothetical protein similar to A.
     thaliana protein F19K23.19; F05J06.8; hypothetical protein similar to
     F05J06.10; F05J06.9; putative obtusifoliol 14-alpha demethylase;
     F05J06.10; F05J06.11; F05J06.12; cytosolic ribosomal protein S4;
     F05J06.13; 3-hydroxy-3-methylglutaryl-CoA reductase (HMG2 protein);
     F05J06.14; clathrin adaptor protein small chain subunit (AP19 protein);
     F05J06.15; predicted glycosyl hydrolase; F05J06.16; F05J06.17;
     F05J06.18; NADPH thioredoxin reductase; F05J06.19; Mlo-like
     protein/F05J06.19; F05J06.20; F05J06.21; putative RING zinc-finger
     protein; F05J06.22; F05J06.23; putative Mlo-like protein/F05J06.23.

AC002330    AC002330   113566bp    DNA      PLN      24-JUL-1997
    Arabidopsis thaliana BAC T10P11, complete sequence.
    HTG; T10P11.1; predicted protein of unknown function; T10P11.2; T10P11.3;
     sulfate transporter protein; T10P11.4; putative zinc-finger protein;
     T10P11.5; T10P11.6; hypothetical protein; T10P11.7; putative protein
     trafficking component; T10P11.8; T10P11.9; putative bZIP-like DNA
     binding protein; T10P11.10; putative serine/threonine protein
     kinase/T10P11.10; T10P11.11; putative tryptophan synthase alpha 1-like
     protein; T10P11.12; putative Mlo-like protein/T10P11.12A; predicted
     Mlo-like protein/T10P11.12B; T10P11.13; T10P11.14; predicted NADH
     dehydrogenase 24 kDa subunit; T10P11.14.1; putative cullin-like 1
     protein; T10P11.15; LUMINIDEPENDENS protein; T10P11.16; T10P11.17;
     T10P11.18; glutathione S transferase; T10P11.19; putative chloroplast
     outer envelope 86-like protein; T10P11.20.

AC002354    AC002354    94636bp    DNA      PLN      18-JUL-1997
    Arabidopsis thaliana genomic sequence of BAC F06P23 from chromosome IV,
     complete sequence.
    HTG; F06P23.1; putative tetracycline transporter-like protein/F06P23.1;
     F06P23.2; putative tetracyline transporter-like protein/F06P23.2B;
     putative tetracycline transporter-like protein/F06P23.2A; F06P23.3;
     predicted protein of unknown function; F06P23.4; hypothetical protein;
     F06P23.5; putative leucine-rich protein/F06P23.5; F06P23.6; F06P23.7;
     putative NAM/no apical meristem protein; F06P23.8; putative
     disease-resistance protein/F06P23.8; F06P23.9; putative
     disease-resistance protein/F06P23.9; F06P23.10; F06P23.11; F06P23.12;
     putative B-ZIP-like transcription factor; F06P23.13; F06P23.14; NAD+
     dependent isocitrate dehydrogenase subunit 2; F06P23.14.1; predicted
     leucine-rich protein/F06P23.14.1; F06P23.16.

AF000977    AF000977     1348bp    mRNA     PLN      15-JUN-1997
    Arabidopsis thaliana MEK1 mRNA, complete cds.
    MEK1.

AF001414    AF001414     4429bp    DNA      PLN      02-JUL-1997
    Arabidopsis thaliana 14-3-3-like protein GF14 phi (GRF4) gene, complete
     cds.
    GRF4; 14-3-3-like protein GF14 phi.

AF001415    AF001415     4362bp    DNA      PLN      02-JUL-1997
    Arabidopsis thaliana 14-3-3-like protein GF14 phi (GRF5) gene, complete
     cds.
    GRF5; 14-3-3-like protein GF14 upsilon.

AF002678    AF002678    10000bp    DNA      PLN      28-JUN-1997
    Arabidopsis thaliana kinesin-like protein (ZWICHEL) gene, complete cds.
    ZWICHEL; kinesin-like protein.

AF003094    AF003094      729bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.1 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.1.

AF003095    AF003095     1101bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.2 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.2.

AF003096    AF003096     1055bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.3 mRNA, complete
     cds.
    AP2 domain containing protein RAP2.3.

AF003097    AF003097      969bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.4 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.4.

AF003098    AF003098      937bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.5 mRNA, complete
     cds.
    AP2 domain containing protein RAP2.5.

AF003099    AF003099      651bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.6 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.6.

AF003100    AF003100     1329bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.7 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.7.

AF003101    AF003101     1113bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.8 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.8.

AF003102    AF003102      417bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.9 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.9.

AF003103    AF003103      814bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.10 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.10.

AF003104    AF003104      933bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.11 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.11.

AF003105    AF003105     1277bp    mRNA     PLN      28-JUL-1997
    Arabidopsis thaliana AP2 domain containing protein RAP2.12 mRNA, partial
     cds.
    AP2 domain containing protein RAP2.12.

AF003728    AF003728     1030bp    mRNA     PLN      06-AUG-1997
    Arabidopsis thaliana plasma membrane intrinsic protein (SIMIP) mRNA,
     complete cds.
    SIMIP; plasma membrane intrinsic protein.





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