New Arabidopsis DNA 27-Sep-1997

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Mon Sep 29 13:10:24 EST 1997


====================== New DNA Sequences =======================

AB004820    AB004820     1940bp    mRNA     PLN      18-JUN-1997
    Arabidopsis thaliana SIG1 mRNA for plastid RNA polymerase sigma-subunit,
     partial cds.
    plastid RNA polymerase sigma-subunit; SIG1.

AB004821    AB004821     1979bp    mRNA     PLN      18-JUN-1997
    Arabidopsis thaliana SIG2 mRNA for plastid RNA polymerase sigma-subunit,
     complete cds.
    plastid RNA polymerase sigma-subunit; SIG2.

AB004822    AB004822     1849bp    mRNA     PLN      18-JUN-1997
    Arabidopsis thaliana SIG3 mRNA for plastid RNA polymerase sigma-subunit,
     complete cds.
    plastid RNA polymerase sigma-subunit; SIG3.

AF016846    AF016846     1538bp    mRNA     PLN      16-SEP-1997
    Arabidopsis thaliana WD-40 repeat protein (MSI1) mRNA, complete cds.
    MSI1; WD-40 repeat protein.

AF016847    AF016847     1425bp    mRNA     PLN      16-SEP-1997
    Arabidopsis thaliana WD-40 repeat protein (MSI2) mRNA, complete cds.
    MSI2; WD-40 repeat protein.

AF016848    AF016848     1461bp    mRNA     PLN      16-SEP-1997
    Arabidopsis thaliana WD-40 repeat protein (MSI3) mRNA, complete cds.
    MSI3; WD-40 repeat protein.

AF017991    AF017991      362bp    mRNA     PLN      18-SEP-1997
    Arabidopsis thaliana salt stress inducible small GTP binding protein Ran1
     homolog mRNA, partial cds.
    salt stress inducible small GTP binding protein Ran1 homolog.

ATAJ732     AJ000732     8645bp    DNA      PLN      10-SEP-1997
    Arabidopsis thaliana ASKalpha gene.
    ASKalpha gene; shaggy-like kinase alpha; ASKalpha.

ATH2AV      Y12575      714bp    RNA      PLN      15-SEP-1997
    Arabidopsis thaliana mRNA for histone H2A.F/Z.
    H2Av gene; H2Av; histone H2A.F/Z.

ATH2B       Y12576      684bp    RNA      PLN      15-SEP-1997
    Arabidopsis thaliana mRNA for histone H2B.
    H2B gene; histone H2B; H2B.

ATHAP2A     Y13720     1388bp    RNA      PLN      12-SEP-1997
    Arabidopsis thaliana mRNA for Hap2a transcription factor.
    hap2a gene; transcription factor; hap2a.

ATHAP2B     Y13721     1385bp    RNA      PLN      12-SEP-1997
    Arabidopsis thaliana mRNA for Hap2b transcription factor.
    hap2b gene; transcription factor; hap2b; Transcription factor.

ATHAP2C     Y13722     1516bp    RNA      PLN      12-SEP-1997
    Arabidopsis thaliana mRNA for Hap2c transcription factor.
    hap2c gene; transcription factor; hap2c; Transcription factor.

ATHAP3A     Y13723      832bp    RNA      PLN      12-SEP-1997
    Arabidopsis thaliana mRNA for Hap3a transcription factor.
    hap3a gene; transcription factor; hap3a; Transcription factor.

ATHAP3B     Y13724      874bp    RNA      PLN      12-SEP-1997
    Arabidopsis thaliana mRNA for Hap3b transcription factor.
    hap3b gene; transcription factor; hap3b; Transcription factor.

ATHAP5A     Y13726      716bp    RNA      PLN      12-SEP-1997
    Arabidopsis thaliana mRNA for Hap5a transcription factor.
    hap5a gene; transcription factor; hap5a; Transcription factor.

ATHAP5B     Y13725      584bp    RNA      PLN      12-SEP-1997
    Arabidopsis thaliana mRNA for Hap5b transcription factor.
    hap5b gene; transcription factor; hap5b; Transcription factor.

ATU69138    U69138     1177bp    mRNA     PLN      25-SEP-1997
    Arabidopsis thaliana ascorbate peroxidase 3 (APX3) mRNA, complete cds.
    APX3; ascorbate peroxidase 3.

ATU83490    U83490      917bp    mRNA     PLN      25-SEP-1997
    Arabidopsis thaliana thaumatin-like protein mRNA, complete cds.
    thaumatin-like protein.

TM017A05    AF024504    78344bp    DNA      PLN      25-SEP-1997
    Arabidopsis thaliana BAC TM017A05.
    A_TM017A05.5; tRNA-Ile; ARAC1; Arabidopsis thaliana GTP-binding protein
     (ARAC1) (NID:g1292907); A_TM017A05.7; A_TM017A05.4; A_TM017A05.8;
     A_TM017A05.3; A_TM017A05.9; A_TM017A05.10; A_TM017A05.2; A_TM017A05.11;
     A_TM017A05.12; A_TM017A05.1.

==================== Updated DNA Sequences =====================

AC002334    AC002334    93158bp    DNA      HTG      19-SEP-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F25I18'
     genomic sequence near marker 'TEn5'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002340    AC002340    91100bp    DNA      HTG      23-SEP-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T11J07'
     genomic sequence near marker 'm283'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC002342    AC002342    89662bp    DNA      HTG      23-SEP-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T19K24'
     genomic sequence near marker 'unknown'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002387    AC002387   132747bp    DNA      HTG      16-SEP-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F04L23'
     genomic sequence near marker 'CIC02E07'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002391    AC002391   117137bp    DNA      HTG      19-SEP-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20D16'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 4 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC002409    AC002409    80752bp    DNA      HTG      18-SEP-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20B05'
     genomic sequence near marker 'CIC11C08'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC002535    AC002535    98937bp    DNA      HTG      23-SEP-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T30B22'
     genomic sequence near marker 'CIC06C03'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AF015922    AF015922     2580bp    DNA      PLN      22-SEP-1997
    Arabidopsis thaliana fumerase (FUM) gene, 5' region and exon 1, complete
     sequence.
    FUM; fumerase.

=========== Updated Sequence Features/Annotations  =============

AF012656    AF012656     2550bp    DNA      PLN      16-SEP-1997
    Arabidopsis thaliana putative potassium transporter AtKT1p (AtKT1) gene,
     complete cds.
    AtKT1; putative potassium transporter; putative potassium transporter
     AtKT1p.

AF012657    AF012657     2451bp    mRNA     PLN      16-SEP-1997
    Arabidopsis thaliana putative potassium transporter AtKT2p (AtKT2) mRNA,
     complete cds.
    AtKT2; putative potassium transporter AtKT2p.

AF012658    AF012658     1184bp    mRNA     PLN      16-SEP-1997
    Arabidopsis thaliana putative potassium transporter AtKT3p (AtKT3) mRNA,
     partial cds.
    AtKT3; putative potassium transporter AtKT3p.

AF012659    AF012659      935bp    mRNA     PLN      16-SEP-1997
    Arabidopsis thaliana putative potassium transporter AtKT4p (AtKT4) mRNA,
     partial cds.
    AtKT4; putative potassium transporter AtKT4p.

AF012660    AF012660      385bp    mRNA     PLN      16-SEP-1997
    Arabidopsis thaliana putative potassium transporter AtKT5p (AtKT5) mRNA,
     partial cds.
    AtKT5; putative potassium transporter AtKT5p.

ATAF000146  AF000146     1362bp    mRNA     PLN      24-SEP-1997
    Arabidopsis thaliana dihydroorotase (pyr4) mRNA, complete cds.
    pyr4; dihydroorotase.

ATAF000147  AF000147      895bp    mRNA     PLN      24-SEP-1997
    Arabidopsis thaliana UMP/CMP kinase (pyr6) mRNA, complete cds.
    pyr6; UMP/CMP kinase.

ATCER1L19   X95965     1992bp    RNA      PLN      22-SEP-1997
    A.thaliana CER1-like gene (1992bp).
    CER1-like gene; CER1-like.

ATCER1L     X95964     4200bp    DNA      PLN      22-SEP-1997
    A.thaliana CER1-like gene (4200bp).
    CER1-like gene; CER1-like.

ATZ82043    Z82043     4301bp    DNA      PLN      10-SEP-1997
    A.thaliana ATB2 gene.
    ATB2; bZIP transcription factor; MAR-1.

ATZ83320    Z83320    10072bp    DNA      PLN      10-SEP-1997
    A.thaliana partial ATH1 gene.
    ATH1 gene; MAR; ATH1.

ATZ83321    Z83321    16202bp    DNA      PLN      10-SEP-1997
    A.thaliana 16 kb chromosome 1 DNA fragment.
    HMG-1; alpha-amylase; C-24-sterol-methyltransferase; DEG-1 gene;
     alpha-amylase-like protein; DEG-1-like protein; plastocyanin locus
     MAR-1; HMG-1-like protein; plastocyanin; plastocyanin locus MAR-2;
     thioredoxin-like protein; plastocyanin locus MAR-3.

F19P19      AC000104   107527bp    DNA      PLN      16-SEP-1997
    Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete
     sequence.
    HTG; F19P19.1; F19P19.2; F19P19.3; F19P19.4; F19P19.5; F19P19.6;
     F19P19.7; F19P19.8; F19P19.9; F19P19.10; F19P19.11; F19P19.12;
     F19P19.13; F19P19.14; F19P19.15; F19P19.16; F19P19.17; F19P19.18;
     F19P19.19; F19P19.20; F19P19.21; F19P19.22; F19P19.23; F19P19.24;
     tRNA-Gly; F19P19.25; F19P19.26; F19P19.27; F19P19.28; F19P19.29;
     F19P19.30; F19P19.31; F19P19.32.

F7G19       AC000106   110514bp    DNA      PLN      16-SEP-1997
    Sequence of BAC F7G19 from Arabidopsis thaliana chromosome 1, complete
     sequence.
    HTG; F7G19.1; tRNA-Glu; F7G19.2; F7G19.3; F7G19.4; F7G19.5; F7G19.6;
     F7G19.7; F7G19.8; F7G19.9; F7G19.10; F7G19.11; F7G19.12; F7G19.13;
     F7G19.14; F7G19.15; F7G19.16; F7G19.17; tRNA-Pro; F7G19.18; F7G19.19;
     F7G19.20; F7G19.21; F7G19.22; F7G19.23; F7G19.24; tRNA-Ala; F7G19.25;
     F7G19.26.


To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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