New Arabidopsis DNA 04-Apr-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sun Apr 5 12:35:50 EST 1998


====================== New DNA Sequences =======================

AC004481    AC004481   115161bp    DNA      HTG      27-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F13P17'
     genomic sequence near marker 've016'; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC004482    AC004482    96056bp    DNA      HTG      27-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F27L4'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 7 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004483    AC004483    86653bp    DNA      HTG      27-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T12J2'
     genomic sequence near marker 'mi421'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC004484    AC004484   175584bp    DNA      HTG      29-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T1D16'
     genomic sequence near marker 'B68'; HTGS phase 1, 17 unordered pieces.
    HTG; HTGS_PHASE1.

AC004512    AC004512    89805bp    DNA      HTG      31-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC T8F5
     sequence; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC004515    AC004515    89461bp    DNA      HTG      01-APR-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F14G23; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AF030132    AF030132      905bp    mRNA     PLN      02-APR-1998
    Arabidopsis thaliana glutathione peroxidase mRNA, complete cds.
    glutathione peroxidase.

AF030304    AF030304     1099bp    mRNA     PLN      02-APR-1998
    Arabidopsis thaliana zinc finger protein mRNA, partial cds.
    zinc finger protein.

AF051326    AF051326     1324bp    mRNA     PLN      02-APR-1998
    Arabidopsis thaliana rRNA methylase (PFC1) mRNA, complete cds.
    PFC1; rRNA methylase.

AF053302    AF053302      605bp    mRNA     PLN      31-MAR-1998
    Arabidopsis thaliana putative transcriptional co-activator (KIWI) mRNA,
     complete cds.
    KIWI; putative transcriptional co-activator.

AF053303    AF053303      730bp    mRNA     PLN      31-MAR-1998
    Arabidopsis thaliana putative transcriptional co-activator (KELP) mRNA,
     complete cds.
    KELP; putative transcriptional co-activator.

AF053746    AF053746      745bp    mRNA     PLN      29-MAR-1998
    Arabidopsis thaliana dormancy-associated protein (DRM1) mRNA, complete
     cds.
    DRM1; dormancy-associated protein.

AF053747    AF053747     4390bp    DNA      PLN      29-MAR-1998
    Arabidopsis thaliana dormancy-associated protein (DRM1) gene, complete
     cds.
    DRM1; dormancy-associated protein.

AF054906    AF054906     1629bp    mRNA     PLN      31-MAR-1998
    Arabidopsis thaliana myrosinase-binding protein homolog mRNA, complete
     cds.
    myrosinase-binding protein homolog.

AF055372    AF055372      747bp    mRNA     PLN      02-APR-1998
    Arabidopsis thaliana AT4 mRNA sequence.

AGR228341   AJ228341      161bp    DNA      PLN      30-MAR-1998
    Arabidopsis griffithiana DNA, HindIII satellite repeat (clone pAg2).
    satellite.

AGR228342   AJ228342      172bp    DNA      PLN      30-MAR-1998
    Arabidopsis griffithiana DNA, HindIII satellite repeat (clone pAg4).
    satellite.

AGR228344   AJ228344      164bp    DNA      PLN      30-MAR-1998
    Arabidopsis griffithiana DNA, HindIII satellite repeat (clone pAg11).
    satellite.

AGR228345   AJ228345      179bp    DNA      PLN      30-MAR-1998
    Arabidopsis griffithiana DNA, HindIII satellite repeat (clone pAg1).
    satellite.

AGR228346   AJ228346      167bp    DNA      PLN      30-MAR-1998
    Arabidopsis griffithiana DNA, HindIII satellite repeat (clone pAg12).
    satellite.

AGR228351   AJ228351      175bp    DNA      PLN      30-MAR-1998
    Arabidopsis griffithiana DNA, HindIII satellite repeat (clone pAg8).
    satellite.

AGR228352   AJ228352      171bp    DNA      PLN      30-MAR-1998
    Arabidopsis griffithiana DNA, HindIII satellite repeat (clone pAg10).
    satellite.

APU228334   AJ228334      171bp    DNA      PLN      30-MAR-1998
    Arabidopsis pumila DNA, HindIII satellite repeat (clone pAp5).
    satellite.

APU228335   AJ228335      169bp    DNA      PLN      30-MAR-1998
    Arabidopsis pumila DNA, HindIII satellite repeat (clone pAp3).
    satellite.

APU228336   AJ228336      171bp    DNA      PLN      30-MAR-1998
    Arabidopsis pumila DNA, HindIII satellite repeat (clone pAp5r).
    satellite.

APU228337   AJ228337      171bp    DNA      PLN      30-MAR-1998
    Arabidopsis pumila DNA, HindIII satellite repeat (clone pAp6r).
    satellite.

APU228338   AJ228338      163bp    DNA      PLN      30-MAR-1998
    Arabidopsis pumila DNA, HindIII satellite repeat (clone pAp7).
    satellite.

APU228339   AJ228339      178bp    DNA      PLN      30-MAR-1998
    Arabidopsis pumila DNA, HindIII satellite repeat (clone pAp8).
    satellite.

APU228340   AJ228340      176bp    DNA      PLN      30-MAR-1998
    Arabidopsis pumila DNA, HindIII satellite repeat (clone pAp12).
    satellite.

APU228343   AJ228343      167bp    DNA      PLN      30-MAR-1998
    Arabidopsis pumila DNA, HindIII satellite repeat (clone pAp13).
    satellite.

ATAJ3189    AJ223189     2946bp    DNA      PLN      30-MAR-1998
    Arabidopsis thaliana PGA2 gene.
    PGA2 gene; polygalacturonase; PGA2.

ATCER2BRL   X95963      331bp    DNA      PLN      30-MAR-1998
    A.thaliana CER2 gene, mutant BRl17.
    CER2 gene; CER2.

ATH228349   AJ228349      147bp    DNA      PLN      30-MAR-1998
    Arabidopsis thaliana DNA, AluI satellite repeat (clone pAtAlu2).
    satellite.

ATH228350   AJ228350      148bp    DNA      PLN      30-MAR-1998
    Arabidopsis thaliana DNA, AluI satellite repeat (clone pAtAlu4).
    satellite.

ATPGA3GE    Y16230     2469bp    DNA      PLN      30-MAR-1998
    Arabidopsis thaliana PGA3 gene.
    PGA3 gene; polygalacturonase; PGA3.

==================== Updated DNA Sequences =====================

AC002392    AC002392   113109bp    DNA      HTG      27-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20K24'
     genomic sequence near marker 'CIC06E08'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

ATAC003673  AC003673    99359bp    DNA      PLN      01-APR-1998
    Arabidopsis thaliana chromosome II BAC F19F24 genomic sequence, complete
     sequence.
    HTG; F19F24.1; F19F24.2; putative reverse transcriptase; F19F24.3;
     F19F24.4; F19F24.5; F19F24.6; F19F24.7; F19F24.8; F19F24.9; putative
     receptor Ser/Thr protein kinase; F19F24.10; F19F24.11; putative protein
     kinase; F19F24.12; F19F24.13; F19F24.14; similar to salt inducible
     protein; F19F24.15; F19F24.16; plasma membrane proton pump H+ ATPase,
     PMA1; F19F24.17; F19F24.18; peroxidase ATP22a; F19F24.19; putative ATP
     binding protein; F19F24.20; F19F24.21; similar to APG (non proline-rich
     region); F19F24.22.

AC004077    AC004077    93060bp    DNA      HTG      27-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T31E10'
     genomic sequence near marker 've016'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004136    AC004136   121920bp    DNA      HTG      27-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T8K22'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 21 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004138    AC004138   101943bp    DNA      HTG      27-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T17M13'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004218    AC004218   102029bp    DNA      HTG      27-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F12L6'
     genomic sequence near marker 'CIC10A06'; HTGS phase 1, 4 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004238    AC004238   108484bp    DNA      HTG      27-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F19I3'
     genomic sequence near marker 've016'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

ATAC003673  AC003673    99359bp    DNA      PLN      01-APR-1998
    Arabidopsis thaliana chromosome II BAC F19F24 genomic sequence, complete
     sequence.
    HTG; F19F24.1; F19F24.2; putative reverse transcriptase; F19F24.3;
     F19F24.4; F19F24.5; F19F24.6; F19F24.7; F19F24.8; F19F24.9; putative
     receptor Ser/Thr protein kinase; F19F24.10; F19F24.11; putative protein
     kinase; F19F24.12; F19F24.13; F19F24.14; similar to salt inducible
     protein; F19F24.15; F19F24.16; plasma membrane proton pump H+ ATPase,
     PMA1; F19F24.17; F19F24.18; peroxidase ATP22a; F19F24.19; putative ATP
     binding protein; F19F24.20; F19F24.21; similar to APG (non proline-rich
     region); F19F24.22.

ATCD1       X83369     1951bp    mRNA     PLN      25-MAR-1998
    A.thaliana mRNA for cyclin delta-1.
    cyclin; cyclin delta-1.

ATCD2       X83370     1650bp    mRNA     PLN      25-MAR-1998
    A.thaliana mRNA for cyclin delta-2 (CycD2).
    CycD2; cyclin; cyclin D2; cyclin delta-2.

ATCD3       X83371     1632bp    mRNA     PLN      25-MAR-1998
    A.thaliana mRNA for cyclin delta-3.
    cyclin; cyclin delta-3.

=========== Updated Sequence Features/Annotations  =============

AF028842    AF028842     1477bp    mRNA     PLN      28-MAR-1998
    Arabidopsis thaliana DegP protease mRNA, nuclear gene encoding
     chloroplast protein, complete cds.
    DegP; DegP protease precursor; DegP protease.

AF040631    AF040631     2239bp    DNA      PLN      02-APR-1998
    Arabidopsis thaliana IAA17/AXR3 protein (AXR3) gene, complete cds.
    AXR3; IAA17/AXR3 protein.

AF040632    AF040632     2239bp    DNA      PLN      02-APR-1998
    Arabidopsis thaliana IAA17/AXR3-1 protein (AXR3) gene, complete cds.
    AXR3; IAA17/AXR3-1 protein.

AT2CPBAS1   Y10478      981bp    mRNA     PLN      31-MAR-1998
    A.thaliana mRNA for 2-Cys peroxiredoxin.
    2-Cys peroxiredoxin bas1; bas1 gene; bas1; 2-Cys peroxiredoxin.

ATGASA4     X98255     2399bp    DNA      PLN      30-MAR-1998
    A.thaliana GASA4 gene.
    GASA4 gene; GASA4.

ATRNACON    Y10555     1336bp    mRNA     PLN      25-MAR-1998
    A.thaliana mRNA for CONSTANS like 1 (COL1) protein.
    constans gene; CONSTANS.

ATU90879    U90879     1985bp    mRNA     PLN      01-APR-1998
    Arabidopsis thaliana biotin carboxylase subunit (CAC2) mRNA, complete
     cds.
    CAC2; biotin carboxylase subunit.

ATU91414    U91414     6055bp    DNA      PLN      01-APR-1998
    Arabidopsis thaliana heteromeric acetyl-CoA carboxylase biotin
     carboxylase subunit (CAC2) gene, nuclear gene encoding plastid protein,
     complete cds.
    CAC2; heteromeric acetyl-CoA carboxylase biotin carboxylase subunit.

ATY14052    Y14052      957bp    mRNA     PLN      31-MAR-1998
    Arabidopsis thaliana mRNA for ribosomal protein S6.
    ribosomal protein S6; RPS6 gene; RPS6.

ATZ86093    Z86093     1450bp    mRNA     PLN      25-MAR-1998
    A.thaliana mRNA for b-Zip DNA binding protein.
    bZIP; DNA binding protein; b-Zip DNA binding protein.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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