New Arabidopsis DNA 11-Apr-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Apr 11 19:04:36 EST 1998


====================== New DNA Sequences =======================

AC004521    AC004521   118648bp    DNA      HTG      06-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F4I1'
     genomic sequence near marker 'm336'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

ATA224957   AJ224957     4081bp    DNA      PLN      02-APR-1998
    Arabidopsis thaliana SCR2 gene.
    SCR2 gene; SCR2.

ATAJ0058    AJ000058     2638bp    mRNA     PLN      06-APR-1998
    Arabidopsis thaliana mRNA for MCM3 homolog.
    MCM3 homolog.

ATF21P8     AL022347    85785bp    DNA      PLN      01-APR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F21P8 (ESSAII project).
    F21P8.10; putative protein; F21P8.20; protein kinase - like protein;
     F21P8.30; serine/threonine kinase - like protein; F21P8.40; F21P8.50;
     F21P8.60; F21P8.70; serine/threonine kinase -like protein; F21P8.80;
     F21P8.90; serine /threonine kinase - like protein; F21P8.100; F21P8.110;
     F21P8.120; F21P8.130; F21P8.140; F21P8.150; F21P8.160; serine/threonine
     kinase; F21P8.170; F21P8.180; F21P8.190; serine/threonine - like
     protein; F21P8.200; F21P8.210; F21P8.220; hypothetical protein.

ATJ00135    AJ001359     1975bp    mRNA     PLN      02-APR-1998
    Arabidopsis thaliana cDNA encoding plastidic glucose-6-phosphate
     dehydrogenase.
    glucose-6-phosphate dehydrogenase; plastidic glucose-6-phosphate
     dehydrogenase.

ATT19K4     AL022373   106007bp    DNA      PLN      06-APR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone T19K4 (ESSAII project).
    19K4.10; putative protein (fragment); 19K4.20; putative protein; 19K4.30;
     putative bZIP transcription factor; 19K4.40; 19K4.50; 19K4.60;
     hypothetical protein; 19K4.70; 19K4.80; ras-related small GTP-binding
     protein; 19K4.90; 19K4.100; putative ascorbate peroxidase; 19K4.110;
     19K4.120; 19K4.130; thaumatin-like protein; 19K4.140; 19K4.150;
     glycine-rich protein; 19K4.160; 19K4.170; DnaJ-like protein; 19K4.180;
     19K4.190; putative Myc-type transcription factor; 19K4.200;
     Calcium-dependent serine/threonine protein kinase; 19K4.210; ATM-like
     protein; 19K4.220; 19K4.230; 19K4.240; putative auxin-induced protein;
     19K4.250; myosin-like protein; 19K4.260; ribosomal protein L2.

ATU72351    U72351     1800bp    mRNA     PLN      04-APR-1998
    Arabidopsis thaliana ADPG pyrophosphorylase small subunit (ADG1) mRNA,
     complete cds.
    ADG1; ADPG pyrophosphorylase small subunit.

ATY17053    Y17053     2245bp    mRNA     PLN      07-APR-1998
    Arabidopsis thaliana mRNA for At-hsc70-3 protein.
    hsc70; At-hsc70-3.

==================== Updated DNA Sequences =====================

AC003096    AC003096    78725bp    DNA      HTG      02-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T29F13'
     genomic sequence near marker 've016'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC004077    AC004077    93060bp    DNA      HTG      02-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T31E10'
     genomic sequence near marker 've016'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004136    AC004136   117771bp    DNA      HTG      02-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T8K22'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 11 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004165    AC004165    83774bp    DNA      HTG      03-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T27E13'
     genomic sequence near marker 'm283'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004482    AC004482    97213bp    DNA      HTG      02-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F27L4'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004484    AC004484    82212bp    DNA      HTG      03-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T1D16'
     genomic sequence near marker 'B68'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004515    AC004515    90395bp    DNA      HTG      03-APR-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F14G23; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

ATAC004238  AC004238   108484bp    DNA      PLN      07-APR-1998
    Arabidopsis thaliana chromosome II BAC F19I3 genomic sequence, complete
     sequence.
    HTG; F19I3.1; F19I3.2; putative berberine bridge enzyme; F19I3.3;
     F19I3.4; F19I3.5; F19I3.6; putative DNA-binding protein; F19I3.7;
     putative coatomer epsilon subunit; F19I3.8; putative
     UDP-galactose-4-epimerase; F19I3.9; F19I3.10; F19I3.11; similar to Human
     XE169 protein (escapes X-chromosome inactivation); F19I3.12; putative
     CTP synthase; F19I3.13; RING3-like protein; F19I3.14; F19I3.15;
     F19I3.16; Cf-2.1-like protein; F19I3.17; putative vacuolar sorting
     receptor; F19I3.18; tRNA-Thr; F19I3.19; putative amino acid transporter;
     F19I3.20; putative translation initiation factor EIF-2B-epsilon subunit;
     F19I3.21; putative phosphatidylinositol-glycan-class C (PIGC); F19I3.22;
     putative zinc-finger protein; F19I3.23; F19I3.24; F19I3.25; F19I3.26;
     F19I3.27; putative phosphoribosylaminoimidazolecarboxamide
     formyltransferase; F19I3.28; putative Ser/Thr protein kinase; F19I3.29;
     putative potassium transporter.

=========== Updated Sequence Features/Annotations  =============

AF014960    AF014960     5574bp    mRNA     PLN      06-APR-1998
    Arabidopsis thaliana multidrug resistance-associated protein 2 (AtMRP2)
     mRNA, complete cds.
    AtMRP2; multidrug resistance-associated protein 2.

AF021244    AF021244     1188bp    mRNA     PLN      06-APR-1998
    Arabidopsis thaliana coronatine-induced protein 1 (cor1) mRNA, complete
     cds.
    cor1; coronatine-induced protein 1.

ATDNAJLIK   Y11969     1580bp    mRNA     PLN      06-APR-1998
    A.thaliana mRNA for dnaJ-like protein.
    dnaJ-like protein; J10 gene; J10.

ATU29168    U29168     2692bp    mRNA     PLN      06-APR-1998
    Arabidopsis thaliana DNA repair protein homolog (XPBara) mRNA, complete
     cds.
    XPBara.

D89620      D89620     4920bp    DNA      PLN      10-APR-1998
    Arabidopsis thaliana DNA for glutathione reductase, complete cds.
    glutathione reductase; glutathione reductase precursor.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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